BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0010.p (450 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_833939.1| Glycine dehydrogenase [decarboxylating] [Bacill... 496 e-139 ref|NP_980597.1| glycine cleavage system P-protein, subunit 1 [B... 496 e-139 ref|NP_658262.1| GDC-P, G cleavage system P-protein [Bacillus an... 494 e-138 ref|NP_390336.1| similar to glycine dehydrogenase [Bacillus subt... 489 e-137 ref|NP_243681.1| glycine dehydrogenase subunit 1 [Bacillus halod... 484 e-135 >ref|NP_833939.1| Glycine dehydrogenase [decarboxylating] [Bacillus cereus ATCC 14579] sp|Q818M4|GCSA_BACCR Probable glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) gb|AAP11140.1| Glycine dehydrogenase [decarboxylating] [Bacillus cereus ATCC 14579] Length = 447 Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/440 (54%), Positives = 307/440 (69%), Gaps = 3/440 (0%) Query: 1 MKHRYLPMTEQDRKEMMEAVGIQSVEELFADIPQSVRYHGTMPMSEALDEYTLLRHMKEL 60 M HRYLPMTE+D+KEM++ +G+Q+++ELF+DIP+SVR+ G + + EA E LL+ + ++ Sbjct: 1 MLHRYLPMTEEDKKEMLQTIGVQTIDELFSDIPESVRFKGDLKIKEAKSEPELLKELSQM 60 Query: 61 SDKNASFDTHASFLGAGLYDHHIPVVINHVISRSEFYTAYTPYQPEISQGELQAIFEFQS 120 + KNA+ +ASFLGAG+YDH+ PV+++HVISRSEFYTAYTPYQPEISQGELQAIFEFQ+ Sbjct: 61 ASKNANLKEYASFLGAGVYDHYAPVIVDHVISRSEFYTAYTPYQPEISQGELQAIFEFQT 120 Query: 121 YICELTGMKVANASMYDGXXXXXXXXXXXXXXTKRKKLVVSRTVHPEARQVLRTSAGAWG 180 ICELTGM VAN+SMYDG T++KK++VS VHPE+R VL T A Sbjct: 121 MICELTGMDVANSSMYDGGTALAEAAMLAAGHTRKKKILVSSAVHPESRAVLETYAKGQN 180 Query: 181 LDVVEIDYKDGVTDGAKLAAAIDSDTAAVLVQSPNFFGAIEDLGAIEPLIHAVKGLLVVS 240 L+VVEI++KDGVTD L + +D A V+VQ PNFFG +E L IE ++H K L +VS Sbjct: 181 LEVVEINHKDGVTDLDVLQSEVDDTVACVIVQYPNFFGQVEKLADIEKIVHQQKSLFIVS 240 Query: 241 ANPLALGILETPGKLGADIVVGDAQPLGIPASLGGPTCGFFAVAEPLMRRMPGRIVGQTV 300 +NPL+LG L PGK GADIV+GDAQP GIP GGP CG+FA + MR++PGR+VGQTV Sbjct: 241 SNPLSLGALTPPGKFGADIVIGDAQPFGIPTQFGGPHCGYFATTKAFMRKIPGRLVGQTV 300 Query: 301 DRNGKRGFVLTLQAREQHIRREKATSNICSNQALLALCASVYLSVMGKEGMREVGELNIR 360 D +GKRGFVLTLQAREQHIRR+KATSNICSNQAL AL ASV ++ +GK+G++E+ NI Sbjct: 301 DSDGKRGFVLTLQAREQHIRRDKATSNICSNQALNALAASVAMTALGKQGVKEMARQNIS 360 Query: 361 