BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0024.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ23679.1| glucose-1-phosphate thymidyltransferase [Geobacil... 432 e-120 gb|AAG09532.1| glucose-1-phosphate thymidylyltransferase [Salmon... 422 e-117 ref|ZP_00045859.1| COG1209: dTDP-glucose pyrophosphorylase [Lact... 421 e-117 gb|AAK27854.2| glucose 1-phosphate thymidyltransferase [Aneurini... 421 e-116 ref|NP_815856.1| glucose-1-phosphate thymidylyltransferase [Ente... 419 e-116 >gb|AAQ23679.1| glucose-1-phosphate thymidyltransferase [Geobacillus stearothermophilus] Length = 295 Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/289 (69%), Positives = 242/289 (83%) Query: 25 MKGIILAGGSGTRLYPLTMVTSKQLLPVYDKPMIYYPLSTLMLAGIKEILIISTAEDTPR 84 MKGIILAGGSGTRLYPLT SKQLLP+YDKPMIYYPLS LMLAGI++ILIIST DTPR Sbjct: 1 MKGIILAGGSGTRLYPLTKAVSKQLLPIYDKPMIYYPLSILMLAGIRDILIISTPNDTPR 60 Query: 85 FKNLLGDGSQFGISLQYIVQPNPDGLAQAFILGESFIGEDSVAMILGDNIYYGNGMTKIL 144 F LLGDGSQ GISL Y VQP+PDGLAQAFI+GE FIG+D+VA+ILGDN++YG+G+TK+L Sbjct: 61 FAELLGDGSQLGISLSYAVQPSPDGLAQAFIIGEEFIGDDNVALILGDNLFYGHGLTKLL 120 Query: 145 KEAARKKRGATVFGYHVPDPERFGVIEFDGEGKVLSVEEKPEHPKSNYAVTGLYFYDNRV 204 + A +K GATVFGY+V DPERFGV+EFD GKV+S+EEKP+HPKSNYAVTGLYFYDNRV Sbjct: 121 QNAVERKTGATVFGYYVNDPERFGVVEFDENGKVISIEEKPKHPKSNYAVTGLYFYDNRV 180 Query: 205 VSLAKEVKPSRRGELEITSINEAYLKLGELDVALLGRGFTWLDTGTHQSLVDATNFVRTI 264 V AK +KPS RGELEIT +N+ YL+LGEL V +LGRGF+WLD+GTH+SL++A+ F+ TI Sbjct: 181 VEFAKSIKPSARGELEITDVNKKYLELGELHVEILGRGFSWLDSGTHESLLEASQFIETI 240 Query: 265 EDHQGIKISAPEEIAYINGWITKEHLLECGHKLSKTGYGQYLIKVATGK 313 E Q +K++ EEIAY+ G+I +E LL+ L K YGQYLI +A K Sbjct: 241 EKRQSLKVACLEEIAYLKGYIDREQLLKLAEPLKKNQYGQYLIDIANQK 289 >gb|AAG09532.1| glucose-1-phosphate thymidylyltransferase [Salmonella enterica] Length = 292 Score = 422 bits (1084), Expect = e-117, Method: Compositional matrix adjust. Identities = 194/288 (67%), Positives = 236/288 (81%) Query: 26 KGIILAGGSGTRLYPLTMVTSKQLLPVYDKPMIYYPLSTLMLAGIKEILIISTAEDTPRF 85 KGIILAGGSGTRLYP+TM SKQLLP+YDKPMIYYPLSTLMLAGI++ILIIST +DTPRF Sbjct: 5 KGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRF 64 Query: 86 KNLLGDGSQFGISLQYIVQPNPDGLAQAFILGESFIGEDSVAMILGDNIYYGNGMTKILK 145 + LLGDGSQ+G++LQY VQPNPDGLAQAFI+GE FIG D A++LGDNI+YG+ + K++ Sbjct: 65 QQLLGDGSQWGLNLQYKVQPNPDGLAQAFIIGEEFIGNDDCALVLGDNIFYGHDLPKLMD 124 Query: 146 EAARKKRGATVFGYHVPDPERFGVIEFDGEGKVLSVEEKPEHPKSNYAVTGLYFYDNRVV 