BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0001.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_346881.1| Response regulator (CheY-like recever domain an... 218 1e-55 ref|NP_349541.1| Response regulator (CheY-like receiver domain a... 202 3e-51 ref|NP_722263.1| putative response regulator [Streptococcus muta... 197 1e-49 ref|NP_347501.1| Two-component response regulator [Clostridium a... 195 5e-49 ref|NP_488675.1| two-component response regulator [Nostoc sp. PC... 190 2e-47 >ref|NP_346881.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum] pir||B96929 response regulator (CheY-like recever domain and HTH DNA-binding domain) [imported] - Clostridium acetobutylicum gb|AAK78221.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum] Length = 208 Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 110/213 (51%), Positives = 151/213 (70%), Gaps = 6/213 (2%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 +KV+IVDDD+ IRESL +L+ L+ EIE+ G+ +G+EA + D+VLMDIRMP Sbjct: 1 MKVLIVDDDALIRESLSILLDLEDEIEIIGTCANGQEAFDFCKN-NRPDIVLMDIRMPIM 59 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV GTK IKE++ I V++LTTF DDEYI EAL+NGA GY+LKN D II +K V Sbjct: 60 DGVLGTKVIKESFKDIKVVILTTFKDDEYIKEALKNGAEGYILKNQSSDSIIDSLKAVVN 119 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++ ++A+ ++ F++ ++ LE Y LT+ E+ V+ I +G +NKEIA++L Sbjct: 120 GNMVFEQNVAKTISNFIK-----EDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKL 174 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKN 214 +LSEGTV+NYIT +L KL LRDRTQ+AIFY KN Sbjct: 175 YLSEGTVRNYITSLLEKLELRDRTQLAIFYLKN 207 >ref|NP_349541.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum] pir||F97261 response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [imported] - Clostridium acetobutylicum gb|AAK80881.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum] Length = 215 Score = 202 bits (515), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 102/214 (47%), Positives = 147/214 (68%), Gaps = 4/214 (1%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 I VVI DD+ IR+ LK+++ + EI V G A +G EA + ++ DVVL DIRMP C Sbjct: 4 INVVIADDEKLIRDGLKIILNANDEINVIGVAENGIEAAEICKR-EKVDVVLTDIRMPVC 62 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV+ TK IK + I VL+LTTF DDEYI EA++NGA+GY+LK+ + II +K+V++ Sbjct: 63 DGVKATKIIKNQFSDIKVLVLTTFKDDEYIFEAMKNGANGYILKDTSYEIIIDAVKSVYK 122 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++++P+IA K+ + +P + E Y LT ++ ++ I G +NKEIA + Sbjct: 123 GNVVVNPEIASKMVSGVMKTSPSSNEIK---EKYKLTDRQIEIIIAIGSGLSNKEIAEKQ 179 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 +++EGTVKN+IT+ILSKL +RDRTQIAIF KN+ Sbjct: 180 YVTEGTVKNHITEILSKLEMRDRTQIAIFALKNE 213 >ref|NP_722263.1| putative response regulator [Streptococcus mutans UA159] gb|AAN59569.1| putative response regulator [Streptococcus mutans UA159] Length = 226 Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 105/215 (48%), Positives = 147/215 (68%), Gaps = 10/215 (4%) Query: 1 MIKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHA--DVVLMDIRM 58 MIKV+I DD IRESLK++++ +IEV + DG A+LE + D+VLMDIRM Sbjct: 1 MIKVLIADDQELIRESLKIVLSSYKDIEVVDAVDDG---FAVLESMKKVQPDLVLMDIRM 57 Query: 59 PNCDGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKT 118 P DGV TK +KE YP + V++LTTFDDD++I +AL+ GASGY+LK I + + Q I T Sbjct: 58 PKMDGVLCTKAVKENYPNVKVIILTTFDDDDFIFKALQYGASGYILKGISMEDLYQAIVT 117 Query: 119 VHEGNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYG---LTKAELAVVSLIAEGHTNK 175 V++GN +I+PD+A K+ A A+ ++G ++KAE ++ I G +NK Sbjct: 118 VNKGNAMINPDVATKVVKLFSQMAQSNSAIQ--VQGNSVENISKAEWKIIQQIGFGLSNK 175 Query: 176 EIAAELFLSEGTVKNYITDILSKLGLRDRTQIAIF 210 EIAA+LFLSEGT++NY++ ILSKL LRDRTQ+AI+ Sbjct: 176 EIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAIW 210 >ref|NP_347501.1| Two-component response regulator [Clostridium acetobutylicum] pir||F97006 two-component response regulator [imported] - Clostridium acetobutylicum gb|AAK78841.1| Two-component response regulator [Clostridium acetobutylicum] Length = 218 Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 146/214 (68%), Gaps = 2/214 (0%) Query: 2 IKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPNC 61 IKVVIVDD+ + + LK+++ +I+V G+A +G EAL + Q DVVLMDIRMP C Sbjct: 4 IKVVIVDDEKLVVDGLKIILETYEDIKVVGTAKNGEEALRVCRQ-SSPDVVLMDIRMPKC 62 Query: 62 DGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVHE 121 DGV GTK IK+ + I +L+LTTF+D +YI EAL+ GASGY+LK+ + I +GIK + Sbjct: 63 DGVLGTKLIKKEFKDIKILILTTFNDVKYIHEALKYGASGYILKDSDYELIYEGIKAAFK 122 Query: 122 GNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAEL 181 GN++I+P++A K+ ++A+ + Y L+ E+ +V IA G +NKEIA +L Sbjct: 123 GNVVINPEVASKILS-ENGEYNKEQALEEVKTKYDLSDKEINIVREIASGLSNKEIAEKL 181 Query: 182 FLSEGTVKNYITDILSKLGLRDRTQIAIFYWKNQ 215 FLSEGT+KN I+ I SKL LRDRTQ+ IF +KN Sbjct: 182 FLSEGTIKNNISIIFSKLNLRDRTQVTIFAFKNN 215 >ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120] pir||AC2385 two-component response regulator all4635 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 219 Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/210 (47%), Positives = 142/210 (67%), Gaps = 3/210 (1%) Query: 1 MIKVVIVDDDSFIRESLKVLVALDPEIEVAGSAGDGREALALLEQLPHADVVLMDIRMPN 60 MIKV++VDD + IR+ L+ L+ L+P+IE+ G A +G+ A+ L+ Q H DVVLMD+RMP Sbjct: 1 MIKVLLVDDQNLIRQGLRALLELEPDIEIVGEAENGKIAIDLIPQF-HPDVVLMDMRMPI 59 Query: 61 CDGVEGTKFIKEAYPGISVLMLTTFDDDEYIIEALRNGASGYLLKNIPPDRIIQGIKTVH 120 DGV T+ I++ +P + VL+LTTFDDDEY+ AL++GA GYLLK+ P + + I+ V Sbjct: 60 MDGVAATQEIQQNFPNVKVLVLTTFDDDEYVKAALQHGAMGYLLKDTPSEELAVAIRAVE 119 Query: 121 EGNLLIHPDIARKLAGFLQPAAPPKEAMPKTLEGYGLTKAELAVVSLIAEGHTNKEIAAE 180 +G + P I +KL +Q + P P LT E V+ LIA G N+EIA + Sbjct: 120 KGYTQLGPGIVKKL--LVQFQSTPNHTPPAPTHLADLTPREKEVLRLIAAGANNREIAQQ 177 Query: 181 LFLSEGTVKNYITDILSKLGLRDRTQIAIF 210 L++SEGTVKN++T+IL++L LRDRTQ AI Sbjct: 178 LYISEGTVKNHVTNILNRLNLRDRTQAAII 207 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 318,567,516 Number of extensions: 12700493 Number of successful extensions: 45313 Number of sequences better than 1.0e-05: 1900 Number of HSP's gapped: 45789 Number of HSP's successfully gapped: 1901 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)