BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0012.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183020.1| hypothetical protein Exigu165101 [Exiguobacte... 131 4e-30 ref|NP_465948.1| similar to glycine cleavage system protein H [L... 131 5e-30 ref|NP_960473.1| GcvH [Mycobacterium avium subsp. paratuberculos... 130 8e-30 ref|NP_457452.1| glycine cleavage system H protein [Salmonella e... 129 2e-29 ref|NP_461970.1| glycine cleavage complex protein H [Salmonella ... 129 2e-29 >ref|ZP_00183020.1| hypothetical protein Exigu165101 [Exiguobacterium sp. 255-15] Length = 100 Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 65/101 (64%), Positives = 76/101 (75%), Gaps = 1/101 (0%) Query: 1 MSEVLDNLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGS 60 MS+V DNL YSEEHEW + G RIGITD AQH LGDIVFVE PEVG ISA + GS Sbjct: 1 MSQVKDNLRYSEEHEWVEVT-GNKARIGITDFAQHELGDIVFVELPEVGDTISANEPFGS 59 Query: 61 IESVKTVSELYSPVSGTVTKINDTLEASPELINDQPYSGGW 101 +ESVKTVSELY+P+SG V IN++L SPEL+N+ P+ G W Sbjct: 60 VESVKTVSELYAPISGKVVAINESLSDSPELVNESPFEGAW 100 >ref|NP_465948.1| similar to glycine cleavage system protein H [Listeria monocytogenes EGD-e] sp|Q8Y4L2|GCSH_LISMO Glycine cleavage system H protein pir||AI1377 glycine cleavage system protein H homolog lmo2425 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00503.1| lmo2425 [Listeria monocytogenes] Length = 125 Score = 131 bits (329), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 63/100 (63%), Positives = 76/100 (76%), Gaps = 1/100 (1%) Query: 7 NLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGSIESVKT 66 +LLY+EEHEW + +G V IGITD AQ LGDIVFVE PEVG ++ GDS+GSIESVKT Sbjct: 6 DLLYTEEHEWVKADDGSYV-IGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKT 64 Query: 67 VSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELE 106 VS+ Y+PV+G V +N+TLE PELIN PY GWI +LE Sbjct: 65 VSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILKLE 104 >ref|NP_960473.1| GcvH [Mycobacterium avium subsp. paratuberculosis str. k10] gb|AAS03856.1| GcvH [Mycobacterium avium subsp. paratuberculosis str. k10] Length = 132 Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 57/108 (52%), Positives = 81/108 (75%) Query: 1 MSEVLDNLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGS 60 MS++ +L Y+ EHEW ++ VR+GITD AQ LGD+VFV+ PEVGA ++AG+S G Sbjct: 1 MSDIPPDLHYTAEHEWVRRSGDDTVRVGITDFAQSALGDVVFVQLPEVGAQLTAGESFGE 60 Query: 61 IESVKTVSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELEIS 108 +ES K+VS+LY+PVSGTVT +N LE SP+L+N PY GW+ ++++S Sbjct: 61 VESTKSVSDLYAPVSGTVTAVNTDLEGSPQLVNSDPYGAGWLLDVQVS 108 >ref|NP_457452.1| glycine cleavage system H protein [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_708667.1| glycine cleavage system H protein [Shigella flexneri 2a str. 301] ref|NP_806664.1| glycine cleavage system H protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AD0873 glycine cleavage system H protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) emb|CAD02884.1| glycine cleavage system H protein [Salmonella enterica subsp. enterica serovar Typhi] gb|AAN44374.1| glycine cleavage system H protein [Shigella flexneri 2a str. 301] gb|AAO70524.1| glycine cleavage system H protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 130 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 59/110 (53%), Positives = 78/110 (70%) Query: 1 MSEVLDNLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGS 60 MS V L YS+EHEW ++ +GIT+HAQ LLGD+VFV+ PEVGA +SAGD Sbjct: 2 MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAV 61 Query: 61 IESVKTVSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELEISGE 110 ESVK S++Y+PVSG + +ND L SPEL+N +PY+GGWIF+++ S E Sbjct: 62 AESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDE 111 >ref|NP_461970.1| glycine cleavage complex protein H [Salmonella typhimurium LT2] sp|Q8ZM75|GCSH_SALTY Glycine cleavage system H protein gb|AAL21929.1| glycine cleavage complex protein H [Salmonella typhimurium LT2] Length = 129 Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 59/110 (53%), Positives = 78/110 (70%) Query: 1 MSEVLDNLLYSEEHEWAQQGEGRVVRIGITDHAQHLLGDIVFVEFPEVGAAISAGDSVGS 60 MS V L YS+EHEW ++ +GIT+HAQ LLGD+VFV+ PEVGA +SAGD Sbjct: 1 MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAV 60 Query: 61 IESVKTVSELYSPVSGTVTKINDTLEASPELINDQPYSGGWIFELEISGE 110 ESVK S++Y+PVSG + +ND L SPEL+N +PY+GGWIF+++ S E Sbjct: 61 AESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWIFKIKASDE 110 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 175,176,596 Number of extensions: 6117367 Number of successful extensions: 14356 Number of sequences better than 1.0e-05: 493 Number of HSP's gapped: 14203 Number of HSP's successfully gapped: 493 Length of query: 130 Length of database: 757,237,578 Length adjustment: 93 Effective length of query: 37 Effective length of database: 504,733,371 Effective search space: 18675134727 Effective search space used: 18675134727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 120 (50.8 bits)