BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0016.p (957 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391396.1| excinuclease ABC (subunit A) [Bacillus subtilis... 1409 0.0 gb|AAK29748.1| DNA repair protein UvrA [Bacillus caldotenax] 1404 0.0 ref|NP_834831.1| Excinuclease ABC subunit A [Bacillus cereus ATC... 1396 0.0 ref|NP_653613.1| ABC_tran, ABC transporter [Bacillus anthracis A... 1395 0.0 ref|NP_981564.1| excinuclease ABC, A subunit [Bacillus cereus AT... 1393 0.0 >ref|NP_391396.1| excinuclease ABC (subunit A) [Bacillus subtilis] sp|O34863|UVRA_BACSU UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) pir||F69729 excinuclease ABC chain A - Bacillus subtilis gb|AAC67271.1| excinuclease ABC subunit A [Bacillus subtilis] emb|CAB15533.1| excinuclease ABC (subunit A) [Bacillus subtilis subsp. subtilis str. 168] Length = 957 Score = 1409 bits (3647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/949 (71%), Positives = 794/949 (83%), Gaps = 1/949 (0%) Query: 1 LANENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLS 60 +A + I +KGARAHNLKNIDVTIPRD+ VV AFDTIYAEGQRRYVESLS Sbjct: 1 MAMDRIEVKGARAHNLKNIDVTIPRDQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLS 60 Query: 61 AYARQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHP 120 AYARQFLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLL+AR+G P Sbjct: 61 AYARQFLGQMDKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLYARVGKP 120 Query: 121 HCPDHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVR 180 HCP+HGIEITSQT+EQMVDRI++YPE+T+LQ+LAP++SGRKG H + I KQG+VRVR Sbjct: 121 HCPEHGIEITSQTIEQMVDRILEYPERTKLQVLAPIVSGRKGAHVKVLEQIRKQGYVRVR 180 Query: 181 VDGELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIG 240 +DGE+ E+++DI LEKNKKH+ RL+DSLETAL+L G++++D+IG Sbjct: 181 IDGEMAELSDDIELEKNKKHSIEVVIDRIVVKEGVAARLSDSLETALRLGEGRVMIDVIG 240 Query: 241 QEELLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKS 300 +EEL+FS ACP CGFSI EL PR+FSFNSPFGACP CDGLGMK+ VD DL+IP+Q+ S Sbjct: 241 EEELMFSEHHACPHCGFSIGELEPRLFSFNSPFGACPTCDGLGMKLEVDADLVIPNQDLS 300 Query: 301 IEEGAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRY 360 ++E A WT +S YYPQ L++VC H+GI +VPV L ++K+L G+G + I FRY Sbjct: 301 LKENAVAPWTPISSQYYPQLLEAVCTHYGIDMDVPVKDLPKHQLDKVLYGSGDDLIYFRY 360 Query: 361 ENDFGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILA 420 ENDFGQ ++ + FEG++ N+ERRY+ET SD IRE +E +MS K C CKG RLKKE LA Sbjct: 361 ENDFGQIREGEIQFEGVLRNIERRYKETGSDFIREQMEQYMSQKSCPTCKGYRLKKEALA 420 Query: 421 VTVNDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTL 480 V ++ R+I +T+LS+ D L FF ++ LSEK+ IA+LIL+EI RL FL VGL+YLTL Sbjct: 421 VLIDGRHIGKITELSVADALAFFKDLTLSEKDMQIANLILREIVERLSFLDKVGLDYLTL 480 Query: 481 SRAAGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNT 540 SRAAG+LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLIS L +MRDLGNT Sbjct: 481 SRAAGTLSGGEAQRIRLATQIGSRLSGVLYILDEPSIGLHQRDNDRLISALKNMRDLGNT 540 Query: 541 LIVVEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPV 600 LIVVEHDEDTMMAADY+IDIGPGAGIHGGQV++ GTP+E+M DPNSLTG YLSG+KFIP+ Sbjct: 541 LIVVEHDEDTMMAADYLIDIGPGAGIHGGQVISAGTPEEVMEDPNSLTGSYLSGKKFIPL 600 Query: 601 TSKRRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQ 660 +RR D R+IEI+GA ENNLK VN K PLG FTAVTGVSGSGKS+LVNEIL+K+LA++ Sbjct: 601 PPERRKPDGRYIEIKGASENNLKKVNAKFPLGTFTAVTGVSGSGKSTLVNEILHKALAQK 660 Query: 661 LNKAVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEA 720 L+KA K +PG HKEI+GL++LDKVIDIDQ+PIGRTPRSNPATYTGVFDDIRD+F++TNEA Sbjct: 661 LHKA-KAKPGSHKEIKGLDHLDKVIDIDQAPIGRTPRSNPATYTGVFDDIRDVFAQTNEA 719 Query: 721 KVRGFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 KVRG++KGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEV YK Sbjct: 720 KVRGYKKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 779 Query: 781 GKSISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLA 840 GKSISDVL+MTVEDA FF+NIPKI RK+QTL DVGLGYI +GQP TTLSGGEAQRVKLA Sbjct: 780 GKSISDVLDMTVEDALSFFENIPKIKRKLQTLYDVGLGYITLGQPATTLSGGEAQRVKLA 839 Query: 841 SELYRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYL 900 SEL++RSTG+TLYILDEPTTGLHVDDI RLL VL RLVD+G++VLVIEHNLD+IKTADY+ Sbjct: 840 SELHKRSTGRTLYILDEPTTGLHVDDIARLLVVLQRLVDNGDTVLVIEHNLDIIKTADYI 899 Query: 901 IDMGPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKAL 949 +D+GPE PE+I EVEESYTG+YLKPV+ RD R K+L Sbjct: 900 VDLGPEGGAGGGTIVASGTPEEITEVEESYTGRYLKPVIERDKTRMKSL 948 >gb|AAK29748.1| DNA repair protein UvrA [Bacillus caldotenax] Length = 952 Score = 1404 bits (3635), Expect = 0.0, Method: Compositional matrix adjust. Identities = 668/945 (70%), Positives = 791/945 (83%), Gaps = 1/945 (0%) Query: 4 ENIVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYA 63 + IV+KGARAHNLKNIDV IPR + VV AFDTIYAEGQRRYVESLSAYA Sbjct: 2 DKIVVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 61 Query: 64 RQFLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCP 123 RQFLGQMEKPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIG P CP Sbjct: 62 RQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRPVCP 121 Query: 124 DHGIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDG 183 HGIEI SQT+EQMVDR++ YPE+T++QILAP++SG+KG H DI KQG+VRVR+DG Sbjct: 122 THGIEIQSQTIEQMVDRLLAYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDG 181 Query: 184 ELREVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEE 243 E+RE+TEDI LEKNKKH+ RL DSLETALKL+ G+++VD+IG+ E Sbjct: 182 EMRELTEDIELEKNKKHSIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGE 241 Query: 244 LLFSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEE 303 LLFS ACP CGFSI EL PR+FSFNSPFGACP+CDGLG K+ VD DL+IP+ E +++E Sbjct: 242 LLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKE 301 Query: 304 GAFLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYEND 363 A W +S YYPQ L++VC H+GIP +VPV L E ++K+L G+G E I FRY ND Sbjct: 302 HAIAPWEPQSSQYYPQLLEAVCRHYGIPMDVPVRDLPKEQLDKILYGSGGEPIYFRYTND 361 Query: 364 FGQRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTV 423 FGQ ++ +AFEG+IPN+ERRYRET+SD IRE +E +M+ +PC C+G RLKKE LAV V Sbjct: 362 FGQVREQYIAFEGVIPNVERRYRETSSDYIREQMEKYMAEQPCPTCQGYRLKKESLAVLV 