BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0015.p (1595 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_763025.1| Conserved hypothetical protein [Vibrio vulnific... 333 3e-89 ref|NP_937692.1| conserved hypothetical protein [Vibrio vulnific... 332 3e-89 ref|NP_811876.1| chondroitinase AC precursor [Bacteroides thetai... 255 5e-66 pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium ... 239 5e-61 sp|Q59288|CSLA_PEDHE Chondroitinase AC precursor (Chondroitin AC... 238 7e-61 >ref|NP_763025.1| Conserved hypothetical protein [Vibrio vulnificus CMCP6] gb|AAO08015.1| Conserved hypothetical protein [Vibrio vulnificus CMCP6] Length = 839 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 220/675 (32%), Positives = 349/675 (51%), Gaps = 41/675 (6%) Query: 27 EMKLMKNRIVDFYVSKDIINDGTNGRVEWTFKSQAGTYLSSQNANGSWGDVDYASTTSSA 86 E+ + R+ + + N G+ T A Y + A+GSW D+DY T + Sbjct: 6 EVMTLSQRVAPDFAQQASRNADNKGQ---TLSGLATQYRDALLADGSWPDIDY--TIVAT 60 Query: 87 NGRAWSPYLALDRMQSMAQA-FADPKGPYYHNETLLGGIQKGLDYWFTVKPTSTNWWETG 145 + + +L DR++ +A A P+ Y + + YW++ T+ NWW Sbjct: 61 DEKPIREHL--DRIRVLAAAEHLFPQTGYAQAAI------EAMYYWYSADRTNKNWWWNE 112 Query: 146 IGKQLRLGKIALLCEGYLTAAQVSNIIGTLDSSPHTVDGANSSWYNQNYMIRGLLLEDVQ 205 IGKQLRLG AL+ L + + I G + S+P+ GAN + ++ + GLL D Sbjct: 113 IGKQLRLGPAALMLGSALPSDLKTLIQGDMPSAPYKT-GANRTDLSKAVIFGGLLANDAA 171 Query: 206 NVRNAVEAFNVLSNVTTTVTGIQSDMSFFMHGKTNYTTGYGRSFARDMSFWAYITSDTAF 265 V+ +E + V T G+Q+D SF HG YT GYG F SFWAY D + Sbjct: 172 QVQRGLEGI-AETIVITEAEGVQADYSFQQHGAQLYTGGYGEVFFDTASFWAYHVRDLQW 230 Query: 266 SYSEAAIDSLSSYLLDGTRYLVRGDVADL---GMGMNGPDWPDYASAALTFYEDPLQWMQ 322 +S ID LS Y L+G R++ D G G++ D ++ + Q++ Sbjct: 231 KFSPEQIDLLSDYFLEGVRWMNSHGTLDYNARGRGISRVQVVDKST-----LQQQSQYIA 285 Query: 323 VANPKRAGEFKSFLDNIRSFGTSTSNGLDANNITQ-WQTLVSSHMRNDYGITVKMSSKTV 381 +P+RA E + F ++ G Q W++ +S + ++ I VKM+S + Sbjct: 286 ALSPQRAQEAEQFRRHV------AGEGAGFEGFKQFWRSDYASKVGENHFIGVKMNSLRI 339 Query: 382 KGGEWRTINPSGYNLL-YWTPQGATAIQRTGDEYRPVYPLMDWAHVPGTTAPYVLTKDGN 440 + E + NLL W G+ I + GDEY ++P+ +WA VPG TAP K + Sbjct: 340 EPTE----AGNNENLLGNWLGFGSMFIMQRGDEYHNLFPVWNWALVPGVTAPQFAEKPAD 395 Query: 441 FNN---PKTFVGGVTNERYGATAFDFNKLSTSGKKGYFFFDDEMVALGAGIASTNAAPVH 497 + + +FVGGV++ RYG D N T KK +F F DEMVALGAGIAST V+ Sbjct: 396 