BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0003.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_624056.1| ABC-type multidrug transport system, ATPase com... 308 1e-82 ref|NP_346882.1| ABC-type multidrug transport system, ATP-ase co... 306 5e-82 ref|NP_978182.1| ABC transporter, ATP-binding protein [Bacillus ... 298 1e-79 ref|NP_655659.1| ABC_tran, ABC transporter [Bacillus anthracis A... 295 8e-79 ref|NP_831509.1| Export ABC transporter ATP-binding protein [Bac... 294 2e-78 >ref|NP_624056.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM25660.1| ABC-type multidrug transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 311 Score = 308 bits (789), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 158/311 (50%), Positives = 204/311 (65%) Query: 3 MAFAVLSDVVKRYDQKLTVDHVNFSIQEGEIFGLLGPNGAGKSTTISMICGLLKADGGDI 62 M + D+ KR+ + +D+VN I+EGEI+GLLGPNGAGK+T IS+ICGL+ D G++ Sbjct: 1 MKIVRMKDLTKRFGNIIALDNVNLEIEEGEIYGLLGPNGAGKTTAISIICGLISFDRGEV 60 Query: 63 VIDGLSVLSKPLEVKKRIGLVPQELALYENMTATENVSFFXXXXXXXXXXXXERVEEALA 122 + + +KK IG+VPQ++A+Y ++TA ENV FF E VE AL Sbjct: 61 YVFDKDIRKDAEFIKKNIGIVPQDVAIYGDLTAYENVKFFASLYGLKGKELKENVEMALE 120 Query: 123 FTGLSDRAKDKPSTFSGGMKRRLNIACAIMHRPKLIIMDEPTVGIDPQSRNHILESVKAL 182 F GLSD+AK+ P+ FSGGMKRRLNIACAI +RPKLIIMDEPTVGIDPQSRNHILESVK L Sbjct: 121 FVGLSDKAKEVPNKFSGGMKRRLNIACAIAYRPKLIIMDEPTVGIDPQSRNHILESVKKL 180 Query: 183 NKLGSTVIYTSHYMEEVAAICDRVAIMDKGHIIACGTERELRERVAHEERIVVKAAHITP 242 N++GST+IYTSHYMEEV AIC R++IMD G +IA GT+ EL V + ++ I Sbjct: 181 NEMGSTIIYTSHYMEEVEAICTRISIMDHGKVIAEGTKGELISMVTDVNTVYIEIGSIDG 240 Query: 243 ALIQELGKHPRINRAELNGDTVELYLPSSQSELQDILFIFAKHEGVIASLNIEEPDLETL 302 +EL + E+ T+++ S DI+ F I +L E PDLET+ Sbjct: 241 IKEEELKGIKGVKDVEIKDSTIKITSLKDVSNFDDIIHYFISKNIPIRNLRNEIPDLETV 300 Query: 303 FLSLTGRTLRD 313 FL+LTGR LRD Sbjct: 301 FLTLTGRKLRD 311 >ref|NP_346882.1| ABC-type multidrug transport system, ATP-ase compoment [Clostridium acetobutylicum] pir||C96929 ABC-type multidrug transport system, ATP-ase compoment CAC0241 [imported] - Clostridium acetobutylicum gb|AAK78222.1| ABC-type multidrug transport system, ATP-ase compoment [Clostridium acetobutylicum] Length = 310 Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 147/306 (48%), Positives = 209/306 (68%) Query: 8 LSDVVKRYDQKLTVDHVNFSIQEGEIFGLLGPNGAGKSTTISMICGLLKADGGDIVIDGL 67 + ++ K Y + VD +N I++GEI+GLLGPNGAGKSTTI+ I GL K D G+I I G Sbjct: 5 IKNLKKTYKEFTAVDSLNLKIEDGEIYGLLGPNGAGKSTTINTITGLTKVDSGEIKIFGK 64 Query: 68 SVLSKPLEVKKRIGLVPQELALYENMTATENVSFFXXXXXXXXXXXXERVEEALAFTGLS 127 +K+ IG+VPQ++A++ ++A ENV+FF ERV+EAL FTGL Sbjct: 65 