BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0010.p (759 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241349.1| transcriptional regulator (AraC/XylS family) [B... 86 3e-15 ref|NP_390893.1| similar to transcriptional regulator (AraC/XylS... 82 5e-14 ref|NP_388582.1| similar to transcriptional regulator (AraC/XylS... 77 2e-12 ref|NP_241989.1| BH1123~unknown conserved protein [Bacillus halo... 69 4e-10 ref|ZP_00181445.1| hypothetical protein Mther052901 [Moorella th... 67 1e-09 >ref|NP_241349.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans] pir||C83710 transcription regulator (AraC/XylS family) BH0483 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04202.1| transcriptional regulator (AraC/XylS family) [Bacillus halodurans] Length = 769 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 107/465 (23%), Positives = 210/465 (45%), Gaps = 42/465 (9%) Query: 305 SKRVYSPIQEL---ISRVMRQHQAEKPGLGYSTNELD----YLSNVFIDQRNQINELTEQ 357 S+R+Y P+QEL I+ A+KP +E + ++ NV +D N++ E Sbjct: 322 SRRIYRPVQELYQMITATFSAGSAKKP----PKDEFELIHAHIHNV-LDLNNELEE---- 372 Query: 358 WRLNKFLGRERFLRDF----LGETYHSAEEIGSQFLEWGIDLPKD--QLSVAIFRIDHFS 411 K G+ + L+ F L + + S EI +++ + PKD QL V +ID Sbjct: 373 ----KLQGQIKQLKQFFVLNLIKGHMSPSEIETKYETF--QYPKDWRQLHVLTLQIDSLE 426 Query: 412 EFSETYPEKDRRLLRFAMSNIIQESLQSSKHKLQTVDMGDDHVAVVLSAPLSEEYAK--- 468 Y ++++ +L F+++N++ E+L +L T + ++ V ++L + +E + Sbjct: 427 --GTKYAKEEKDVLLFSINNLV-ETLIPEVERL-TPALLNNTVVLILLTNVDQEQKRDGF 482 Query: 469 ---KLQVSQQLIEQYLSVGTTAAWGRILPSLTDMHEIYMETYELTQERFRFGHRALIVKA 525 K + + Q L + + +T E Y E E + R + G +++I + Sbjct: 483 VREKAEAIMNEVRQQLDISVSIGVSLPYDDITKTQEAYDEGIEALKYRIKLGCQSVIFFS 542 Query: 526 WLPDAPGELYHLPVNKERQIAQALPKGNADTVLEVIRSAVGKL--RGMPYFECKMSLITL 583 L + P +E ++ AL G+ V + + + + + + + + ++SL+ L Sbjct: 543 NLAHTHSFHTYYPKQQENELFDALKLGDKSNVKDHLDALIDGIFQKDLHPSQYQISLLRL 602 Query: 584 FMDIRRLMQEHSGQPLPSSWGLTSIEKQITQQETMENVVPWIEALVTKTLEDIVAARSLS 643 + +L+Q G + ++ Q+ +T++ V W + VA R S Sbjct: 603 LNNTIQLLQT-LGIDSVDVYDKKTLFDQLFSLQTIDEVKQWFFTKLIAPSVHTVAERMDS 661 Query: 644 KNVALIEQADRFIEEQLTDPNLSAKMLADHLGLSVNYFRSLYKAETNQSITDKISEKRLN 703 + + +Q I+ + D L+ + +A+ L + NY S+++ ETN S ++ +S RL Sbjct: 662 QYRTISDQIIHIIQNEF-DMELTLESIAERLHYNPNYLSSIFRKETNISFSEYLSSYRLA 720 Query: 704 FICQELLASDSPIEPIVQNSGFSSLNTFYSIFKKMYGMTPAQYRK 748 + LL + PI I + + + F FKK GMTP +YR+ Sbjct: 721 MAKKWLLETSMPIREIAERLCYGNSQNFIRSFKKKEGMTPGKYRQ 765 >ref|NP_390893.1| similar to