WGSIVMNTSFVGGVSDGRYGVAVMDMNAYGTQAKKAWFSFKDEMVALGAGIASTRNEYVN 455 Query: 498 TTLNQSLAVGDVLVDGEVIADGTKQ-ANGRWAYNDKVGYVFPNPTDFQVKRETKTGQWSD 556 T++NQ+ G V VDG V G++ N W ++D +GYVFP + +T++G W D Sbjct: 456 TSVNQTRLKGPVTVDGAVYEKGSRALVNASWVHHDGIGYVFPAYWYGHMNNQTQSGNWYD 515 Query: 557 VITGSSTEPITKPIFSIWLDHGVKPADASYQYIVLPNKTPEEVGSYASENPIRILSNTPS 616 + G + E ++ +F + + H +P +ASYQYI++PN+T +V +YA ++PI +LSN+ + Sbjct: 516 INRGQANEVVSDEVFMLRIGHSWQPTNASYQYIIVPNRTASQVEAYAQQSPIAVLSNSNT 575 Query: 617 VQAVRHNSLGIAELLFYQPGTVTVRDGLTVTVDNPSMVIIDESVTPARISVANPETPGIT 676 +QAV H L + ++F+QPG++ + DG T++V S+V+ID+S ++++ P G Sbjct: 576 LQAVHHQGLNVTGVIFHQPGSINLHDGSTLSVSQASVVLIDQSAADPVVTLSTP-GQGTQ 634 Query: 677 VNVTLNRDGEKTTTT 691 V V+ ++ G TT Sbjct: 635 VQVSFDKGGVSKHTT 649 >ref|NP_937692.1| conserved hypothetical protein [Vibrio vulnificus YJ016] dbj|BAC97662.1| conserved hypothetical protein [Vibrio vulnificus YJ016] Length = 858 Score = 332 bits (852), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 222/676 (32%), Positives = 348/676 (51%), Gaps = 43/676 (6%) Query: 27 EMKLMKNRIVDFYVSKDIINDGTNGRVEWTFKSQAGTYLSSQNANGSWGDVDYASTTSSA 86 E+ + R+ + + N G+ T A Y + A+GSW D+DY + Sbjct: 25 EVMTLSQRVAPDFAQQASRNADNKGQ---TLSGLATQYRDALLADGSWPDIDYTIVATDE 81 Query: 87 NGRAWSPYLA-LDRMQSMAQA-FADPKGPYYHNETLLGGIQKGLDYWFTVKPTSTNWWET 144 P A LDR++ +A A P+ Y + + YW++ T+ NWW Sbjct: 82 K-----PIRAHLDRIRVLAAAEHLFPQTGYAQAAI------EAMYYWYSADRTNKNWWWN 130 Query: 145 GIGKQLRLGKIALLCEGYLTAAQVSNIIGTLDSSPHTVDGANSSWYNQNYMIRGLLLEDV 204 IGKQLRLG AL+ L + + I G + S+P+ GAN + ++ + GLL D Sbjct: 131 EIGKQLRLGPAALMLGSALPSDLKTLIQGDMPSAPYKT-GANRTDLSKAVIFGGLLANDA 189 Query: 205 QNVRNAVEAFNVLSNVTTTVTGIQSDMSFFMHGKTNYTTGYGRSFARDMSFWAYITSDTA 264 V+ +E + V T G+Q+D SF HG YT GYG F SFWAY D Sbjct: 190 AQVQRGLEGI-AETIVITEAEGVQADYSFQQHGAQLYTGGYGEVFFDTASFWAYHVRDLQ 248 Query: 265 FSYSEAAIDSLSSYLLDGTRYLVRGDVADL---GMGMNGPDWPDYASAALTFYEDPLQWM 321 + +S ID LS Y L+G R++ D G G++ D + T + L ++ Sbjct: 249 WKFSPEQIDLLSDYFLEGVRWMNSHGTLDYNARGRGISRVQVVDKS----TLQQQSL-YI 303 Query: 322 QVANPKRAGEFKSFLDNIRSFGTSTSNGLDANNITQ-WQTLVSSHMRNDYGITVKMSSKT 380 +P+RA E + F ++ G Q W++ +S + ++ I VKM+S Sbjct: 304 AALSPQRAQEAEQFRRHV------AGEGAGFEGFKQFWRSDYASKVGENHFIGVKMNSLR 357 Query: 381 VKGGEWRTINPSGYNLL-YWTPQGATAIQRTGDEYRPVYPLMDWAHVPGTTAPYVLTKDG 439 ++ E + NLL W G+ I + GDEY ++P+ +WA VPG TAP K Sbjct: 358 IEPTE----AGNNENLLGNWLGFGSMFIMQRGDEYHNLFPVWNWALVPGVTAPQFAEKPA 413 Query: 440 NFNN---PKTFVGGVTNERYGATAFDFNKLSTSGKKGYFFFDDEMVALGAGIASTNAAPV 496 ++ + +FVGGV++ RYG D N T KK +F F DEMVALGAGIAST + V Sbjct: 414 DWGSIVMNTSFVGGVSDGRYGVAVMDMNAYGTQAKKAWFSFKDEMVALGAGIASTRSEYV 473 Query: 497 HTTLNQSLAVGDVLVDGEVIADGTKQ-ANGRWAYNDKVGYVFPNPTDFQVKRETKTGQWS 555 +T++NQ+ G V VDG V G++ N W ++D +GYVFP + +T++G W Sbjct: 474 NTSVNQTRLNGPVTVDGAVYEKGSRALVNASWVHHDGIGYVFPAYWYGHMNNQTQSGNWY 533 Query: 556 DVITGSSTEPITKPIFSIWLDHGVKPADASYQYIVLPNKTPEEVGSYASENPIRILSNTP 615 D+ G + E ++ +F + + H +P +ASYQYI++PN+T +V +YA ++PI +LSN+ Sbjct: 534 DINRGQANEVVSDEVFMLRIGHSWQPTNASYQYIIVPNRTASQVEAYAQQSPIAVLSNSN 593 Query: 616 SVQAVRHNSLGIAELLFYQPGTVTVRDGLTVTVDNPSMVIIDESVTPARISVANPETPGI 675 ++QAV H L + ++F+QPG++ + DG T++V S+V+ID+S ++++ P G Sbjct: 594 TLQAVHHQGLNVTGVIFHQPGSINLHDGSTLSVSQASVVLIDQSAADPVVTLSTPGQ-GT 652 Query: 676 TVNVTLNRDGEKTTTT 691 V V+ ++ G TT Sbjct: 653 QVQVSFDKGGVSKHTT 668 >ref|NP_811876.1| chondroitinase AC precursor [Bacteroides thetaiotaomicron VPI-5482] gb|AAO78070.1| chondroitinase AC precursor [Bacteroides thetaiotaomicron VPI-5482] Length = 721 Score = 255 bits (652), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 194/652 (29%), Positives = 312/652 (47%), Gaps = 68/652 (10%) Query: 69 NANGSWGDVDYASTTSSANGRAWSPYLALDRMQSMAQAFADPKGPYYHNETLLGGIQKGL 128 + G + D+DYA + W P + +DR+ A+ PK YY NE L I KGL Sbjct: 64 DVQGCFIDIDYARRDRTN----WMPLIHVDRLYDFVFAYTHPKNSYYQNEDLYHKIVKGL 119 Query: 129 DYWFTVKPTSTNWWETGIGKQLRLGKIALLCEGYLTAAQVSNIIGTL--------DSSPH 180 +YW P NWW I + +LG LL + + Q+ ++ T P Sbjct: 120 EYWHHRNPHCNNWWYNQIAEPQKLG--ILLIQMRVGKRQIPEVLETKVLQRMRKDGGHPA 177 Query: 181 TVDGANSSWYNQNYMIRGLLLEDVQNVRNAVEAFNVLSNVTTTVT-GIQSDMSFFMHGKT 239 GAN + +++ R L ++ +++ AVE NV S ++ TV G Q D S+F HG Sbjct: 178 RWTGANRTDIALHWIYRACLQKNDVDLKTAVE--NVYSPLSYTVKEGFQHDNSYFQHGVQ 235 Query: 240 NYTTGYGRSFARDMSFWAYITSDTAFSYSEAAIDSLSSYLLDGTRY-LVRG-----DVAD 293 Y GYG + ++ A T T ++ + I L ++ GT Y ++RG DV Sbjct: 236 LYIGGYGDEILKGVTQVALYTKGTKYALDDERIQFLRHFMC-GTYYQVIRGQYMLFDV-- 292 Query: 294 LGMGMNGPDWPDYASAALTFYEDPLQWMQVANPKRAGEFKSFLDNIRSFGTSTSN-GLDA 352 LG G++ + + AAL F + L+ P E+ + + + G ++N G+ Sbjct: 293 LGRGVSRNNATQKSHAAL-FAKRMLE----LAPAHIDEYNAIIARLE--GKKSANYGIKP 