KSHYXXXXXXXXXXXXXXXXXXXXNEFVLKLPEGASVSGINAKLLKQXXXXXXXXXXXXP 420 K+ Y NEFV+ V +N LL++ Sbjct: 361 KAQY-AKRQFEAKGFTVTFAGPFFNEFVVDCKR--PVKEVNDALLQKNIIGGYDLGRDYK 417 Query: 421 ELAGHMLVAVTEKRSKTEID 440 E HMLVAVTE R+K EID Sbjct: 418 EHENHMLVAVTELRTKEEID 437 >ref|NP_980597.1| glycine cleavage system P-protein, subunit 1 [Bacillus cereus ATCC 10987] gb|AAS43205.1| glycine cleavage system P-protein, subunit 1 [Bacillus cereus ATCC 10987] Length = 447 Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/440 (54%), Positives = 307/440 (69%), Gaps = 3/440 (0%) Query: 1 MKHRYLPMTEQDRKEMMEAVGIQSVEELFADIPQSVRYHGTMPMSEALDEYTLLRHMKEL 60 M HRYLPMTE+D+KEM++ +G+Q+++ELF+DIP+SVR+ G + + EA E LL+ + ++ Sbjct: 1 MLHRYLPMTEEDKKEMLQTIGVQTIDELFSDIPESVRFKGDLKIKEAKSESELLKELSQM 60 Query: 61 SDKNASFDTHASFLGAGLYDHHIPVVINHVISRSEFYTAYTPYQPEISQGELQAIFEFQS 120 + KNA+ +ASFLGAG+YDH+ PV+++HVISRSEFYTAYTPYQPEISQGELQAIFEFQ+ Sbjct: 61 ASKNANLKEYASFLGAGVYDHYAPVIVDHVISRSEFYTAYTPYQPEISQGELQAIFEFQT 120 Query: 121 YICELTGMKVANASMYDGXXXXXXXXXXXXXXTKRKKLVVSRTVHPEARQVLRTSAGAWG 180 ICELTGM VAN+SMYDG T++KK++VS VHPE+R VL T A Sbjct: 121 MICELTGMDVANSSMYDGGTALAEAAMLAAGHTRKKKILVSSAVHPESRAVLETYAKGQH 180 Query: 181 LDVVEIDYKDGVTDGAKLAAAIDSDTAAVLVQSPNFFGAIEDLGAIEPLIHAVKGLLVVS 240 L+VVEI++KDGVTD L + +D A V+VQ PNFFG +E L IE ++H K L +VS Sbjct: 181 LEVVEINHKDGVTDLDVLQSEVDDTVACVIVQYPNFFGQVEKLADIEKIVHQQKSLFIVS 240 Query: 241 ANPLALGILETPGKLGADIVVGDAQPLGIPASLGGPTCGFFAVAEPLMRRMPGRIVGQTV 300 +NPL+LG L PGK GADIV+GDAQP GIP GGP CG+FA + MR++PGR+VGQTV Sbjct: 241 SNPLSLGALTPPGKFGADIVIGDAQPFGIPTQFGGPHCGYFATTKAFMRKIPGRLVGQTV 300 Query: 301 DRNGKRGFVLTLQAREQHIRREKATSNICSNQALLALCASVYLSVMGKEGMREVGELNIR 360 D +GKRGFVLTLQAREQHIRR+KATSNICSNQAL AL ASV ++ +GK+G++E+ NI Sbjct: 301 DSDGKRGFVLTLQAREQHIRRDKATSNICSNQALNALAASVAMTALGKQGVKEMARQNIS 360 Query: 361 KSHYXXXXXXXXXXXXXXXXXXXXNEFVLKLPEGASVSGINAKLLKQXXXXXXXXXXXXP 420 K+ Y NEFV+ V +N LL++ Sbjct: 361 KAQY-AKRQFEAKGFTVTFAGPFFNEFVVDCKR--PVKEVNDALLQKNIIGGYDLGRDYK 417 Query: 421 ELAGHMLVAVTEKRSKTEID 440 E HMLVAVTE R+K EID Sbjct: 418 EHENHMLVAVTELRTKEEID 437 >ref|NP_658262.1| GDC-P, G cleavage system P-protein [Bacillus anthracis