BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0016.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_814959.1| ABC transporter, permease protein [Enterococcus... 311 1e-83 ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans]... 280 3e-74 ref|NP_242978.1| transmembrane lipoprotein [Bacillus halodurans]... 240 3e-62 ref|NP_694131.1| hypothetical protein OB3209 [Oceanobacillus ihe... 234 1e-60 ref|ZP_00035516.1| COG4209: ABC-type polysaccharide transport sy... 228 1e-58 >ref|NP_814959.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81029.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 303 Score = 311 bits (797), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 147/294 (50%), Positives = 210/294 (71%) Query: 21 LRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLEHFREFF 80 L++ Y QR L M L GVA+MIVFNY P+YGI+IAFKNY I+ ++ SAPW GLE+FR Sbjct: 4 LKKFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFRIIM 63 Query: 81 EDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPYFLSWVI 140 ED V+NTL IS ++L +GF +PI+ A+++ EMR KK +QTISY+P+F SW++ Sbjct: 64 EDSFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFSWIV 123 Query: 141 LGGILTTWLADVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGWSAIIYLA 200 LGG+L +WL+ G IN ++M L L+++ VN L +P +W IAV+S +WKE+GW I+YLA Sbjct: 124 LGGMLISWLSTNGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTILYLA 183 Query: 201 AISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFDQIMVLRN 260 +S I P YEAA+IDGA + +I++ITLP +A +S+ IL VSG+L SN DQ +VL N Sbjct: 184 GMSRIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLVLMN 243 Query: 261 SLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRINN 314 + N++ S VI+ ++Y+ GL FSY+TAVGL SVI+ I++ +T+++NN Sbjct: 244 AQNQNKSEVINSFVYRMGLTQGDFSYATAVGLGISVISIVLLVITDRITRKMNN 297 >ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans] pir||G83888 transmembrane lipoprotein lplB [imported] - Bacillus halodurans (strain C-125) dbj|BAB05630.1| transmembrane lipoprotein [Bacillus halodurans] Length = 319 Score = 280 bits (716), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 135/304 (44%), Positives = 209/304 (68%), Gaps = 1/304 (0%) Query: 15 QKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLE 74 Q++ IL + +Q+YL +M+L VAW++VFNYFP++G +AF+N+ S W GL+ Sbjct: 15 QRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQ 74 Query: 75 HFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPY 134 HF E F+D V++NTL +S + L++GF +PILFA+LLNE+R + FK++VQT+SYLP+ Sbjct: 75 HFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPH 134 Query: 135 FLSWVILGGILTTWLA-DVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGW 193 F+SWV++ GI+T L+ D GI+N LLM + +PV F+A+ + FW I +S +WKE+GW Sbjct: 135 FVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGW 194 Query: 194 SAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFD 253 ++II+LAA++GI P+LYEAAK+DGA R+++I ITLP I T+ ++ IL++ ++ F+ Sbjct: 195 NSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFE 254 Query: 254 QIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRIN 313 + +L N L S V+D+Y GL R+SY TA+G+ SV+ ++N + KR Sbjct: 255 KQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFT 314 Query: 314 NTSL 317 N S+ Sbjct: 315 NQSV 318 >ref|NP_242978.