345 Query: 353 NNITQWQTLVSSHMRNDYGITVKMSSKTVKGGEWRTINPSGYNL-LYWTPQGATAIQRTG 411 + ++ + H+R Y V+M S E+ +G NL Y+ G T I G Sbjct: 346 LHTHYFRGDYALHVRPHYTFDVRMVSNRTMRCEY----GNGENLKTYFMSDGCTNIVTEG 401 Query: 412 DEYRPVYPLMDWAHVPGTTAPYVLT-----KDGNFNNPKTFVGGVTNERYGATAFD---- 462 DEY ++P+ +W +PG TAP + T D F GGV++ YG + + Sbjct: 402 DEYARIFPVWNWNRIPGVTAPQLDTIPRTVIDWQTKGTSVFAGGVSDSLYGVSVYSYLDT 461 Query: 463 FNKLSTSGKKGYFFFDDEMVALGAGIASTNAAPVHTTLNQSLAVGDVLVDGEVIADGTKQ 522 + ++T+ KK +FFFDDE++ LGAG+ ST PV TT+NQ L L EVI +K+ Sbjct: 462 YADINTAAKKSWFFFDDEIICLGAGVNSTAGVPVCTTINQCL-----LSKKEVILSQSKK 516 Query: 523 ANG-----------RWAYNDKVGYVFPNPTDFQVKRETKTGQWSDVITGSSTEPITKPIF 571 + W ++ +GYVFP + + ++ +TG W + S + +F Sbjct: 517 QSMVKEGDFVYDSPEWVLHNGIGYVFPAGGNLFLSKKIQTGSWYSINHTESKNEQQQEVF 576 Query: 572 SIWLDHGVKPADASYQYIVLPNKTPEEVGSYASENPIRILSNTPSVQAVRHNSLGIAELL 631 ++ +HG P +A+Y YIV+P + ++P+ IL+NT S+Q VRH LGI +++ Sbjct: 577 TLGFNHGCNPRNATYAYIVVPGIHSARKMNNYRKSPVEILANTDSMQIVRHTKLGIWQMV 636 Query: 632 FYQPGTVTVRDG-LTVTVDNPSMVII-DESVTPARISVANPETPGITVNVTL 681 FY+ G T R+G L+V+VD ++I D A + +A+P + V L Sbjct: 637 FYKEG--TFRNGELSVSVDKACALMIKDGHSGNAELHIADPGQTQSCIKVEL 686 >pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum Length = 678 Score = 239 bits (609), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 178/623 (28%), Positives = 279/623 (44%), Gaps = 32/623 (5%) Query: 65 LSSQNANGSWGDVDYASTTSSANGRAWSPYLALDRMQSMAQAFADPKGPYYHNETLLGGI 124 L++ +GSW DV Y + W P L +++++ QA+ + YY ++ + I Sbjct: 32 LNTLQPDGSWKDVPYKDDAMTN----WLPNNHLLQLETIIQAYIEKDSHYYGDDKVFDQI 87 Query: 125 QKGLDYWFTVKPTSTNWWETGIGKQLRLGKIALLC---EGYLTAAQVSNIIGTLDS-SPH 180 K YW+ P S NWW I LG++ +L + L A V + + P Sbjct: 88 SKAFKYWYDSDPKSRNWWHNEIATPQALGEMLILMRYGKKPLDEALVHKLTERMKRGEPE 147 Query: 181 TVDGANSSWYNQNYMIRGLLLEDVQNVRNAVEAFNVLSNVTTTVTGIQSDMSFFMHGKTN 240 GAN + +Y R LL D + AV+ G+Q D S+ HG Sbjct: 148 KKTGANKTDIALHYFYRALLTSDEALLSFAVKELFYPVQFVHYEEGLQYDYSYLQHGPQL 207 Query: 241 YTTGYGRSFARDMSFWAYITSDTAFSYSEAAIDSLSSYLLDGTRYLVRGDVADLGMGMNG 300 + YG F + A DT ++ S + S Y D +RG D + G Sbjct: 208 QISSYGAVFITGVLKLANYVRDTPYALSTEKLAIFSKYYRDSYLKAIRGSYMDFNVEGRG 267 Query: 301 PDWPDYASAALTFYEDPLQWMQVANPKRAGEFKSFLDNIRSFGTSTSNG--LDANNITQW 358 PD + + + + VA + + D I ++ + G ++ + W Sbjct: 268 