BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0128.0002.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831330.1| Transposase [Bacillus cereus ATCC 14579] >gi|30... 476 e-133 ref|NP_830417.1| Transposase [Bacillus cereus ATCC 14579] >gi|29... 474 e-132 ref|NP_832108.1| Transposase [Bacillus cereus ATCC 14579] >gi|29... 463 e-129 ref|ZP_00183639.1| hypothetical protein Exigu096401 [Exiguobacte... 379 e-104 ref|NP_783746.1| transposase [Clostridium tetani] >gi|28208731|g... 348 1e-94 >ref|NP_831330.1| Transposase [Bacillus cereus ATCC 14579] ref|NP_832373.1| Transposase [Bacillus cereus ATCC 14579] ref|NP_834858.1| Transposase [Bacillus cereus ATCC 14579] gb|AAP08531.1| Transposase [Bacillus cereus ATCC 14579] gb|AAP09574.1| Transposase [Bacillus cereus ATCC 14579] gb|AAP12059.1| Transposase [Bacillus cereus ATCC 14579] Length = 359 Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust. Identities = 232/359 (64%), Positives = 269/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDD++ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDEKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA ++ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 >ref|NP_830417.1| Transposase [Bacillus cereus ATCC 14579] gb|AAP07618.1| Transposase [Bacillus cereus ATCC 14579] Length = 359 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 231/359 (64%), Positives = 268/359 (74%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+ Q S Sbjct: 1 MSQTITVKVKLLPTKAQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDD++ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDEKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA ++ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA DRKY C CGFE HRD VGAMNIRYA VIDGNSQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKAPDRKYKCRCGFEKHRDIVGAMNIRYATVIDGNSQSA 359 >ref|NP_832108.1| Transposase [Bacillus cereus ATCC 14579] gb|AAP09309.1| Transposase [Bacillus cereus ATCC 14579] Length = 359 Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/359 (63%), Positives = 265/359 (73%), Gaps = 41/359 (11%) Query: 1 MSQTLTIKIKLLPTREQ----------------------------------------ASM 20 MSQT+T+K+KLLPT+EQ S Sbjct: 1 MSQTITVKVKLLPTKEQIQLLEQSSYEYIKVINTLVSEMAEAKKSTKKSTKDVEANLPSA 60 Query: 21 VKNQAIXXXXXX-XXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKT 79 VKNQAI ++P+LK+PVC+WNNQNYSFDFTHIS+PLM+NGK + Sbjct: 61 VKNQAIKDAKSVFSTKVKKSKYKVIPILKRPVCVWNNQNYSFDFTHISVPLMVNGKSTRL 120 Query: 80 PIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKV 139 +RALL DK NRN LL HK GTLRIT+KS KWIAQISVT+PT+EKTGTKI+GVDLGLKV Sbjct: 121 KVRALLTDKYNRNFNLLTHKLGTLRITKKSNKWIAQISVTIPTNEKTGTKILGVDLGLKV 180 Query: 140 PAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHK 199 PAVA+TDD++ FFGN RQNKY++RKF+S RKKLG+ KKLNAI +LDDKEQR+M+DQDHK Sbjct: 181 PAVAITDDEKVRFFGNGRQNKYMKRKFRSVRKKLGENKKLNAIRQLDDKEQRWMQDQDHK 240 Query: 200 ISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGV 259 +SR I+ FA ++ ISVIRLEQL NIRQTARTSRKNEK++H WSFYRL+QFIEYKA L G+ Sbjct: 241 VSREIIDFATDNNISVIRLEQLTNIRQTARTSRKNEKNLHTWSFYRLAQFIEYKANLVGI 300 Query: 260 KVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 KVEYVNPA+TS+TCPKCSEKNKA RK C CGFE HRD VGAMNIR A VI+G SQSA Sbjct: 301 KVEYVNPAYTSQTCPKCSEKNKAPARKSKCRCGFEKHRDSVGAMNIRTATVINGTSQSA 359 >ref|ZP_00183639.1| hypothetical protein Exigu096401 [Exiguobacterium sp. 255-15] Length = 248 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 172/248 (69%), Positives = 214/248 (86%) Query: 71 MMNGKVAKTPIRALLIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKI 130 MM+GK K I+A ++D NRN LL +K GTLRIT+KS KWIAQI+VT+ T+EKTG+K+ Sbjct: 1 MMDGKAKKMAIKAEMVDTHNRNFSLLNNKLGTLRITKKSNKWIAQIAVTILTTEKTGSKV 60 Query: 131 MGVDLGLKVPAVAVTDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQ 190 +GVDLGLKVPAVA TDDD+ FFGN R+NKY++RKF+++RK+LGQ+KKLNAI KL+++EQ Sbjct: 61 LGVDLGLKVPAVASTDDDKARFFGNGRENKYMKRKFRARRKELGQKKKLNAIKKLNNQEQ 120 Query: 191 RYMKDQDHKISRAIVQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFI 250 R+M+D+DHK+SRAIV FA E+ +SVIRLE+LANIRQTARTSRKN K++H WSFYRL+ FI Sbjct: 121 RWMRDKDHKVSRAIVSFAKENHVSVIRLERLANIRQTARTSRKNNKNLHTWSFYRLATFI 180 Query: 251 EYKAKLAGVKVEYVNPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPV 310 YKA L G+KVEYVNPA+TS+TCP C ++NKA+DR Y C CGF+ HRD VGAMNIRYAPV Sbjct: 181 AYKASLEGIKVEYVNPAYTSQTCPSCGKRNKAKDRTYFCPCGFKKHRDLVGAMNIRYAPV 240 Query: 311 IDGNSQSA 318 +DGNSQSA Sbjct: 241 VDGNSQSA 248 >ref|NP_783746.1| transposase [Clostridium tetani] gb|AAO37413.1| transposase [Clostridium tetani] Length = 351 Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 180/354 (50%), Positives = 228/354 (64%), Gaps = 45/354 (12%) Query: 5 LTIKIKLLPTREQ----------------------------------------ASMVKNQ 24 LTIKIKL+P +EQ S VKNQ Sbjct: 3 LTIKIKLIPMKEQKLHIQDTCLEYIKTVNDIVSLMVAENKSLKLTSKDIIANLPSAVKNQ 62 Query: 25 AIXXXXXXXXXXXXXXXTIVPVLKKPVCIWNNQNYSFDFTHISMPLMMNGKVAKTPIRAL 84 AI I LKKP+CIWNNQNYS +I+ P+M+NGK K ++A+ Sbjct: 63 AIRDSKSVYSKYKKTK--IQNFLKKPMCIWNNQNYSIGENYIAFPVMINGKSKKIKVKAI 120 Query: 85 LIDKDNRNLGLLKHKSGTLRITQKSEKWIAQISVTVPTSEKTGTKIMGVDLGLKVPAVAV 144 + + LL +K GTLRIT+K+ K +AQIS+ V E K MG+DLGLK+PAVAV Sbjct: 121 I---EQYQKDLLTNKLGTLRITKKANKLMAQISIDVVEKENVNNKAMGIDLGLKIPAVAV 177 Query: 145 TDDDQTCFFGNERQNKYIRRKFQSKRKKLGQRKKLNAIVKLDDKEQRYMKDQDHKISRAI 204 T+D + FFGN RQNKYI+RK++S RKKLG+ KK+N I ++DKEQRYMKDQDHKISR I Sbjct: 178 TEDKKVKFFGNGRQNKYIKRKYRSLRKKLGKAKKINKIKSINDKEQRYMKDQDHKISRGI 237 Query: 205 VQFAVEHQISVIRLEQLANIRQTARTSRKNEKSIHMWSFYRLSQFIEYKAKLAGVKVEYV 264 V FA+++ ISVIRLE+L NIR TA+T+RKNEK++H WSFYRL+Q+IEYKA L G+K+EYV Sbjct: 238 VNFAIQNNISVIRLEKLTNIRNTAKTNRKNEKNLHTWSFYRLAQYIEYKALLEGIKIEYV 297 Query: 265 NPAHTSRTCPKCSEKNKAQDRKYICSCGFETHRDRVGAMNIRYAPVIDGNSQSA 318 NP +TS+ CP C + N A+DRKY CSCG++ HRD +NI A V+DGNS A Sbjct: 298 NPCNTSKQCPICGKLNTAKDRKYQCSCGYKAHRDLNACINIINATVVDGNSLQA 351 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 417,836,619 Number of extensions: 15967935 Number of successful extensions: 44064 Number of sequences better than 1.0e-05: 137 Number of HSP's gapped: 44067 Number of HSP's successfully gapped: 137 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)