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83913 transmembrane lipoprotein BH2112 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05831.1| transmembrane lipoprotein [Bacillus halodurans] Length = 337 Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 126/299 (42%), Positives = 189/299 (63%), Gaps = 1/299 (0%) Query: 21 LRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLEHFREFF 80 ++ Y Q+ L +M+L + W+I+F Y P+YG IAF+++ I WAG +HF F Sbjct: 39 FKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLF 98 Query: 81 EDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPYFLSWVI 140 D V++NTL +S + L++GF I AILLNE+R++ FK+ VQTISY+P+FLSWV+ Sbjct: 99 TDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVV 158 Query: 141 LGGILTTWLA-DVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGWSAIIYL 199 G+++ L+ + GIIN +LMKL +I EP+ +L ++FWGI S +WK +GW+ IIYL Sbjct: 159 AAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYL 218 Query: 200 AAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFDQIMVLR 259 AAI+ I E YEAA+IDGA R QRI ITLP + + IL I+ + IL S F+ +L Sbjct: 219 AAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLM 278 Query: 260 NSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRINNTSLF 318 N +N + +DI++ + G+ FS +TA G+ K+V++ +N + KR+ LF Sbjct: 279 NPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEARLF 337 >ref|NP_694131.1| hypothetical protein OB3209 [Oceanobacillus iheyensis HTE831] dbj|BAC15165.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 311 Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 194/312 (62%), Gaps = 4/312 (1%) Query: 7 AAADPGINQKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIG 66 A P + + I + ++ L I L V++ +F+Y PMYG+ IAFK+Y I Sbjct: 2 AKQLPAHRGRSYKIKKNLFSNWQLYIFLLPVVSYFFIFHYIPMYGVQIAFKDYFANLGIW 61 Query: 67 SAPWAGLEHFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSV 126 +PW G EHF FF ++KNTL ++ L +L+ FPLPI+ A+ NE+R+ +KK Sbjct: 62 GSPWVGFEHFERFFSSYYFWRLLKNTLVLN-LYMLVLFPLPIILALAFNELRNGAYKKWT 120 Query: 127 QTISYLPYFLSWVILGGILTTWL-ADVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVIS 185 QT++Y P+F+S V++ G+L +L + G+INHL+ L + EP+ FL P F I V S Sbjct: 121 QTLTYAPHFISVVVVVGMLVAFLDPNTGLINHLIRALGM--EPIPFLTSPDWFRHIFVWS 178 Query: 186 SIWKELGWSAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVS 245 W+ LGWS IIYLAA++G++PEL+EAAK+DGA R QRI I +PSI T+ +LFIL + Sbjct: 179 GQWQTLGWSTIIYLAALAGVNPELHEAAKVDGATRLQRIFRINIPSIMPTIVVLFILNIG 238 Query: 246 GILNSNFDQIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXIS 305 + F+++++++N+LN S +I ++Y+TG+ ++S++ AVGL +S I Sbjct: 239 NFMQIGFEKVLLMQNTLNSETSDIIQTFVYETGILQGQYSFAAAVGLFESAINIVLLITV 298 Query: 306 NSVTKRINNTSL 317 N + ++++ SL Sbjct: 299 NQIARKVSENSL 310 >ref|ZP_00035516.1| COG4209: ABC-type polysaccharide transport system, permease component [Enterococcus faecium] Length = 324 Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 186/305 (60%), Gaps = 3/305 (0%) Query: 15 QKKWGILRRMYRQRYLQIMALLGVAWMIVFNYFPMYGIVIAFKNYDIIGSIGSAPWAGLE 74 +++ I+ + ++L +M L GV + ++F Y PM G+VIAF++Y I +PW G + Sbjct: 22 RRRKKIIAGIKTNKFLYVMILPGVLYFLIFRYLPMGGLVIAFQDYQPFLGIMGSPWVGFK 81 Query: 75 HFREFFEDENLGYVVKNTLGISALRLLIGFPLPILFAILLNEMRSVRFKKSVQTISYLPY 134 HF F + +++NTL + L + + FP+PI+ ++LLNE+ + R K +QTI Y+P+ Sbjct: 82 HFIRLFTEPTFFTLLRNTLILFGLNIFVFFPMPIILSLLLNEVTNKRLKNGIQTIIYIPH 141 Query: 135 FLSWVILGGILTTWL-ADVGIINHLLMKLHLIHEPVNFLAEPKHFWGIAVISSIWKELGW 193 F+SWVI+ I +L D G++N L + E ++FL P+ + + IWKELGW Sbjct: 142 FMSWVIIVSITYVFLNVDGGVLNEFLATMGF--EKISFLTSPEWTRTVYIGQVIWKELGW 199 Query: 194 SAIIYLAAISGISPELYEAAKIDGAGRFQRIKSITLPSIAGTVSILFILAVSGILNSNFD 253 S IIYL+AI+ + +LYEAA++DGAGR ++ +TLP+I + L IL + L+ F+ Sbjct: 200 STIIYLSAITAVDTQLYEAAEMDGAGRLRKTWHVTLPAIRPVIITLLILKIGQTLDLGFE 259 Query: 254 QIMVLRNSLNESASSVIDIYIYQTGLQNARFSYSTAVGLVKSVIAXXXXXISNSVTKRIN 313 + +L NSLN S + + D YIY GL+N + S+STA+GL K V+ ++N + K++ Sbjct: 260 HMYLLLNSLNRSVAEIFDTYIYTAGLKNGQLSFSTAMGLFKGVVGLFMVILANKIAKKLG 319 Query: 314 NTSLF 318 ++ Sbjct: 320 EDGVY 324 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 453,436,738 Number of extensions: 18597357 Number of successful extensions: 70978 Number of sequences better than 1.0e-05: 1050 Number of HSP's gapped: 70542 Number of HSP's successfully gapped: 1050 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)