RFNGSDTNIKRNIGVVPQDIAVFSELSAYENVAFFGKLNGLRGAVLKERVKEALDFTGLW 124 Query: 128 DRAKDKPSTFSGGMKRRLNIACAIMHRPKLIIMDEPTVGIDPQSRNHILESVKALNKLGS 187 DR K KP +SGGM+RRLNIACAI+HRPKLIIMDEPTVGIDPQSRNHIL+SVK LN++GS Sbjct: 125 DRRKSKPGQYSGGMQRRLNIACAIVHRPKLIIMDEPTVGIDPQSRNHILDSVKKLNEMGS 184 Query: 188 TVIYTSHYMEEVAAICDRVAIMDKGHIIACGTERELRERVAHEERIVVKAAHITPALIQE 247 T+IYTSHYMEE+ +C ++ I+D G IA GT+ +L+E +++EE++ ++ + +T L++ Sbjct: 185 TIIYTSHYMEEIETLCSKITIIDHGKEIATGTKEQLKEMISNEEKVELELSEVTDDLVEA 244 Query: 248 LGKHPRINRAELNGDTVELYLPSSQSELQDILFIFAKHEGVIASLNIEEPDLETLFLSLT 307 + + + N + + + + + I A+ + I S+N+E+P LE +FL+LT Sbjct: 245 VEGIKNVKKCRRNENMLVIVSDKNSENISTITAKIAEFKSKIISINVEKPSLEGVFLTLT 304 Query: 308 GRTLRD 313 GR LRD Sbjct: 305 GRKLRD 310 >ref|NP_978182.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS40790.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 312 Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/306 (48%), Positives = 209/306 (68%) Query: 8 LSDVVKRYDQKLTVDHVNFSIQEGEIFGLLGPNGAGKSTTISMICGLLKADGGDIVIDGL 67 + ++ K++ + VD+++ SI+EGEIFG LG NGAGKSTTI+M+ GLL+++ G+I I G Sbjct: 6 IKNLTKKFGDFIAVDNMSLSIKEGEIFGFLGSNGAGKSTTINMVAGLLRSNEGEISILGK 65 Query: 68 SVLSKPLEVKKRIGLVPQELALYENMTATENVSFFXXXXXXXXXXXXERVEEALAFTGLS 127 ++ K IG+VPQ++A+YE +TA ENV FF RVEEAL F GLS Sbjct: 66 NIKKHNRFAKMNIGIVPQDIAIYEELTAYENVKFFAGLYGLRGAELKARVEEALQFVGLS 125 Query: 128 DRAKDKPSTFSGGMKRRLNIACAIMHRPKLIIMDEPTVGIDPQSRNHILESVKALNKLGS 187 D+ K P FSGGMKRRLNIACAI HRPKLIIMDEPTVGIDPQSRN+IL+SV+ LN++GS Sbjct: 126 DKYKSYPKNFSGGMKRRLNIACAIAHRPKLIIMDEPTVGIDPQSRNYILQSVRKLNEMGS 185 Query: 188 TVIYTSHYMEEVAAICDRVAIMDKGHIIACGTERELRERVAHEERIVVKAAHITPALIQE 247 T+IYTSHYMEEV IC ++AI+D G +IA GT+ +L+ + + I ++ + +++ Sbjct: 186 TIIYTSHYMEEVEEICTKIAIVDHGKVIAEGTKEQLKAIITDTKDIWIEVKSVENLDVEQ 245 Query: 248 LGKHPRINRAELNGDTVELYLPSSQSELQDILFIFAKHEGVIASLNIEEPDLETLFLSLT 307 L + + +++ + +++ + + L I+ F H+ I SL + P+LET+FL+LT Sbjct: 246 LKEINGVKAVQIDENVIKVNSDAGLNNLNKIIQHFINHDIEIRSLEEQAPNLETVFLTLT 305 Query: 308 GRTLRD 313 GR LRD Sbjct: 306 GRNLRD 311 >ref|NP_655659.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_844218.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP25704.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 312 Score = 295 bits (756), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 147/306 (48%), Positives = 207/306 (67%) Query: 8 LSDVVKRYDQKLTVDHVNFSIQEGEIFGLLGPNGAGKSTTISMICGLLKADGGDIVIDGL 67 + ++ K++ + VD+++ SI+EGEIFG LG NGAGKSTTI+MI GLL+++ G+I I G Sbjct: 6 IKNLTKKFGDFIAVDNMSLSIKEGEIFGFLGSNGAGKSTTINMIAGLLRSNEGEISILGK 65 Query: 68 SVLSKPLEVKKRIGLVPQELALYENMTATENVSFFXXXXXXXXXXXXERVEEALAFTGLS 