421 Query: 424 NDRNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRA 483 ++I +VT +S+ + L FFD + L+EKE IA LIL+EI RLGFL NVGL+YLTLSR+ Sbjct: 422 GGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRS 481 Query: 484 AGSLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIV 543 AG+LSGGEAQRIRLATQIGS L GVLY+LDEPSIGLHQRDNDRLI+TL MRDLGNTLIV Sbjct: 482 AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 541 Query: 544 VEHDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSK 603 VEHDEDTM+AADY+IDIGPGAGIHGG+V++ GTP+E+M DPNSLTG YLSG+KFIP+ + Sbjct: 542 VEHDEDTMLAADYLIDIGPGAGIHGGEVISAGTPEEVMEDPNSLTGSYLSGKKFIPLPPE 601 Query: 604 RRATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNK 663 RR D R+IEI+GA+E+NLKNV+VKIPLG F AVTGVSGSGKS+LVNE+LYK+LA++L++ Sbjct: 602 RRKPDGRYIEIKGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHR 661 Query: 664 AVKVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVR 723 A K +PG+H++IRGLE+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD+F+ TNEAKVR Sbjct: 662 A-KAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVR 720 Query: 724 GFQKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKS 783 G++KGRFSFNVKGGRCEAC GDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEV YKGK+ Sbjct: 721 GYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKN 780 Query: 784 ISDVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASEL 843 I++VL+MTVEDA +FF +IPKI RK++TL DVGLGY+ +GQP TTLSGGEAQRVKLA+EL Sbjct: 781 IAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 840 Query: 844 YRRSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDM 903 +RRS G+TLYILDEPTTGLHVDDI RLL+VLHRLVD+G++VLVIEHNLDVIKTADY+ID+ Sbjct: 841 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDL 900 Query: 904 GPEXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTKA 948 GPE PE++ EVEES+TG+YL P+L RD R +A Sbjct: 901 GPEGGDRGGQIVAVGTPEEVAEVEESHTGRYLNPILERDRARMQA 945 >ref|NP_834831.1| Excinuclease ABC subunit A [Bacillus cereus ATCC 14579] gb|AAP12032.1| Excinuclease ABC subunit A [Bacillus cereus ATCC 14579] Length = 958 Score = 1396 bits (3613), Expect = 0.0, Method: Compositional matrix adjust. Identities = 668/942 (70%), Positives = 782/942 (83%), Gaps = 1/942 (0%) Query: 6 IVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYARQ 65 IV+KGARAHNLKNIDVTIPR++ VV AFDTIYAEGQRRYVESLSAYARQ Sbjct: 8 IVVKGARAHNLKNIDVTIPRNQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67 Query: 66 FLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCPDH 125 FLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIG P CP+H Sbjct: 68 FLGQMDKPDVDTIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGTPICPNH 127 Query: 126 GIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDGEL 185 GIEITSQTVEQMVDR+++YPE+T+LQ+LAP++SGRKG H + DI KQG+VRVRVDGE+ Sbjct: 128 GIEITSQTVEQMVDRVLEYPERTKLQVLAPIVSGRKGAHVKVLEDIKKQGYVRVRVDGEM 187 Query: 186 REVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEELL 245 +V+EDI L+KNKKH+ +RL DSLE+ALKL GG++L+D++G+EELL Sbjct: 188 