205 A K+ GATVF YHV DPER+GV+EFD G +S+EEKP PKSNYAVTGLYFYDN VV Sbjct: 125 VAINKENGATVFAYHVNDPERYGVVEFDQNGTAVSLEEKPLQPKSNYAVTGLYFYDNSVV 184 Query: 206 SLAKEVKPSRRGELEITSINEAYLKLGELDVALLGRGFTWLDTGTHQSLVDATNFVRTIE 265 +AK +KPS RGELEIT IN Y++ G L VA++GRG+ WLDTGTHQSL++A+NF+ TIE Sbjct: 185 EMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIE 244 Query: 266 DHQGIKISAPEEIAYINGWITKEHLLECGHKLSKTGYGQYLIKVATGK 313 + QG+K+S PEEIAY G+I + ++ KLSK YGQYLI + G+ Sbjct: 245 ERQGLKVSCPEEIAYRKGFIDSQKVMSLAEKLSKNAYGQYLINMIKGR 292 >ref|ZP_00045859.1| COG1209: dTDP-glucose pyrophosphorylase [Lactobacillus gasseri] Length = 294 Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/294 (69%), Positives = 239/294 (81%), Gaps = 2/294 (0%) Query: 25 MKGIILAGGSGTRLYPLTMVTSKQLLPVYDKPMIYYPLSTLMLAGIKEILIISTAEDTPR 84 MKGIILAGGSGTRLYPLT+VTSKQLLPVYDKPMIYYPLSTLMLAGIK+IL+IST DTPR Sbjct: 1 MKGIILAGGSGTRLYPLTLVTSKQLLPVYDKPMIYYPLSTLMLAGIKDILVISTPADTPR 60 Query: 85 FKNLLGDGSQFGISLQYIVQPNPDGLAQAFILGESFIGEDSVAMILGDNIYYGNGMTKIL 144 FK LLGDGSQFGI+L Y VQP PDGLAQAF LGE FI + AM+LGDNI+YGNG T +L Sbjct: 61 FKELLGDGSQFGINLSYKVQPTPDGLAQAFTLGEDFINGEPCAMVLGDNIFYGNGFTDLL 120 Query: 145 KEAAR--KKRGATVFGYHVPDPERFGVIEFDGEGKVLSVEEKPEHPKSNYAVTGLYFYDN 202 K AA +K ATVFGY+V DPERFGV++FD GK +S+EEKPEHPKSNYAVTGLYFY Sbjct: 121 KNAAEDAQKGKATVFGYYVNDPERFGVVDFDENGKAVSIEEKPEHPKSNYAVTGLYFYPA 180 Query: 203 RVVSLAKEVKPSRRGELEITSINEAYLKLGELDVALLGRGFTWLDTGTHQSLVDATNFVR 262 V A +VKPS RGE+EITS+N+ YL+ L V LLGRG+ WLDTGT QSLVDA+N+V+ Sbjct: 181 GVSEKAAQVKPSARGEVEITSLNDMYLQDDNLRVQLLGRGYAWLDTGTMQSLVDASNYVK 240 Query: 263 TIEDHQGIKISAPEEIAYINGWITKEHLLECGHKLSKTGYGQYLIKVATGKIQF 316 IE+ QG+ +SAPEEIAY++GWI K+ LLE K+ YG++L VA GK+++ Sbjct: 241 MIEERQGVSVSAPEEIAYVHGWIDKDQLLEAAKHYGKSPYGKHLKSVAEGKVRY 294 >gb|AAK27854.2| glucose 1-phosphate thymidyltransferase [Aneurinibacillus thermoaerophilus] Length = 296 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 197/286 (68%), Positives = 241/286 (84%) Query: 25 MKGIILAGGSGTRLYPLTMVTSKQLLPVYDKPMIYYPLSTLMLAGIKEILIISTAEDTPR 84 MKGIIL+GGSGTRLYPLT V SKQLLPVYDKPM+YYPLS LMLAGIK+ILIIST EDTPR Sbjct: 1 MKGIILSGGSGTRLYPLTKVVSKQLLPVYDKPMVYYPLSVLMLAGIKDILIISTPEDTPR 60 Query: 85 FKNLLGDGSQFGISLQYIVQPNPDGLAQAFILGESFIGEDSVAMILGDNIYYGNGMTKIL 144 F+ LLG GS+ GISL Y VQ +PDGLAQAFI+GE FIG+D+VA++LGDNI+YG+G T++L Sbjct: 61 FEQLLGGGSELGISLSYAVQSSPDGLAQAFIIGEEFIGDDNVALVLGDNIFYGHGFTELL 120 Query: 145 KEAARKKRGATVFGYHVPDPERFGVIEFDGEGKVLSVEEKPEHPKSNYAVTGLYFYDNRV 