VSRPDILNK-----KAEKKRLLVAKMIDLKHTEEWADAIARTDSTVAAGYKIEPYHHQFW 322 Query: 359 QTLVSSHMRNDYGITVKMSSKTVKGGEWRTINPSGYNLL-YWTPQGATAIQRTGDEYRPV 417 H+R Y V+M SK + R+ + + NLL + GAT IQ G EY + Sbjct: 323 NGDYVQHLRPAYSFNVRMVSKRTR----RSESGNKENLLGRYLSDGATNIQLRGPEYYNI 378 Query: 418 YPLMDWAHVPGTTA-PYV----LTKDGNFNNPKTFVGGVTNERYGATAFDFNKLSTSGKK 472 P+ +W +PG T+ Y+ LTK F GGV++ YGA+A+ + S KK Sbjct: 379 MPVWEWDKIPGITSRDYLTDRPLTKLWGEQGSNDFAGGVSDGVYGASAYALDYDSLQAKK 438 Query: 473 GYFFFDDEMVALGAGIASTNAAPVHTTLNQSLAVGDVLVDGEVIADG---TKQANGR-WA 528 +FFFD E+V LGAGI S + TTLNQS G V+ G T +A G+ W Sbjct: 439 AWFFFDKEIVCLGAGINSNAPENITTTLNQSWLNGPVISTAGKTGRGKITTFKAQGQFWL 498 Query: 529 YNDKVGYVFPNPTDFQVKRETKTGQWSDVITGSSTEPITKPIFSIWLDHGVKPADASYQY 588 +D +GY FP + + +++ G W + S + ++ +F +W++HG +P +A Y Y Sbjct: 499 LHDAIGYYFPEGANLSLSTQSQKGNWFHINNSHSKDEVSGDVFKLWINHGARPENAQYAY 558 Query: 589 IVLPN-KTPEEVGSYASENPIRILSNTPSVQAVRHNSLGIAELLFYQPGTVTVRDGLTVT 647 IVLP PEE+ Y P ++L+NT +QAV H L + + +FY G ++V G+ + Sbjct: 559 IVLPGINKPEEIKKYNGTAP-KVLANTNQLQAVYHQQLDMVQAIFYTAGKLSVA-GIEIE 616 Query: 648 VDNPSMVIIDESVTPARISVANP 670 D P V+I I A+P Sbjct: 617 TDKPCAVLIKHINGKQVIWAADP 639 >sp|Q59288|CSLA_PEDHE Chondroitinase AC precursor (Chondroitin AC lyase) (Chondroitin sulfate AC lyase) (Chondroitin AC eliminase) pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The Structure Of Enzyme-Oligosaccharide Complexes And Mutagenesis pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The Structure Of Enzyme-Oligosaccharide Complexes And Mutagenesis pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The Structure Of Enzyme-Oligosaccharide Complexes And Mutagenesis pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The Structure Of Enzyme-Oligosaccharide Complexes And Mutagenesis gb|AAC83383.1| chondroitinase AC precursor [Pedobacter heparinus] Length = 700 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 178/623 (28%), Positives = 279/623 (44%), Gaps = 32/623 (5%) Query: 65 LSSQNANGSWGDVDYASTTSSANGRAWSPYLALDRMQSMAQAFADPKGPYYHNETLLGGI 124 L++ +GSW DV Y + W P L +++++ QA+ + YY ++ + I Sbjct: 54 LNTLQPDGSWKDVPYKDDAMTN----WLPNNHLLQLETIIQAYIEKDSHYYGDDKVFDQI 109 Query: 125 QKGLDYWFTVKPTSTNWWETGIGKQLRLGKIALLC---EGYLTAAQVSNIIGTLDS-SPH 180 K YW+ P S NWW I LG++ +L + L A V + + P Sbjct: 110 SKAFKYWYDSDPKSRNWWHNEIATPQALGEMLILMRYGKKPLDEALVHKLTERMKRGEPE 