LDVSEDIALDKNKKHSIEVVIDRIVVKEGIASRLADSLESALKLGGGRVLIDVMGEEELL 247 Query: 246 FSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEEGA 305 FS ACP CGFSI EL PRMFSFNSPFGACP CDGLG K+ VD +L+IP+ + S+ E A Sbjct: 248 FSEHHACPHCGFSIGELEPRMFSFNSPFGACPSCDGLGSKLEVDLELVIPNWDLSLNEHA 307 Query: 306 FLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYENDFG 365 W ++S YYPQ L+SVC H+G+ +VPV ++ + +K+L G+G EK+ FRY N+FG Sbjct: 308 IAPWEPTSSQYYPQLLQSVCNHYGVDMDVPVKNIPKDLFDKVLYGSGEEKVYFRYVNEFG 367 Query: 366 QRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTVND 425 Q K+ + FEG+IPN+ERRYRET+SD IRE +E +M+ + C CKG RLK E LAV V + Sbjct: 368 QVKENEILFEGVIPNIERRYRETSSDYIREQMEKYMAEQACPKCKGGRLKPESLAVFVGN 427 Query: 426 RNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRAAG 485 + IADVT S+ + +FF N+ L+EK+ IAHLIL+EI R+GFLVNVGL+YLTLSRAAG Sbjct: 428 KTIADVTKYSVQEVQEFFSNVELTEKQQKIAHLILREIQERVGFLVNVGLDYLTLSRAAG 487 Query: 486 SLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIVVE 545 +LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLI TL MRDLGNTLIVVE Sbjct: 488 TLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLIRTLQEMRDLGNTLIVVE 547 Query: 546 HDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSKRR 605 HDEDTMMAADY++DIGPGAGIHGGQV++ GTP E+M D NSLTG+YLSG++FIPV +RR Sbjct: 548 HDEDTMMAADYLLDIGPGAGIHGGQVVSAGTPAEVMQDENSLTGKYLSGKEFIPVPLERR 607 Query: 606 ATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNKAV 665 D R +EI GAKENNLKN + PLG F AVTGVSGSGKS+++NE+LYKSLA++L KA Sbjct: 608 KGDGRKVEIVGAKENNLKNAKMSFPLGTFVAVTGVSGSGKSTMINEVLYKSLAQKLYKA- 666 Query: 666 KVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVRGF 725 K +PG HKEI+GLE+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD+F++TNEAKVRG+ Sbjct: 667 KAKPGTHKEIKGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKVRGY 726 Query: 726 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKSIS 785 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEVKYK K+IS Sbjct: 727 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKDKNIS 786 Query: 786 DVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASELYR 845 +VL MT+ED EFF NIPKI RK+QTL+DVGLGY+ +GQP TTLSGGEAQRVKLASEL+R Sbjct: 787 EVLGMTIEDGVEFFANIPKIKRKLQTLVDVGLGYMKLGQPATTLSGGEAQRVKLASELHR 846 Query: 846 RSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDMGP 905 RSTG+TLYILDEPTTGLH DI RLLEVL RLV+SGE+VLVIEHNLDVIKTADY++D+GP Sbjct: 847 RSTGRTLYILDEPTTGLHAHDIARLLEVLQRLVESGETVLVIEHNLDVIKTADYIVDLGP 906 Query: 906 EXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTK 947 E PE++++ E SYTGKYLK +L RD R K Sbjct: 907 EGGDKGGQIVASGTPEQVVKEERSYTGKYLKEILNRDKARMK 948 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 6/112 (5%) Query: 611 WIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNKAVKVRPG 670 +I ++GA+ +NLKN++V IP VTG+SGSGKSSL + +Y R+ +++ Sbjct: 7 FIVVKGARAHNLKNIDVTIPRNQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 66 Query: 671 Q------HKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSK 716 Q ++ +E L I IDQ R PRS T T ++D +R LF++ Sbjct: 67 QFLGQMDKPDVDTIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFAR 118 >ref|NP_653613.