transcriptional regulator (AraC/XylS family) [Bacillus subtilis] pir||C69990 transcription regulator AraC/XylS family homolog ytdP - Bacillus subtilis emb|CAB14993.1| ytdP [Bacillus subtilis subsp. subtilis str. 168] Length = 772 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 98/455 (21%), Positives = 194/455 (42%), Gaps = 16/455 (3%) Query: 305 SKRVYSPIQELISRVMRQHQAEKPGLGYSTNELDYLSNVFIDQRNQINELTEQWRLNKFL 364 S+ Y PI+ L R H A + NE + + F +++ ++L E + Sbjct: 324 SRHFYKPIRVLYESFAR-HGAIQEKQQPPQNEFELIEQSFKQLKDRNDDLEETMKQQATH 382 Query: 365 GRERFL-RDFLGETYHSAEEIGSQFLEWGIDLPKDQLSVAIFRIDHFSEFSETYPEKDRR 423 ++ F+ R LG+ + EE+ ++F G+ L++ + +ID + Y +KD Sbjct: 383 LQQYFMVRLMLGKL--TDEEVDNRFESLGLKQNWRHLALLVLQIDTLNH--TPYEKKDMD 438 Query: 424 LLRFAMSNIIQESLQSSKHKLQTVDMGDDHVAVVLSAPLSEEYAKKLQVSQQLI----EQ 479 LL FA++++I+ ++ + KH V ++ + EE+ +L + ++I E Sbjct: 439 LLLFAVNSLIERNIPTDKHLAPAVVDKQQATILINQSGTKEEFMAELNETARMIQEKAEA 498 Query: 480 YLSVGTTAAWGRILPSLTDMHEIYMETYELTQERFRFGHRALIVKAWLPDAPGELYHLPV 539 L + + + LT Y E E + R + ++++I L H P Sbjct: 499 ELQLSVSIGISQPFDVLTKAKTAYAEGSEALKYRLKAENKSIIFYEDLDQKKTFKTHFPK 558 Query: 540 NKERQIAQALPKGN---ADTVLEVIRSAVGKLRGMPYFECKMSLITLFMDIRRLMQEHSG 596 + ++ A+ G+ AD L I A+ PY + ++++ + LM G Sbjct: 559 QLQHELFDAVKAGDKEKADKCLHAILQAIFTQNTNPY-QFQIAIARFLNHVIELMHV-LG 616 Query: 597 QPLPSSWGLTSIEKQITQQETMENVVPWIEALVTKTLEDIVAARSLSKNVALIEQADRFI 656 L + QI + +T E+ W++ + D V AR+ ++ + + I Sbjct: 617 IELFELEENKMLYDQIFELKTFEDTENWLKNEFIDPMTDKVNARADAQYKNISDNIIHII 676 Query: 657 EEQLTDPNLSAKMLADHLGLSVNYFRSLYKAETNQSITDKISEKRLNFICQELLASDSPI 716 + + L+ +A L + NY S++K E S ++ +S R + L +D + Sbjct: 677 HHEF-ESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYRHHMAKSWLAETDMAV 735 Query: 717 EPIVQNSGFSSLNTFYSIFKKMYGMTPAQYRKKHR 751 + I + + + F FKK+ G+TP YR++ R Sbjct: 736 KDIAEKLKYKNSQNFIRSFKKLEGITPGNYRQQKR 770 >ref|NP_388582.1| similar to transcriptional regulator (AraC/XylS family) [Bacillus subtilis] pir||B69797 transcription regulator AraC/XylS family homolog yesS - Bacillus subtilis emb|CAB12520.1| yesS [Bacillus subtilis subsp. subtilis str. 168] Length = 761 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 132/696 (18%), Positives = 275/696 (39%), Gaps = 31/696 (4%) Query: 65 NDSTLKVYALSDQYSDFE-TFEVWSRLMDIKNANPAIDSVYLINDYTNTVVDSRLGLNDA 123 + S + A D DF ++++ +L +++ P I+ + + +V S + Sbjct: 85 DSSLMNGLAERDLEKDFTFSYQLTKKLFLLRDQQPLIEQASIFLNSPRPLVLS----PEY 140 Query: 124 