127 ++ K IG+VPQ++A+YE +TA ENV FF RVEEAL F GLS Sbjct: 66 NIKKHNRFAKMNIGVVPQDIAIYEELTAYENVKFFAGLYGLRGAELKARVEEALQFVGLS 125 Query: 128 DRAKDKPSTFSGGMKRRLNIACAIMHRPKLIIMDEPTVGIDPQSRNHILESVKALNKLGS 187 D+ K P FSGGMKRRLNIACAI HRPKLIIMDEPTVGIDPQSRN+IL+SV+ LN++GS Sbjct: 126 DKQKSFPKNFSGGMKRRLNIACAIAHRPKLIIMDEPTVGIDPQSRNYILQSVRKLNEMGS 185 Query: 188 TVIYTSHYMEEVAAICDRVAIMDKGHIIACGTERELRERVAHEERIVVKAAHITPALIQE 247 T+IYTSHYMEEV IC ++AI+D G +IA GT+ +L+ + + I ++ + +++ Sbjct: 186 TIIYTSHYMEEVEEICTKIAIVDHGKVIAEGTKEQLKAIITDTKDIWIEVKSVENLDVEK 245 Query: 248 LGKHPRINRAELNGDTVELYLPSSQSELQDILFIFAKHEGVIASLNIEEPDLETLFLSLT 307 L + + ++ + +++ + + L + F H+ I SL + P+LET+FL+LT Sbjct: 246 LKEINGVKAVQIEENVIKVNSDAGLNNLNKFIQHFINHDIEIRSLEEQAPNLETVFLTLT 305 Query: 308 GRTLRD 313 GR LRD Sbjct: 306 GRNLRD 311 >ref|NP_831509.1| Export ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP08710.1| Export ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 313 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/306 (48%), Positives = 207/306 (67%) Query: 8 LSDVVKRYDQKLTVDHVNFSIQEGEIFGLLGPNGAGKSTTISMICGLLKADGGDIVIDGL 67 + ++ K++ + VD+++ SI+EGEIFG LG NGAGKSTTI+MI GLL+++ G+I I G Sbjct: 7 IKNLTKKFGNFIAVDNMSLSIKEGEIFGFLGSNGAGKSTTINMIAGLLRSNEGEISILGK 66 Query: 68 SVLSKPLEVKKRIGLVPQELALYENMTATENVSFFXXXXXXXXXXXXERVEEALAFTGLS 127 ++ K IG+VPQ++A+YE +TA ENV FF RVEEAL F GLS Sbjct: 67 NIKKHNRFAKMNIGIVPQDIAIYEELTAYENVKFFAGLYGLRGAELKARVEEALKFVGLS 126 Query: 128 DRAKDKPSTFSGGMKRRLNIACAIMHRPKLIIMDEPTVGIDPQSRNHILESVKALNKLGS 187 D+ K P FSGGMKRRLNIACAI HRPKLIIMDEPTVGIDPQSRN+IL+SV+ LN++GS Sbjct: 127 DKQKSYPKNFSGGMKRRLNIACAIAHRPKLIIMDEPTVGIDPQSRNYILQSVRKLNEMGS 186 Query: 188 TVIYTSHYMEEVAAICDRVAIMDKGHIIACGTERELRERVAHEERIVVKAAHITPALIQE 247 T+IYTSHYMEEV IC ++AI+D G +IA GT+ +L+ + + I ++ + +++ Sbjct: 187 TIIYTSHYMEEVEEICTKIAIVDHGKVIAEGTKEQLKAIITDTKDIWIEVKSVENLDVEK 246 Query: 248 LGKHPRINRAELNGDTVELYLPSSQSELQDILFIFAKHEGVIASLNIEEPDLETLFLSLT 307 L + + ++ + +++ + + L I+ H+ I SL + P+LET+FL+LT Sbjct: 247 LKEINGVKAVQIEENVIKVNSDAGLNNLNKIIQHCINHDIEIRSLEEQAPNLETVFLTLT 306 Query: 308 GRTLRD 313 GR LRD Sbjct: 307 GRNLRD 312 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 414,595,895 Number of extensions: 15919117 Number of successful extensions: 116595 Number of sequences better than 1.0e-05: 21143 Number of HSP's gapped: 90819 Number of HSP's successfully gapped: 22573 Length of query: 313 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 188 Effective length of database: 417,850,203 Effective search space: 78555838164 Effective search space used: 78555838164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)