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_847568.1| excinuclease ABC, A subunit [Bacillus anthracis str. Ames] gb|AAP29054.1| excinuclease ABC, A subunit [Bacillus anthracis str. Ames] Length = 958 Score = 1395 bits (3610), Expect = 0.0, Method: Compositional matrix adjust. Identities = 668/942 (70%), Positives = 780/942 (82%), Gaps = 1/942 (0%) Query: 6 IVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYARQ 65 IV+KGARAHNLKNIDVTIPR++ VV AFDTIYAEGQRRYVESLSAYARQ Sbjct: 8 IVVKGARAHNLKNIDVTIPRNQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67 Query: 66 FLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCPDH 125 FLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIG P CP+H Sbjct: 68 FLGQMDKPDVDTIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGTPICPNH 127 Query: 126 GIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDGEL 185 GIEITSQTVEQMVDR+++YPE+T+LQ+LAP++SGRKG H + DI KQG+VRVRVDGE+ Sbjct: 128 GIEITSQTVEQMVDRVLEYPERTKLQVLAPIVSGRKGAHVKVLEDIKKQGYVRVRVDGEM 187 Query: 186 REVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEELL 245 +V+EDI L+KNKKH+ +RL DSLE+ALKL GG++L+D++G+EELL Sbjct: 188 LDVSEDIALDKNKKHSIEVVIDRIVVKEGIASRLADSLESALKLGGGRVLIDVMGEEELL 247 Query: 246 FSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEEGA 305 FS ACP CGFSI EL PRMFSFNSPFGACP CDGLG K+ VD +L+IP+ + S+ E A Sbjct: 248 FSEHHACPHCGFSIGELEPRMFSFNSPFGACPSCDGLGSKLEVDLELVIPNWDLSLNEHA 307 Query: 306 FLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYENDFG 365 W ++S YYPQ L+SVC H+G+ +VPV + + +K+L G+G EK+ FRY N+FG Sbjct: 308 IAPWEPTSSQYYPQLLQSVCNHYGVDMDVPVKDIPKDLFDKVLYGSGEEKVYFRYVNEFG 367 Query: 366 QRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTVND 425 Q K+ + FEG+IPN+ERRYRET+SD IRE +E +M+ + C CKG RLK E LAV V Sbjct: 368 QVKENEILFEGVIPNIERRYRETSSDYIREQMEKYMAEQACPKCKGGRLKPESLAVFVGG 427 Query: 426 RNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRAAG 485 + IADVT S+ + +FF N+ L+EK+ IAHLIL+EI R+GFLVNVGL+YLTLSRAAG Sbjct: 428 KTIADVTKYSVQEVQEFFSNVELTEKQQKIAHLILREIQERVGFLVNVGLDYLTLSRAAG 487 Query: 486 SLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIVVE 545 +LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLI TL MRDLGNTLIVVE Sbjct: 488 TLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLIRTLQEMRDLGNTLIVVE 547 Query: 546 HDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSKRR 605 HDEDTMMAADY++DIGPGAGIHGGQV++ GTP E+M D NSLTG+YLSG++FIPV +RR Sbjct: 548 HDEDTMMAADYLLDIGPGAGIHGGQVVSAGTPAEVMQDENSLTGKYLSGKEFIPVPLERR 607 Query: 606 ATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNKAV 665 D R +EI GAKENNLKN + PLG F AVTGVSGSGKS+++NE+LYKSLA++L KA Sbjct: 608 KGDGRKVEIVGAKENNLKNAKMSFPLGTFVAVTGVSGSGKSTMINEVLYKSLAQKLYKA- 666 Query: 666 KVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVRGF 725 K +PG HKEI+GLE+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD+F++TNEAKVRG+ Sbjct: 667 KAKPGTHKEIKGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKVRGY 726 Query: 726 