BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0011.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471451.1| similar to putative transport system integral m... 260 2e-68 ref|NP_465533.1| similar to putative transport system integral m... 259 6e-68 ref|ZP_00035280.1| COG4209: ABC-type polysaccharide transport sy... 245 1e-63 ref|NP_562998.1| probable ABC transporter [Clostridium perfringe... 243 4e-63 ref|NP_344637.1| ABC transporter, permease protein [Streptococcu... 236 4e-61 >ref|NP_471451.1| similar to putative transport system integral membrane protein [Listeria innocua] pir||AC1697 probable transport system integral membrane protein homolog lin2117 [imported] - Listeria innocua (strain Clip11262) emb|CAC97347.1| lin2117 [Listeria innocua] Length = 309 Score = 260 bits (665), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 128/291 (43%), Positives = 191/291 (65%), Gaps = 5/291 (1%) Query: 29 VPGLLFFLVFSYFPIYGIMIAFKDYN-----FAKGITGSDWVGFKNFDYFFTSDDFWVIL 83 +PGLL+FLVFSY P++G +IAFKDY F I SDWVG +NF + F ++D ++I Sbjct: 19 LPGLLWFLVFSYLPMFGTVIAFKDYKIDGKGFLSSIMNSDWVGLENFKFLFQTNDAFIIT 78 Query: 84 RNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLF 143 RNT++ N++FI+ + +A++FN + NK +I Q+ + P+F+SW+VV + S Sbjct: 79 RNTVLYNLVFIIVGLFLGVALAIVFNSLLNKRGAKIYQTGMLFPHFLSWVVVSYFLFSFL 138 Query: 144 GGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLY 203 + ++N L G +PV+W + K WP+IL ++ VW+G GY SI++LAAI GI Y Sbjct: 139 SEDSGLMNNILLAFGQDPVSWYNDPKYWPFILIMMNVWKGLGYGSIVYLAAIAGIDRTYY 198 Query: 204 EAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTD 263 EAA IDGA K Q + +T+P L P ++I+T+L VGKIFN DF + Y + ++ LYP TD Sbjct: 199 EAAMIDGAGKWQQIRHVTIPALTPLMVILTILNVGKIFNSDFGLFYQLPRNSGPLYPVTD 258 Query: 264 VIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESALF 314 VIDT+V+R + L D MS+A G +QSI+G I V+ N+I ++++ E LF Sbjct: 259 VIDTYVYRGLTSLGDMSMSAAAGFYQSIVGFILVLLTNYIVKKINPEYGLF 309 >ref|NP_465533.1| similar to putative transport system integral membrane protein [Listeria monocytogenes EGD-e] pir||AI1325 probable transport system integral membrane protein homolog lmo2009 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00087.1| lmo2009 [Listeria monocytogenes] Length = 309 Score = 259 bits (662), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 127/291 (43%), Positives = 191/291 (65%), Gaps = 5/291 (1%) Query: 29 VPGLLFFLVFSYFPIYGIMIAFKDYN-----FAKGITGSDWVGFKNFDYFFTSDDFWVIL 83 +PG+L+FLVFSY P++G +IAFKDY F I SDWVG +NF + F ++D ++I Sbjct: 19 LPGVLWFLVFSYLPMFGTVIAFKDYKIDGKGFLSSIMSSDWVGLENFKFLFQTNDAFIIT 78 Query: 84 RNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLF 143 RNT++ N++FI+ + +A++FN + NK +I Q+ + P+F+SW+VV + S Sbjct: 79 RNTVLYNLVFIIVGLFLGVALAIIFNSLLNKRGAKIYQTGMLFPHFLSWVVVSYFLFSFL 138 Query: 144 GGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLY 203 + ++N L G +PV+W + K WP+IL ++ VW+G GY SI++LAAI GI Y Sbjct: 139 SEDSGLMNNILLAFGQDPVSWYNDPKYWPFILIMMNVWKGLGYGSIVYLAAIAGIDRTYY 198 Query: 204 EAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTD 263 EAA IDGA K Q + +T+P L P ++I+T+L VGKIFN DF + Y + ++ LYP TD Sbjct: 199 EAAMIDGAGKWQQIRHVTIPALTPLMVILTILNVGKIFNSDFGLFYQLPRNSGPLYPVTD 258 Query: 264 VIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESALF 314 VIDT+V+R + L D MS+A G +QSI+G I V+ N+I ++++ E LF Sbjct: 259 VIDTYVYRGLTSLGDMSMSAAAGFYQSIVGFILVLLTNYIVKKINPEYGLF 309 >ref|ZP_00035280.1| COG4209: ABC-type polysaccharide transport system, permease component [Enterococcus faecium] Length = 315 Score = 245 bits (625), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/314 (38%), Positives = 192/314 (61%), Gaps = 7/314 (2%) Query: 8 SKRSKLKHIVQNPFLYXXX--XAVPGLLFFLVFSYFPIYGIMIAFKDYN-----FAKGIT 60 KR H N + Y AVPG+L+ + F Y P+ ++AFK+++ F + Sbjct: 2 KKRKGFNHFFMNLWRYKALVLMAVPGMLWMIFFFYIPVMANVVAFKNFHISADGFLASLR 61 Query: 61 GSDWVGFKNFDYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRIS 120 S WVG++NF + F+SD ++I +NT++ N+ FIL + +++ A++ +E+RNK ++ Sbjct: 62 ESPWVGWENFKFLFSSDQAFLITKNTILYNVAFILLNLLISVVFAIIMSELRNKRLVKVY 121 Query: 121 QSLIFLPYFMSWIVVGMIVQSLFGGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRV 180 Q++ LPYF+SW+++ V + ++ + N W+ G E VNW E K WP+IL I Sbjct: 122 QTMSLLPYFLSWVIISYFVYAFLSPDKGIFNQWITGHGGEAVNWYNEPKYWPFILVFIGT 181 Query: 181 WQGAGYLSIIFLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKI 240 W+G GY SII+ A++ GI YEAA +DGASK Q + +T+P L+P + I+T+LAVG I Sbjct: 182 WKGIGYNSIIYFASVMGIDPTYYEAAMVDGASKWQQIKHVTIPQLIPLMTILTILAVGNI 241 Query: 241 FNGDFAMIYAIIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITA 300 F DF + Y I ++ LY T V+DT+++ + DFGM++A GL+QS++G + ++ Sbjct: 242 FRADFGLFYNIPRNSGALYDVTQVLDTYIYNGLTSTGDFGMTAAAGLYQSVVGFVLLMIT 301 Query: 301 NWITRRVSKESALF 314 N I RR +SALF Sbjct: 302 NTIARRFDSDSALF 315 >ref|NP_562998.1| probable ABC transporter [Clostridium perfringens] dbj|BAB81788.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 322 Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 125/309 (40%), Positives = 197/309 (63%), Gaps = 6/309 (1%) Query: 10 RSKLKHIVQNPFLYXXXXAVPGLLFFLVFSYFPIYGIMIAFKDY----NFAKGITGSDWV 65 + ++K N L +PG ++FLVF+Y P++G+++AFK + F + + S WV Sbjct: 16 KDRMKRFRNNKEL--LLLTIPGAIWFLVFAYLPMFGVIVAFKRWRIHGGFFESLMNSKWV 73 Query: 66 GFKNFDYFFTSDDFWVILRNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIF 125 GF NF + F S D W+I +NT++ NI+FI+ V + +A++ NE+ NK + QS +F Sbjct: 74 GFDNFKFLFQSSDAWLITKNTVLYNIVFIILGIVLPVTLAILLNELLNKKLAKFYQSSMF 133 Query: 126 LPYFMSWIVVGMIVQSLFGGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAG 185 LPYF+SW+VV + + E+ +N LQ +G + ++W E K P+I+ + W+ G Sbjct: 134 LPYFLSWVVVSYCLYAFLSPEKGYVNGILQSMGGKGISWYTEPKYLPFIIIFMSQWKAVG 193 Query: 186 YLSIIFLAAITGISEDLYEAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDF 245 Y ++++LA+I GI + YEAA IDGASK Q + IT+PLL P ++IM + ++G +F GD Sbjct: 194 YGTVVYLASICGIDKSYYEAAMIDGASKFQQIKYITVPLLKPVMIIMFITSIGGMFRGDL 253 Query: 246 AMIYAIIGDNSMLYPTTDVIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITR 305 + Y + D+ LYP T+VIDT+V+R + L D GMSSA L+QS +GLI ++T+N I R Sbjct: 254 GLFYQLPKDSGALYPVTNVIDTYVYRGLMNLGDIGMSSAASLYQSFVGLILIVTSNAIVR 313 Query: 306 RVSKESALF 314 +V +E+A F Sbjct: 314 KVDEENAFF 322 >ref|NP_344637.1| ABC transporter, permease protein [Streptococcus pneumoniae TIGR4] ref|NP_357675.1| ABC transporter membrane-spanning permease - sugar transport [Streptococcus pneumoniae R6] pir||D95010 ABC transporter, permease protein SP0090 [imported] - Streptococcus pneumoniae (strain TIGR4) pir||A97882 hypothetical protein ABC-MSP [imported] - Streptococcus pneumoniae (strain R6) gb|AAK74277.1| ABC transporter, permease protein [Streptococcus pneumoniae TIGR4] gb|AAK98885.1| ABC transporter membrane-spanning permease - sugar transport [Streptococcus pneumoniae R6] Length = 319 Score = 236 bits (603), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 184/291 (63%), Gaps = 5/291 (1%) Query: 29 VPGLLFFLVFSYFPIYGIMIAFKDYN-----FAKGITGSDWVGFKNFDYFFTSDDFWVIL 83 +PG L+ ++F Y P++G ++AFKDY+ F I S WVG NF + F+S D ++I Sbjct: 29 LPGALWLILFFYIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGLDNFRFLFSSRDAFIIT 88 Query: 84 RNTLVLNILFILFTTVAAILIALMFNEIRNKYFKRISQSLIFLPYFMSWIVVGMIVQSLF 143 RNT++ N+ FI V ++ IA++ +E+R+K +I Q+ + PYF+SW+++ + Sbjct: 89 RNTVLYNLGFIFLGLVVSVGIAIILSELRSKRMVKIFQTSMLFPYFLSWVIISFFTDAFL 148 Query: 144 GGEEPMINTWLQYIGLEPVNWMFESKLWPYILTVIRVWQGAGYLSIIFLAAITGISEDLY 203 ++ + N L+ +GL+ VN+ + +WPY+L + +W+G GY S+++ A I GI Y Sbjct: 149 NIDKGVFNHLLESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYSSVMYYATIMGIDPTYY 208 Query: 204 EAARIDGASKLQIVLRITLPLLVPTIMIMTLLAVGKIFNGDFAMIYAIIGDNSMLYPTTD 263 EAA +DGASK Q + +T+P L P + ++T+LAVG IF DF + Y I + LY T+ Sbjct: 209 EAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNIFRADFGLFYQIPHNAGQLYNVTN 268 Query: 264 VIDTFVFRSMRQLHDFGMSSAVGLFQSIMGLIFVITANWITRRVSKESALF 314 V+D +VF + Q D GM++A GL+QS++GLI VI +N + RRV SALF Sbjct: 269 VLDVYVFNGLTQTADIGMAAAAGLYQSVVGLILVILSNLLARRVDPNSALF 319 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.145 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 446,974,221 Number of extensions: 18414949 Number of successful extensions: 67643 Number of sequences better than 1.0e-05: 1187 Number of HSP's gapped: 66806 Number of HSP's successfully gapped: 1188 Length of query: 314 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 189 Effective length of database: 417,850,203 Effective search space: 78973688367 Effective search space used: 78973688367 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 126 (53.1 bits)