204 + AA +K GAT+FGY+V DP+RFGV+EFD +GKV+S+EEKPE PKS+YAVTGLYFYDNRV Sbjct: 121 QRAANRKSGATIFGYNVKDPQRFGVVEFDEKGKVISIEEKPEEPKSSYAVTGLYFYDNRV 180 Query: 205 VSLAKEVKPSRRGELEITSINEAYLKLGELDVALLGRGFTWLDTGTHQSLVDATNFVRTI 264 V +AK + PS RGELEIT +N+AYL+LGEL V LLGRGF WLDTGTH+SL+ A+ F+ TI Sbjct: 181 VDIAKNITPSARGELEITDVNKAYLELGELHVELLGRGFAWLDTGTHESLLQASQFIETI 240 Query: 265 EDHQGIKISAPEEIAYINGWITKEHLLECGHKLSKTGYGQYLIKVA 310 E Q +K++ EEIAY G+I++E L++ L K YGQYL+ +A Sbjct: 241 EKRQSLKVACLEEIAYRMGYISREQLIKLAEPLMKNEYGQYLMNLA 286 >ref|NP_815856.1| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis V583] gb|AAC35920.1| putative glucose-1-phosphate thymidyl transferase [Enterococcus faecalis] gb|AAO81926.1| glucose-1-phosphate thymidylyltransferase [Enterococcus faecalis V583] Length = 288 Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/287 (67%), Positives = 236/287 (82%) Query: 25 MKGIILAGGSGTRLYPLTMVTSKQLLPVYDKPMIYYPLSTLMLAGIKEILIISTAEDTPR 84 MKGIILAGGSGTRLYPLT TSKQL+P+YDKPMIYYP+STLMLAGI EILIIST EDTPR Sbjct: 1 MKGIILAGGSGTRLYPLTKATSKQLMPIYDKPMIYYPMSTLMLAGINEILIISTPEDTPR 60 Query: 85 FKNLLGDGSQFGISLQYIVQPNPDGLAQAFILGESFIGEDSVAMILGDNIYYGNGMTKIL 144 F++L GDG GI ++Y VQ +PDGLAQAFI+GE FIG+DSV ++LGDNIYYG G++K+L Sbjct: 61 FESLFGDGHDLGIHIEYAVQESPDGLAQAFIIGEEFIGDDSVCLVLGDNIYYGGGLSKML 120 Query: 145 KEAARKKRGATVFGYHVPDPERFGVIEFDGEGKVLSVEEKPEHPKSNYAVTGLYFYDNRV 204 + AA K+ GATVFGYHV DPERFGV+EFD E + LS+EEKP PKSNYAVTGLYFYDN V Sbjct: 121 QRAASKESGATVFGYHVNDPERFGVVEFDEEMRALSIEEKPAQPKSNYAVTGLYFYDNEV 180 Query: 205 VSLAKEVKPSRRGELEITSINEAYLKLGELDVALLGRGFTWLDTGTHQSLVDATNFVRTI 264 V +AK +KPS RGELEIT +N+ YL+ +L V ++GRGF WLDTGTH+SL++A+ F+ TI Sbjct: 181 VEIAKGIKPSERGELEITDVNKVYLEKNKLSVEVMGRGFAWLDTGTHESLLEASTFIETI 240 Query: 265 EDHQGIKISAPEEIAYINGWITKEHLLECGHKLSKTGYGQYLIKVAT 311 E Q +K++ EEIAY G+ITKE L+E L K GYGQYL+++A Sbjct: 241 EKRQNLKVACLEEIAYRMGYITKEQLVELAQPLKKNGYGQYLLRLAA 287 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 481,848,660 Number of extensions: 20675806 Number of successful extensions: 49621 Number of sequences better than 1.0e-05: 1333 Number of HSP's gapped: 48874 Number of HSP's successfully gapped: 1333 Length of query: 316 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 191 Effective length of database: 417,850,203 Effective search space: 79809388773 Effective search space used: 79809388773 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)