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKSIS 785 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEVKYK K+IS Sbjct: 727 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKDKNIS 786 Query: 786 DVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASELYR 845 +VL MT+ED EFF NIPKI RK+QTL+DVGLGY+ +GQP TTLSGGEAQRVKLASEL+R Sbjct: 787 EVLGMTIEDGVEFFANIPKIKRKLQTLVDVGLGYMKLGQPATTLSGGEAQRVKLASELHR 846 Query: 846 RSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDMGP 905 RSTG+TLYILDEPTTGLH DI RLLEVL RLV+SGE+VLVIEHNLDVIKTADY++D+GP Sbjct: 847 RSTGRTLYILDEPTTGLHAHDIARLLEVLQRLVESGETVLVIEHNLDVIKTADYIVDLGP 906 Query: 906 EXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTK 947 E PE++++ E SYTGKYLK +L RD R K Sbjct: 907 EGGDKGGQIVASGTPEQVVKEERSYTGKYLKEILNRDKARMK 948 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 6/112 (5%) Query: 611 WIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNKAVKVRPG 670 +I ++GA+ +NLKN++V IP VTG+SGSGKSSL + +Y R+ +++ Sbjct: 7 FIVVKGARAHNLKNIDVTIPRNQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 66 Query: 671 Q------HKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSK 716 Q ++ +E L I IDQ R PRS T T ++D +R LF++ Sbjct: 67 QFLGQMDKPDVDTIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFAR 118 >ref|NP_981564.1| excinuclease ABC, A subunit [Bacillus cereus ATCC 10987] gb|AAS44172.1| excinuclease ABC, A subunit [Bacillus cereus ATCC 10987] Length = 958 Score = 1393 bits (3605), Expect = 0.0, Method: Compositional matrix adjust. Identities = 667/942 (70%), Positives = 780/942 (82%), Gaps = 1/942 (0%) Query: 6 IVIKGARAHNLKNIDVTIPRDRFVVXXXXXXXXXXXXAFDTIYAEGQRRYVESLSAYARQ 65 IV+KGARAHNLKNIDVTIPR++ VV AFDTIYAEGQRRYVESLSAYARQ Sbjct: 8 IVVKGARAHNLKNIDVTIPRNQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67 Query: 66 FLGQMEKPDVDSIDGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGHPHCPDH 125 FLGQM+KPDVD+I+GLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIG P CP+H Sbjct: 68 FLGQMDKPDVDTIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGTPICPNH 127 Query: 126 GIEITSQTVEQMVDRIMQYPEKTRLQILAPVISGRKGEHKGLFSDISKQGFVRVRVDGEL 185 GIEITSQTVEQMVDR+++YPE+T+LQ+LAP++SGRKG H + DI KQG+VRVRVDGE+ Sbjct: 128 GIEITSQTVEQMVDRVLEYPERTKLQVLAPIVSGRKGAHVKVLEDIKKQGYVRVRVDGEM 187 Query: 186 REVTEDIVLEKNKKHTXXXXXXXXXXXXXXQTRLTDSLETALKLSGGQILVDIIGQEELL 245 +V+EDI L+KNKKH+ +RL DSLE+ALKL GG++L+D++G+EELL Sbjct: 188 LDVSEDIALDKNKKHSIEVVIDRIVVKEGIASRLADSLESALKLGGGRVLIDVMGEEELL 247 Query: 246 FSSSFACPVCGFSIEELAPRMFSFNSPFGACPECDGLGMKMVVDPDLLIPDQEKSIEEGA 305 FS ACP CGFSI EL PRMFSFNSPFGACP CDGLG K+ VD +L+IP+ + S+ E A Sbjct: 248 FSEHHACPHCGFSIGELEPRMFSFNSPFGACPSCDGLGSKLEVDLELVIPNWDLSLNEHA 307 Query: 306 FLAWTGSTSNYYPQFLKSVCEHFGIPQNVPVSSLSPEHMNKLLNGTGSEKIRFRYENDFG 365 W ++S YYPQ L+SVC H+G+ +VPV + + +K+L G+G EK+ FRY N+FG Sbjct: 308 IAPWEPTSSQYYPQLLQSVCNHYGVDMDVPVKDIPKDLFDKVLYGSGEEKVYFRYVNEFG 367 Query: 366 QRKDALVAFEGIIPNLERRYRETASDGIREFIEGFMSAKPCHVCKGKRLKKEILAVTVND 425 Q K+ + FEG+IPN+ERRYRET+SD IRE +E +M+ + C CKG RLK E LAV V Sbjct: 368 