BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0017.p
         (66 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_979097.1| hypothetical protein BCE2793 [Bacillus cereus A...    79   5e-14
ref|NP_656645.1| hypothetical protein predicted by GeneMark [Bac...    76   2e-13
ref|NP_832517.1| hypothetical protein [Bacillus cereus ATCC 1457...    73   2e-12

>ref|NP_979097.1| hypothetical protein BCE2793 [Bacillus cereus ATCC 10987]
 gb|AAS41705.1| hypothetical protein BCE2793 [Bacillus cereus ATCC 10987]
          Length = 85

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 48/65 (73%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE  DGTE EE+GI+ P+ F SLY+R+W R+T  I D++EGFK+ +K R  +K I
Sbjct: 13 FVRTETENKDGTEFEERGIIKPIYFESLYVRMWFRKTCLIFDTKEGFKKVKKRRIDYKFI 72

Query: 61 IGISS 65
          +GI S
Sbjct: 73 VGIVS 77


>ref|NP_656645.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_845109.1| hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP26595.1| hypothetical protein BA2760 [Bacillus anthracis str. Ames]
          Length = 85

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 47/65 (72%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE  DGTE EE+GI+ P+   SLY+R+W R+T  I+D++EGFK+ +K R  +K I
Sbjct: 13 FVRTETENKDGTEFEERGIIKPIYLESLYVRMWFRKTCLILDTKEGFKKVKKRRIEYKFI 72

Query: 61 IGISS 65
           GI S
Sbjct: 73 FGIVS 77


>ref|NP_832517.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP09718.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 85

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 48/65 (73%)

Query: 1  MLRTETEWSDGTETEEKGIVPPLKFHSLYIRVWIRQTVWIMDSREGFKRSRKTRTAFKII 60
           +RTETE  DGTE EE+GI+ P+ F SLY+R+W R+T  I D++EGFK+ +K R  +K I
Sbjct: 13 FVRTETENKDGTEFEERGIIKPIYFESLYVRMWFRKTCLIFDTKEGFKKIKKKRIEYKFI 72

Query: 61 IGISS 65
          +GI S
Sbjct: 73 VGIVS 77


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.135    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 100,846,278
Number of extensions: 2831575
Number of successful extensions: 4052
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4052
Number of HSP's successfully gapped: 3
Length of query: 66
Length of database: 757,237,578
Length adjustment: 37
Effective length of query: 29
Effective length of database: 656,778,915
Effective search space: 19046588535
Effective search space used: 19046588535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)