A2012] ref|NP_846676.1| glycine cleavage system P-protein, subunit 1 [Bacillus anthracis str. Ames] sp|Q81M07|GCSA_BACAA Probable glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) gb|AAP28162.1| glycine cleavage system P-protein, subunit 1 [Bacillus anthracis str. Ames] Length = 447 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 241/440 (54%), Positives = 307/440 (69%), Gaps = 3/440 (0%) Query: 1 MKHRYLPMTEQDRKEMMEAVGIQSVEELFADIPQSVRYHGTMPMSEALDEYTLLRHMKEL 60 M HRYLPMTE+D+KEM++ +G+Q+++ELF+DIP+SVR+ G + + EA E LL+ + ++ Sbjct: 1 MLHRYLPMTEEDKKEMLQTIGVQTIDELFSDIPESVRFKGDLKIKEAKSEPELLKELSQM 60 Query: 61 SDKNASFDTHASFLGAGLYDHHIPVVINHVISRSEFYTAYTPYQPEISQGELQAIFEFQS 120 + KNA+ +ASFLGAG+YDH+ PV+++HVISRSEFYTAYTPYQPEISQGELQAIFEFQ+ Sbjct: 61 ASKNANLKEYASFLGAGVYDHYAPVIVDHVISRSEFYTAYTPYQPEISQGELQAIFEFQT 120 Query: 121 YICELTGMKVANASMYDGXXXXXXXXXXXXXXTKRKKLVVSRTVHPEARQVLRTSAGAWG 180 ICELTGM VAN+SMYDG T++KK++VS VHPE+R VL T A Sbjct: 121 MICELTGMDVANSSMYDGGTALAEAAMLAAGHTRKKKILVSSAVHPESRAVLETYAKGQH 180 Query: 181 LDVVEIDYKDGVTDGAKLAAAIDSDTAAVLVQSPNFFGAIEDLGAIEPLIHAVKGLLVVS 240 L+VVEI++KDGVTD L + +D A V+VQ PNFFG +E L IE ++H K L +VS Sbjct: 181 LEVVEINHKDGVTDLDVLQSEVDDTVACVIVQYPNFFGQVEKLADIEKIVHQQKSLFIVS 240 Query: 241 ANPLALGILETPGKLGADIVVGDAQPLGIPASLGGPTCGFFAVAEPLMRRMPGRIVGQTV 300 +NPL+LG L PGK GADIV+GDAQP GIP GGP CG+FA + MR++PGR+VGQTV Sbjct: 241 SNPLSLGALTPPGKFGADIVIGDAQPFGIPTQFGGPHCGYFATTKAFMRKIPGRLVGQTV 300 Query: 301 DRNGKRGFVLTLQAREQHIRREKATSNICSNQALLALCASVYLSVMGKEGMREVGELNIR 360 D +GKRGFVLTLQAREQHIRR+KATSNICSNQAL AL ASV ++ +GK+G++E+ NI Sbjct: 301 DSDGKRGFVLTLQAREQHIRRDKATSNICSNQALNALAASVAMTALGKQGVKEMARQNIS 360 Query: 361 KSHYXXXXXXXXXXXXXXXXXXXXNEFVLKLPEGASVSGINAKLLKQXXXXXXXXXXXXP 420 K+ Y NEFV+ V +N LL++ Sbjct: 361 KAQY-AKRQFEAKGFTVTFAGPFFNEFVVDCKR--PVKEVNDALLQKNIIGGYDLGRDYK 417 Query: 421 ELAGHMLVAVTEKRSKTEID 440 E HMLVAVTE R+K EID Sbjct: 418 EHENHMLVAVTELRTKEEID 437 >ref|NP_390336.1| similar to glycine dehydrogenase [Bacillus subtilis] sp|P54376|GCSA_BACSU Probable glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) pir||A69959 glycine dehydrogenase homolog yqhJ - Bacillus subtilis dbj|BAA12547.1| YqhJ [Bacillus subtilis] emb|CAB14387.1| glycine decarboxylase (subunit 1) (glycine cleavage system protein P) [Bacillus subtilis subsp. subtilis str. 168] Length = 448 Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust. Identities = 243/440 (55%), Positives = 308/440 (70%), Gaps = 3/440 (0%) Query: 1 MKHRYLPMTEQDRKEMMEAVGIQSVEELFADIPQSVRYHGTMPMSEALDEYTLLRHMKEL 60 MKHRYLP TE+D++EM+ +G+ S+++LFADIP++V+Y + +A E L R + +L Sbjct: 1 MKHRYLPATEKDKQEMLATIGVSSIDDLFADIPENVKYKKEHQIKKAKSETELTRELTKL 60 Query: 61 SDKNASFDTHASFLGAGLYDHHIPVVINHVISRSEFYTAYTPYQPEISQGELQAIFEFQS 120 + KN +ASFLGAG+YDH+ PV+++HVISRSEFYTAYTPYQPEISQGELQAIFEFQ+ Sbjct: 61 ASKNRDTVQYASFLGAGVYDHYQPVIVDHVISRSEFYTAYTPYQPEISQGELQAIFEFQT 120 Query: 121 YICELTGMKVANASMYDGXXXXXXXXXXXXXXTKRKKLVVSRTVHPEARQVLRTSAGAWG 180 ICELTGM +AN+SMYDG TK+KK+VVS+TVHPE+R+VL+T A Sbjct: 121 MICELTGMDIANSSMYDGGTALAEAAMLASGHTKKKKIVVSKTVHPESREVLKTYAKGQY 180 Query: 181 LDVVEIDYKDGVTDGAKLAAAIDSDTAAVLVQSPNFFGAIEDLGAIEPLIHAVKGLLVVS 240 +DVVE+ DGVTD L + +TAAV+VQ PNFFG IE L IEP+ H K + +VS Sbjct: 181 IDVVEVPAADGVTDLDALRQTVCENTAAVIVQYPNFFGRIEPLKDIEPIAHQGKSMFIVS 240 Query: 241 ANPLALGILETPGKLGADIVVGDAQPLGIPASLGGPTCGFFAVAEPLMRRMPGRIVGQTV 300 ANPLALG+L PGK +DIVVGDA GIP++ GGP CGFFAV + LMR++PGR+VGQT Sbjct: 241 ANPLALGLLTPPGKFQSDIVVGDAHRFGIPSAYGGPHCGFFAVTKKLMRKVPGRLVGQTE 300 Query: 301 DRNGKRGFVLTLQAREQHIRREKATSNICSNQALLALCASVYLSVMGKEGMREVGELNIR 360 D NGKRGFVLTLQAREQHIRR+KATSNICSNQAL AL ASV ++ +GK G++++ N+ Sbjct: 301 DENGKRGFVLTLQAREQHIRRDKATSNICSNQALNALAASVAMTALGKNGVKDIARQNLL 360 Query: 361 KSHYXXXXXXXXXXXXXXXXXXXXNEFVLKLPEGASVSGINAKLLKQXXXXXXXXXXXXP 420 K++Y NEFV+KL E V +N +LL + P Sbjct: 361 KANY-AKQEAKKAGLTVMFDGPMFNEFVIKLDE--PVRAVNKRLLAKGMIGGYDLGLTYP 417 Query: 421 ELAGHMLVAVTEKRSKTEID 440 EL HML+AVTE R+K EID Sbjct: 418 ELDCHMLIAVTELRTKEEID 437 >ref|NP_243681.1| glycine dehydrogenase subunit 1 [Bacillus halodurans] sp|Q9K935|GCSA_BACHD Probable glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) pir||G84001 glycine dehydrogenase subunit 1 BH2815 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06534.1| glycine dehydrogenase subunit 1 [Bacillus halodurans] Length = 447 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 245/442 (55%), Positives = 309/442 (69%), Gaps = 3/442 (0%) Query: 1 MKHRYLPMTEQDRKEMMEAVGIQSVEELFADIPQSVRYHGTMPMSEALDEYTLLRHMKEL 60 M HRYLPMT DR+EM++A+G+ S+EELF+DIPQ +R+ G + + AL E L+R+ ++L Sbjct: 1 MNHRYLPMTTDDRQEMLQAIGVDSIEELFSDIPQDIRFKGKLNIPNALKEPELIRYFQQL 60 Query: 61 SDKNASFDTHASFLGAGLYDHHIPVVINHVISRSEFYTAYTPYQPEISQGELQAIFEFQS 120 +++N ASFLGAG+YDH+IP +++HVISRSEFYTAYTPYQPEISQGELQAIFEFQ+ Sbjct: 61 ANENVHLKDKASFLGAGVYDHYIPSIVDHVISRSEFYTAYTPYQPEISQGELQAIFEFQT 120 Query: 121 YICELTGMKVANASMYDGXXXXXXXXXXXXXXTKRKKLVVSRTVHPEARQVLRTSAGAWG 180 ICELTGM+VAN+SMYDG TK+KK++VS+ VHPEAR VL T+A Sbjct: 121 MICELTGMEVANSSMYDGPTALAEAAMMSCGHTKKKKILVSKAVHPEARDVLMTNAYGQR 180 Query: 181 LDVVEIDYKDGVTDGAKLAAAIDSDTAAVLVQSPNFFGAIEDLGAIEPLIHAVKGLLVVS 240 L+VVEID +GVTD L A D +TA V+VQ PNFFG +E L IE + H K VVS Sbjct: 181 LEVVEIDTNNGVTDVEHLKALYDEETACVIVQHPNFFGRLEPLAEIESVSHQGKATFVVS 240 Query: 241 ANPLALGILETPGKLGADIVVGDAQPLGIPASLGGPTCGFFAVAEPLMRRMPGRIVGQTV 300 +NPLALG+L+ PG GAD+VVGDAQP GIP GGP CG+FA + LMR++PGR+VGQT Sbjct: 241 SNPLALGLLKPPGAFGADVVVGDAQPFGIPTQYGGPHCGYFATTKKLMRKVPGRLVGQTT 300 Query: 301 DRNGKRGFVLTLQAREQHIRREKATSNICSNQALLALCASVYLSVMGKEGMREVGELNIR 360 D G+RGFVLTLQAREQHIRREKATSNICSNQAL AL A+V ++ +GK G++E+ N++ Sbjct: 301 DDQGQRGFVLTLQAREQHIRREKATSNICSNQALNALAAAVAMATIGKRGVKEMALQNVQ 360 Query: 361 KSHYXXXXXXXXXXXXXXXXXXXXNEFVLKLPEGASVSGINAKLLKQXXXXXXXXXXXXP 420 K+ Y NEF++KL + + + LL + P Sbjct: 361 KAAY-AKSQLKANGVEIVAEGPCFNEFIIKL--SSPLHEVEEALLAKGFIAGYDLGKVYP 417 Query: 421 ELAGHMLVAVTEKRSKTEIDQF 442 EL GHMLVAVTE R+K EIDQF Sbjct: 418 ELEGHMLVAVTEVRTKEEIDQF 439 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 559,080,164 Number of extensions: 21338022 Number of successful extensions: 49698 Number of sequences better than 1.0e-05: 631 Number of HSP's gapped: 48731 Number of HSP's successfully gapped: 633 Length of query: 450 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 321 Effective length of database: 406,989,807 Effective search space: 130643728047 Effective search space used: 130643728047 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)