QVKENEILFEGVIPNIERRYRETSSDYIREQMEKYMAEQACPKCKGGRLKPESLAVFVGG 427 Query: 426 RNIADVTDLSIGDCLQFFDNIALSEKETAIAHLILKEISSRLGFLVNVGLNYLTLSRAAG 485 + IADVT S+ + +FF ++ L+EK+ IAHLIL+EI R+GFLVNVGL+YLTLSRAAG Sbjct: 428 KTIADVTKYSVQEVQEFFSSVELTEKQQKIAHLILREIQERVGFLVNVGLDYLTLSRAAG 487 Query: 486 SLSGGEAQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLGHMRDLGNTLIVVE 545 +LSGGEAQRIRLATQIGS L GVLYILDEPSIGLHQRDNDRLI TL MRDLGNTLIVVE Sbjct: 488 TLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNDRLIRTLQEMRDLGNTLIVVE 547 Query: 546 HDEDTMMAADYIIDIGPGAGIHGGQVMAQGTPKEIMNDPNSLTGEYLSGRKFIPVTSKRR 605 HDEDTMMAADY++DIGPGAGIHGGQV++ GTP E+M D NSLTG+YLSG++FIPV +RR Sbjct: 548 HDEDTMMAADYLLDIGPGAGIHGGQVVSAGTPAEVMQDENSLTGKYLSGKEFIPVPLERR 607 Query: 606 ATDDRWIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNKAV 665 D R +EI GAKENNLKN + PLG F AVTGVSGSGKS+++NE+LYKSLA++L KA Sbjct: 608 KGDGRKVEIVGAKENNLKNAKMSFPLGTFVAVTGVSGSGKSTMINEVLYKSLAQKLYKA- 666 Query: 666 KVRPGQHKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSKTNEAKVRGF 725 K +PG HKEI+GLE+LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRD+F++TNEAKVRG+ Sbjct: 667 KAKPGTHKEIKGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKVRGY 726 Query: 726 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKSIS 785 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVC GKRYNRETLEVKYK K+IS Sbjct: 727 QKGRFSFNVKGGRCEACRGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKDKNIS 786 Query: 786 DVLEMTVEDATEFFKNIPKIHRKMQTLLDVGLGYINIGQPGTTLSGGEAQRVKLASELYR 845 +VL MT+ED EFF NIPKI RK+QTL+DVGLGY+ +GQP TTLSGGEAQRVKLASEL+R Sbjct: 787 EVLGMTIEDGVEFFANIPKIKRKLQTLVDVGLGYMKLGQPATTLSGGEAQRVKLASELHR 846 Query: 846 RSTGKTLYILDEPTTGLHVDDIGRLLEVLHRLVDSGESVLVIEHNLDVIKTADYLIDMGP 905 RSTG+TLYILDEPTTGLH DI RLLEVL RLV+SGE+VLVIEHNLDVIKTADY++D+GP Sbjct: 847 RSTGRTLYILDEPTTGLHAHDIARLLEVLQRLVESGETVLVIEHNLDVIKTADYIVDLGP 906 Query: 906 EXXXXXXXXXXXXXPEKIIEVEESYTGKYLKPVLIRDTERTK 947 E PE++++ E SYTGKYLK +L RD R K Sbjct: 907 EGGDKGGQIVASGTPEQVVKEERSYTGKYLKEILNRDKARMK 948 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 6/112 (5%) Query: 611 WIEIRGAKENNLKNVNVKIPLGVFTAVTGVSGSGKSSLVNEILYKSLARQLNKAVKVRPG 670 +I ++GA+ +NLKN++V IP VTG+SGSGKSSL + +Y R+ +++ Sbjct: 7 FIVVKGARAHNLKNIDVTIPRNQLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 66 Query: 671 Q------HKEIRGLENLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDLFSK 716 Q ++ +E L I IDQ R PRS T T ++D +R LF++ Sbjct: 67 QFLGQMDKPDVDTIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFAR 118 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,345,343,230 Number of extensions: 57255049 Number of successful extensions: 214316 Number of sequences better than 1.0e-05: 1774 Number of HSP's gapped: 212413 Number of HSP's successfully gapped: 3221 Length of query: 957 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 822 Effective length of database: 390,699,213 Effective search space: 321154753086 Effective search space used: 321154753086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)