169 Query: 181 TVDGANSSWYNQNYMIRGLLLEDVQNVRNAVEAFNVLSNVTTTVTGIQSDMSFFMHGKTN 240 GAN + +Y R LL D + AV+ G+Q D S+ HG Sbjct: 170 KKTGANKTDIALHYFYRALLTSDEALLSFAVKELFYPVQFVHYEEGLQYDYSYLQHGPQL 229 Query: 241 YTTGYGRSFARDMSFWAYITSDTAFSYSEAAIDSLSSYLLDGTRYLVRGDVADLGMGMNG 300 + YG F + A DT ++ S + S Y D +RG D + G Sbjct: 230 QISSYGAVFITGVLKLANYVRDTPYALSTEKLAIFSKYYRDSYLKAIRGSYMDFNVEGRG 289 Query: 301 PDWPDYASAALTFYEDPLQWMQVANPKRAGEFKSFLDNIRSFGTSTSNG--LDANNITQW 358 PD + + + + VA + + D I ++ + G ++ + W Sbjct: 290 VSRPDILNK-----KAEKKRLLVAKMIDLKHTEEWADAIARTDSTVAAGYKIEPYHHQFW 344 Query: 359 QTLVSSHMRNDYGITVKMSSKTVKGGEWRTINPSGYNLL-YWTPQGATAIQRTGDEYRPV 417 H+R Y V+M SK + R+ + + NLL + GAT IQ G EY + Sbjct: 345 NGDYVQHLRPAYSFNVRMVSKRTR----RSESGNKENLLGRYLSDGATNIQLRGPEYYNI 400 Query: 418 YPLMDWAHVPGTTAP-YV----LTKDGNFNNPKTFVGGVTNERYGATAFDFNKLSTSGKK 472 P+ +W +PG T+ Y+ LTK F GGV++ YGA+A+ + S KK Sbjct: 401 MPVWEWDKIPGITSRDYLTDRPLTKLWGEQGSNDFAGGVSDGVYGASAYALDYDSLQAKK 460 Query: 473 GYFFFDDEMVALGAGIASTNAAPVHTTLNQSLAVGDVLVDGEVIADG---TKQANGR-WA 528 +FFFD E+V LGAGI S + TTLNQS G V+ G T +A G+ W Sbjct: 461 AWFFFDKEIVCLGAGINSNAPENITTTLNQSWLNGPVISTAGKTGRGKITTFKAQGQFWL 520 Query: 529 YNDKVGYVFPNPTDFQVKRETKTGQWSDVITGSSTEPITKPIFSIWLDHGVKPADASYQY 588 +D +GY FP + + +++ G W + S + ++ +F +W++HG +P +A Y Y Sbjct: 521 LHDAIGYYFPEGANLSLSTQSQKGNWFHINNSHSKDEVSGDVFKLWINHGARPENAQYAY 580 Query: 589 IVLPN-KTPEEVGSYASENPIRILSNTPSVQAVRHNSLGIAELLFYQPGTVTVRDGLTVT 647 IVLP PEE+ Y P ++L+NT +QAV H L + + +FY G ++V G+ + Sbjct: 581 IVLPGINKPEEIKKYNGTAP-KVLANTNQLQAVYHQQLDMVQAIFYTAGKLSVA-GIEIE 638 Query: 648 VDNPSMVIIDESVTPARISVANP 670 D P V+I I A+P Sbjct: 639 TDKPCAVLIKHINGKQVIWAADP 661 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.130 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 2,246,593,442 Number of extensions: 94056042 Number of successful extensions: 203287 Number of sequences better than 1.0e-05: 250 Number of HSP's gapped: 202570 Number of HSP's successfully gapped: 369 Length of query: 1595 Length of database: 757,237,578 Length adjustment: 139 Effective length of query: 1456 Effective length of database: 379,838,817 Effective search space: 553045317552 Effective search space used: 553045317552 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)