BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0023.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAD67948.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [T... 243 2e-63 gb|AAQ23680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus... 239 2e-62 gb|AAQ23686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus... 238 4e-62 gb|AAR99611.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus... 218 6e-56 gb|EAF97901.1| unknown [environmental sequence] 218 6e-56 >emb|CAD67948.1| putative dTDP-6-deoxy-D-glucose-3,5-epimerase [Thermotoga sp. RQ2] Length = 188 Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 112/184 (60%), Positives = 137/184 (74%), Gaps = 1/184 (0%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 MK +T L VL++EP +F D RGWFME+YS F+E + FVQDN SYS KGTLRG Sbjct: 1 MKVIETELPEVLIIEPRVFEDERGWFMESYSYRVFKELGIDVVFVQDNHSYSKKKGTLRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 +HFQ +P AQ+KL RCTRG I DVAVD+R+GSP+Y KW +EL+ ENK+ L IP+GF H Sbjct: 61 IHFQNDPMAQSKLVRCTRGRILDVAVDLRKGSPTYKKWIMLELSEENKRMLFIPRGFGHA 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVSL 183 F+TLT++VEVQYK D+ Y+ E D SI WNDPDIGI+WPI P+LS KD NAP LKD Sbjct: 121 FLTLTDDVEVQYKVDQYYSKEHDRSIRWNDPDIGIDWPIK-DPILSEKDRNAPFLKDSDC 179 Query: 184 NFVY 187 NF+Y Sbjct: 180 NFIY 183 >gb|AAQ23680.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus stearothermophilus] Length = 187 Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 111/182 (60%), Positives = 136/182 (74%), Gaps = 1/182 (0%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 MK +T GV ++EP +FGDHRG+FME+Y++ F E L + F+QDN S S GT+RG Sbjct: 1 MKVRETLFPGVWLIEPKVFGDHRGFFMESYNKKLFAEYGLDFDFIQDNHSLSRQAGTIRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 LH+QLNPKAQTKL R TRG+IYDV VDIR+GSP++GKW G L+A+NK+QLL+PKGFAHG Sbjct: 61 LHYQLNPKAQTKLVRVTRGAIYDVVVDIRKGSPTFGKWQGFILSADNKRQLLVPKGFAHG 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVSL 183 F TL E EVQYK DE Y+PE D ILWNDP +GI+WP P+LS KD PLL D + Sbjct: 121 FCTLVENTEVQYKVDEYYSPEHDRGILWNDPALGIDWPT-ANPILSDKDTKHPLLADAEI 179 Query: 184 NF 185 NF Sbjct: 180 NF 181 >gb|AAQ23686.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus stearothermophilus] Length = 190 Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 108/187 (57%), Positives = 139/187 (74%), Gaps = 1/187 (0%) Query: 1 VNKMKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGT 60 +N M+ +T L+G ++ EP ++ D RG+FME+Y+E F++ +FVQDN S S GT Sbjct: 1 MNDMRIIQTELDGAVIFEPIVYKDERGFFMESYNEQIFRKLGFDVRFVQDNHSLSVKAGT 60 Query: 61 LRGLHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGF 120 +RGLH+QLNPKAQTKL R TRG+IYDV VDIR+GSP++GKW G L+ +NK+QLL+PKGF Sbjct: 61 IRGLHYQLNPKAQTKLVRVTRGAIYDVIVDIRKGSPTFGKWKGFILSEDNKRQLLVPKGF 120 Query: 121 AHGFMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKD 180 AHGF TL E EVQYK DE Y+PE D ILWNDP + I+WP+ P+LS KD N PLL D Sbjct: 121 AHGFCTLVENTEVQYKVDEYYSPEHDRGILWNDPALSIDWPV-TNPILSEKDANHPLLAD 179 Query: 181 VSLNFVY 187 +NFV+ Sbjct: 180 AEINFVW 186 >gb|AAR99611.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Geobacillus stearothermophilus] Length = 183 Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 1/184 (0%) Query: 4 MKFTKTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRG 63 MK +T ++EP +FGDHRG+FME+Y++ F+E Y+FVQDN S S GTLRG Sbjct: 1 MKIIETKFSNAFLLEPKVFGDHRGFFMESYNDKVFKELGFNYEFVQDNHSLSVEVGTLRG 60 Query: 64 LHFQLNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHG 123 LH+QL P AQTKL R RG+IYDV VDIR+GSP+YG+W G LT NK+QLL+PKGFAHG Sbjct: 61 LHYQLEPYAQTKLVRVVRGAIYDVIVDIRKGSPTYGEWQGFILTEWNKRQLLVPKGFAHG 120 Query: 124 FMTLTEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDVTPVLSAKDENAPLLKDVSL 183 F T+ EV YK D Y+PE D I WNDPD+ I+WP +P+LS KD P L + Sbjct: 121 FCTIVPNTEVIYKVDNYYSPEHDRGICWNDPDLKIDWPTH-SPILSEKDSKHPRLAEAEN 179 Query: 184 NFVY 187 NF Y Sbjct: 180 NFTY 183 >gb|EAF97901.1| unknown [environmental sequence] Length = 185 Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 99/180 (55%), Positives = 128/180 (71%), Gaps = 1/180 (0%) Query: 8 KTNLEGVLVVEPALFGDHRGWFMETYSEAKFQEQNLAYQFVQDNQSYSAVKGTLRGLHFQ 67 +T L GVL++ P FGD RG+F E+Y+ A+ E + +FVQDN S SA GT+RGLHFQ Sbjct: 6 ETALPGVLLITPRRFGDARGFFSESYNRARMAEHGVTIEFVQDNHSLSAQAGTVRGLHFQ 65 Query: 68 LNPKAQTKLARCTRGSIYDVAVDIRQGSPSYGKWFGIELTAENKKQLLIPKGFAHGFMTL 127 P AQ KL RC RG+++DVAVDIR+GSP+YG+W G EL+ EN +QLL+PKGF HGF+T Sbjct: 66 APPHAQDKLVRCGRGALFDVAVDIRKGSPTYGQWVGYELSFENGRQLLVPKGFLHGFVTR 125 Query: 128 TEEVEVQYKCDELYAPECDGSILWNDPDIGIEWPIDV-TPVLSAKDENAPLLKDVSLNFV 186 + E+ YKC + YAPECDG++ ++ PDIGI+W D + VLS KD AP LKD F Sbjct: 126 VPDTEIMYKCSDYYAPECDGAVRFDSPDIGIDWGFDTDSAVLSEKDAEAPFLKDFDSPFT 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 279,283,034 Number of extensions: 11004265 Number of successful extensions: 22069 Number of sequences better than 1.0e-05: 483 Number of HSP's gapped: 21551 Number of HSP's successfully gapped: 483 Length of query: 187 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 69 Effective length of database: 436,855,896 Effective search space: 30143056824 Effective search space used: 30143056824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)