EAFYDQDIIKRLRNPVTANHSVLIPRTLSLPLTGNKPKEVTTIIRFYEKGSSISAFVMNV 183 A +Q+ +++ R+ + ++HS+ R+ GN+ + I EK A ++ V Sbjct: 141 SALTEQEALRKYRSLLASDHSIYWKRS------GNQAMLIQLIPGAAEK--PFGAIMLAV 192 Query: 184 DTDNLMTLLQNNSNYANRSVTVLNDRDETVYSSTPLNQEQ--IAELRNHGSKGASGWKLF 241 D + ++LQ+ S Y + S +L+ E ++ + E+ + E++ ++ F Sbjct: 193 DPKEMESILQSLSPYPDGSALLLDQNREVLFHEGEKDFEKTLLHEIKKQPAENGH----F 248 Query: 242 QPRTQGEQLMVYASASIKGIQDWTFIETIPKSVILGKITVLRNXXXXXXXXXXXXXXXXI 301 Q +G+ V + Q WTF+ P S I + L Sbjct: 249 QMEWKGKVYSVSFGEMNRMHQQWTFVSAAPLSAITAPMVFLSKVIIVMLVICIGLAVCMT 308 Query: 302 VLISKRVYSPIQELISRVMRQHQAEKPGLGYSTNELDYLSNVFIDQRNQINELTEQWRLN 361 SK++Y PIQ L+ + +K +E ++ + D + +L +Q Sbjct: 309 WYASKKIYRPIQHLLG--LFTGGEKKTWQASGQDEFKWIEKRWQDLSLESRKLQQQLLRQ 366 Query: 362 KFLGRERFLRDFLGETYHSAEEIGSQFL--EWGIDLPKDQLSVAIFRIDHFSEFSETYPE 419 ++ FL+ L ++ E +F E G ++ + V ++ + E Sbjct: 367 TPHMKKSFLQHLLQSDFYYDNEESLRFRMEEAGWNIGGNVFHVLDLQVTGLRCEKSIFRE 426 Query: 420 KDRRLLRFAMSNIIQESLQSSKHKLQTVDMGDDHVAVVLSAPLSEEYAKKLQVSQQLIEQ 479 D +L F ++NI +E +L +D+G V V++ S + + + Sbjct: 427 GDEQLAVFTLTNIAEELAAKRVFQLSILDIGRLSVTVLVMKTNSSDLKAYITELARQFGD 486 Query: 480 YLSVGTTAAWGRILPSLTDMHEIYMETYELTQERFRFGHRALIV--KAWLPDAPGELYHL 537 + T+ +T++ ++ + + + R +F +R ++ +A P + Sbjct: 487 VTGLCLTSTLSSKTERVTEIPSLFQDV-KCGKSRRKFANRDQVIDLQADFPRDEQFAPYY 545 Query: 538 PVNKERQIAQALPKGNADTVLEVIRSAVGKLRGMPYFE--CKMSLITLFMDIRRLMQEHS 595 P E+QI Q + E+I + +L + +LI LF I+ + HS Sbjct: 546 PFELEKQIVQTIRLERKQEAKELIDGCMKELSEKAAIDRHVHSALIQLFSRIQEDIL-HS 604 Query: 596 GQPLPSSWGLTSIEKQITQQETMENVVPWIEALVTKTLEDIVAARSLSKNVALIEQADRF 655 G + + I++ W+ +V + R + L E+ Sbjct: 605 GLNPSELFQHRNPFLDISELREPNEAAAWLMDVVVTPYLSKLEGRKNRQQKQLAERVIAM 664 Query: 656 IEEQLTDPNLSAKMLADHLGLSVNYFRSLYKAETNQSITDKISEKRLNFICQELLASDSP 715 I EQ ++S + AD LG++ +K T + D +++ R+ + L+ ++ Sbjct: 665 IHEQYM-ADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKELLVNTNKK 723 Query: 716 IEPIVQNSGFSSLNTFYSIFKKMYGMTPAQYRKKHR 751 I + + G+ N F IFKK GM P +R+ ++ Sbjct: 724 IHDVSEEVGYRH-NYFNRIFKKQVGMPPGVFRQMYQ 758 >ref|NP_241989.1| BH1123~unknown conserved protein [Bacillus halodurans] pir||C83790 hypothetical protein BH1123 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04842.1| BH1123~unknown conserved protein [Bacillus halodurans] Length = 526 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 102/420 (24%), Positives = 178/420 (42%), Gaps = 52/420 (12%) Query: 347 QRNQINELTEQWRLNKFLGRERFLRDFLGETYHSAEEIGSQFLEWGIDLPKDQLSVAIFR 406 Q+ + ELT + + + L +++ L + E I +FL I KDQ +A Sbjct: 129 QQGYLQELTNKVKRYEPLVETEWMKSLLTGRLRNGE-IPEEFLA-KITKWKDQQHIACSL 186 Query: 407 IDHFSEFSETYPEKDRRLLRFAMSNIIQESLQSSKHKLQTVDMGDDHVAV---------- 456 + E P D L R+++ +I+E L + ++M A+ Sbjct: 187 TYDGPQNKELKP-ADWYLFRYSVHKMIREVLNGYPIDFRYLEMDAYRSALCLHVNKSVSE 245 Query: 457 -VLSAPLSEEYAKKLQVSQQLIEQYLSVGTTAAWGRILPSLTDMHEIYMETYELTQERFR 515 VLS L E K QV Q + + +V TT +GR+ TD+ E + E + + F Sbjct: 246 PVLSCMLME---IKDQVEQGIYSSF-NVKTTVHYGRVKEDWTDLSESFHEAC-MESQSFP 300 Query: 516 FGHRALIVKAWLPDAPGELYHLPVNKERQIAQALPKGNADTVLEVIRSAVGKLRGMPY-- 573 G+ P G P+ +++ A+ +A EV+ AVG L +PY Sbjct: 301 LGN---------PYEDGTRATFPMESSQKLYDAIRYADATRAKEVLEEAVGVLGEVPYST 351 Query: 574 ---FECKMSLITL----FMDIRRLMQEHSGQPLPSSWGLTSIEKQITQQETMENVVPWIE 626 ++ + + T+ DI L+QE + + LT KQ QE WI Sbjct: 352 LVGYKVGIEIWTIITYSLYDIGILIQEMFDEDFDLAQHLT---KQGNWQE-------WIR 401 Query: 627 ALVTKTLEDIVAARSLSKNVA---LIEQADRFIEEQLTDPNLSAKMLADHLGLSVNYFRS 683 L + +E I + +N+ LIEQ +IE+ L + N++ + +AD L +S NY Sbjct: 402 FLCEQ-IEHICYHQQWDENIKHKQLIEQVMIYIEKHLAE-NITLQDIADELYISRNYLGQ 459 Query: 684 LYKAETNQSITDKISEKRLNFICQELLASDSPIEPIVQNSGFSSLNTFYSIFKKMYGMTP 743 ++K +S + ++ R+ + + + I + + G+ + F ++FKK G TP Sbjct: 460 IFKKVVGESFKNYVTRLRMEKAKKMIQEGNFLIYEVSEKVGYVNPAYFTTMFKKYTGYTP 519 >ref|ZP_00181445.1| hypothetical protein Mther052901 [Moorella thermoacetica ATCC 39073] Length = 283 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 79/141 (56%), Gaps = 1/141 (0%) Query: 610 KQITQQETMENVVPWIEALVTKTLEDIVAARSLSKNVALIEQADRFIEEQLTDPNLSAKM 669 ++I + +T+E V W+ A+ +E ++A R+ S+ +I++ +I++ + +LS K Sbjct: 139 REIDEADTVEKAVLWLLAVGNAFIE-LIAERNSSEGEGIIDRVVEYIQKNYSSESLSVKE 197 Query: 670 LADHLGLSVNYFRSLYKAETNQSITDKISEKRLNFICQELLASDSPIEPIVQNSGFSSLN 729 +A LS Y L+K + S+T+ I++ R+ L ++ IE + +GF + Sbjct: 198 IARASYLSPAYLGQLFKKKMGYSLTEHINKVRIEQAKLLLRQTEQTIESVAIQTGFKERS 257 Query: 730 TFYSIFKKMYGMTPAQYRKKH 750 F +FKK+ G++P +YR+K+ Sbjct: 258 YFCKVFKKITGLSPNEYRRKN 278 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,033,762,842 Number of extensions: 41136003 Number of successful extensions: 124816 Number of sequences better than 1.0e-05: 93 Number of HSP's gapped: 124964 Number of HSP's successfully gapped: 93 Length of query: 759 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 626 Effective length of database: 396,129,411 Effective search space: 247977011286 Effective search space used: 247977011286 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)