BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0001.p (139 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00100101.1| COG1131: ABC-type multidrug transport system,... 112 2e-24 ref|NP_629589.1| putative ABC transporter, ATP-binding subunit [... 84 1e-15 gb|EAK32680.1| unknown [environmental sequence] 78 8e-14 ref|NP_835016.1| ABC transporter ATP-binding protein [Bacillus c... 77 8e-14 ref|NP_981777.1| ABC transporter, ATP-binding protein [Bacillus ... 77 1e-13 >ref|ZP_00100101.1| COG1131: ABC-type multidrug transport system, ATPase component [Desulfitobacterium hafniense] Length = 261 Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 81/119 (68%) Query: 3 LKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVIV 62 ++V NL +Y KAV+ I+ + G+ FGLLGANGAGKS+TI +LG +K + I+ Sbjct: 19 IEVKNLCKSYDHIKAVENINISLCRGEVFGLLGANGAGKSTTIECILGTKKQDSGSIAIL 78 Query: 63 GKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121 G +P + RK +FE+VGVQFQE ++QDK+ V++ C +LYK + + LL+ FGL+DK Sbjct: 79 GMNPQQERKNLFERVGVQFQEANYQDKIKVAELCEVTAALYKSSQNYGPLLKQFGLSDK 137 >ref|NP_629589.1| putative ABC transporter, ATP-binding subunit [Streptomyces coelicolor A3(2)] emb|CAB76006.1| putative ABC transporter, ATP-binding subunit [Streptomyces coelicolor A3(2)] Length = 312 Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 67/117 (57%) Query: 2 VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61 V++V +L +YG + VD +SF V+ G+ FG+LG NGAGK++T+ V G+ + + Sbjct: 15 VIEVTDLRKSYGGRPVVDGVSFAVEEGEIFGVLGPNGAGKTTTVECVEGLRVPDAGRVRV 74 Query: 62 VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGL 118 G P+ + + + E +G Q Q++ Q KLTV +A + + Y K AD L + L Sbjct: 75 TGLDPVADHRRVAEVLGAQLQQSELQPKLTVREALELYAAFYPKPADWRPLAERLDL 131 >gb|EAK32680.1| unknown [environmental sequence] Length = 169 Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 71/122 (58%) Query: 2 VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61 V++V L +YG+ AV+ +SF V G+ FG+LG NGAGK++T+ + G+ + E+ I Sbjct: 4 VVQVSGLNKSYGKFVAVNNVSFNVLEGEVFGILGPNGAGKTTTLEIIEGLLSYSSGEVTI 63 Query: 62 VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121 +G ++ K I Q+G+Q Q + + D L +++ + S+YK + LL GLA K Sbjct: 64 LGLDLRKHSKNIKSQLGIQLQSSAYFDYLNLTEILNLFGSMYKDARNSTDLLNEVGLAQK 123 Query: 122 KQ 123 + Sbjct: 124 SK 125 >ref|NP_835016.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP12217.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 300 Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 71/126 (56%), Gaps = 2/126 (1%) Query: 2 VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61 +++V ++ T+ K AV+ +SF V G+ LLG NGAGK++T++ +LG++ T ++ I Sbjct: 4 IIEVNGVSKTFKHKNAVNNVSFHVNKGEIVALLGPNGAGKTTTMSMMLGLKDPTEGKVFI 63 Query: 62 VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121 GKSP +++ +G QE D +TV +A ++S Y + LLQ L + Sbjct: 64 FGKSP--KHRDVRNSLGAMLQEVSVIDSITVEEAIELFRSYYTNPIAIETLLQLSNLESE 121 Query: 122 KQQPGE 127 ++Q E Sbjct: 122 RKQRCE 127 >ref|NP_981777.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS44385.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 300 Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 2/126 (1%) Query: 2 VLKVGNLTVTYGQKKAVDLISFEVKPGQAFGLLGANGAGKSSTIAAVLGIEKSTYDELVI 61 +++V +++ T+ KKAV+ +SF V G+ LLG NGAGK++T++ +LG++ T + I Sbjct: 4 IIEVNSVSKTFKHKKAVNNVSFHVNKGEIVALLGPNGAGKTTTMSMMLGLKDPTEGTVSI 63 Query: 62 VGKSPIRNRKEIFEQVGVQFQETHFQDKLTVSDACAQWQSLYKKTADLPALLQTFGLADK 121 GKSP +++ +G QE D +TV +A ++S Y LLQ L + Sbjct: 64 FGKSP--KHRDVRNSLGAMLQEVSVIDSITVEEAIELFRSYYTNPIAKETLLQLSNLKSE 121 Query: 122 KQQPGE 127 ++Q E Sbjct: 122 RKQRCE 127 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 197,729,750 Number of extensions: 7204466 Number of successful extensions: 47978 Number of sequences better than 1.0e-05: 1134 Number of HSP's gapped: 48811 Number of HSP's successfully gapped: 1138 Length of query: 139 Length of database: 757,237,578 Length adjustment: 100 Effective length of query: 39 Effective length of database: 485,727,678 Effective search space: 18943379442 Effective search space used: 18943379442 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)