BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0007.p (581 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388702.1| similar to ABC transporter (ATP-binding protein... 563 e-159 ref|NP_692154.1| ABC transporter ATP-binding protein [Oceanobaci... 496 e-139 ref|NP_228099.1| ABC transporter, ATP-binding protein [Thermotog... 426 e-117 ref|NP_832133.1| Multidrug resistance ABC transporter ATP-bindin... 393 e-108 ref|NP_656299.1| ABC_tran, ABC transporter [Bacillus anthracis A... 390 e-107 >ref|NP_388702.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P54718|YFIB_BACSU Hypothetical ABC transporter ATP-binding protein yfiB pir||E69802 ABC transporter (ATP-binding protein) homolog yfiB - Bacillus subtilis dbj|BAA09106.1| unknown [Bacillus subtilis] emb|CAB12650.1| yfiB [Bacillus subtilis subsp. subtilis str. 168] Length = 573 Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust. Identities = 280/574 (48%), Positives = 384/574 (66%), Gaps = 6/574 (1%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M S+LK Y EL QPLLI++IIDDGI QD R VW+WG V++ Sbjct: 1 MQKALSFLKPYSLLAGIALILMLTELAVELMQPLLIAKIIDDGILKQDLRHVWIWGTVMI 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 VL+F AG+L+SF+A+H SQ F++D R L++K+QSF+Y+ F +F++SS ITRLT DV Sbjct: 61 GLTVLSFAAGMLNSFYAAHVSQSFSYDTRKGLFQKIQSFSYSTFGQFSSSSYITRLTNDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 +Q+Q+ IFM LRFM R P WV++K L Sbjct: 121 TQVQNMIFMSLRFMLRAPLMIAGGIVLSLAVNVKLGFFLLVTIPILILFLLWVLRKGGAL 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 FRSVQ RLD VN+++QENL I+LI+ +R +HE+ RF + LM+ TV+A +L E + Sbjct: 181 FRSVQKRLDQVNTIMQENLIAIKLIKALLRGSHEVKRFIKANTRLMEKTVSAFQLVEFTM 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P++ML++N I+L+LW G I++G +G VA+INY+ R GALS +++ F+RA+ Sbjct: 241 PVLMLLMNLCILLILWAGSYSITSGSTQVGDVVAIINYATRITGALSMFPFLIMIFTRAK 300 Query: 301 ASSQRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQ 360 AS RI EV+ E + +E ++ R + G++EF+ VSFRYP+ D L +++F + Sbjct: 301 ASGDRIGEVLET-EGDEREEGTISDR----LSGRIEFQHVSFRYPEMDREALRNVSFSAK 355 Query: 361 PGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVL 420 P + +AI+GATGSGKS+L LIPRLY+ SG I +D P ++ LR IGYVPQEVL Sbjct: 356 PRETIAILGATGSGKSTLFQLIPRLYQPDSGRIYIDEKPVQDIPAEGLRRQIGYVPQEVL 415 Query: 421 LFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQR 480 LF+G+++ENIAWG A+ DEI AA AQIHET+ +LPNGYDT+LGQRGVNLSGGQKQR Sbjct: 416 LFSGTIKENIAWGKENASLDEIMDAAKLAQIHETILKLPNGYDTVLGQRGVNLSGGQKQR 475 Query: 481 LTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLILL 540 ++IARAL+RKPA+L+LDDSTSALD TE++LL + CTT +ITQKI++ + AD ILL Sbjct: 476 ISIARALIRKPAILLLDDSTSALDLQTEAKLLEAISTYHCTTLIITQKITTAMKADQILL 535 Query: 541 LDEGRLIAQGTHEELMERSELYRKINESQH-REG 573 L++G LI +GTH EL+ S+LY++I ESQ REG Sbjct: 536 LEDGELIEKGTHSELLSESQLYKRIYESQFGREG 569 >ref|NP_692154.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC13189.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 576 Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust. Identities = 239/578 (41%), Positives = 362/578 (62%), Gaps = 2/578 (0%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M +FS++K Y+ EL PL + +I+ G+ QD + WG +++ Sbjct: 1 MRNVFSFIKPYKVSSIVALLLMLIELAVELLLPLFLGFMINQGVENQDLGNIGFWGSIMI 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 A+L+ I+G+++SF +SH S + +D+R +L+EK+Q F++A +++ TS+L+TR T D+ Sbjct: 61 GLAILSLISGIINSFISSHVSFAYGYDIRQKLFEKIQDFSFANLNQYPTSALVTRFTNDI 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 Q+Q+TIFM LR M + P W++K S L Sbjct: 121 RQIQNTIFMALRIMAKAPLTVIGGVIMAFIVNAQLAAVFLLTVPLLVIFLLWILKITSKL 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 F VQ +D VN V+QENL G+RLI+ F R E RF + EL +T R+ E++ Sbjct: 181 FTKVQGNVDNVNRVMQENLAGMRLIKAFSRRGFEEDRFGIANTELADATKKTFRIIESTG 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 P+++L++N ++ ++WFG + G+A +G+ V ++NY+LR A+S S+I+ SR + Sbjct: 241 PILLLVMNVSLIFIIWFGNAQTIAGQANVGEVVTMVNYALRVSMAISMFSFIIMAISRTK 300 Query: 301 ASSQRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQ 360 AS++RI+EV++ E ++ A+ +E+ GKV + VSF YP ++ L+DI+F V Sbjct: 301 ASAERIEEVLTLHN-EQEQQASSNDKEVVK-YGKVTYDHVSFTYPNANRPTLKDISFNVN 358 Query: 361 PGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVL 420 PG+ +AI+GATGSGK+SL L+PRLYE ++G I VD +P + LR +IGYVPQ L Sbjct: 359 PGESMAIIGATGSGKTSLFQLMPRLYEPTNGTIYVDDLPLDNYSFANLRDSIGYVPQSPL 418 Query: 421 LFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQR 480 LFTG++ +NIAWG +AT D++ QAA AQIH+T+ +L Y+T +GQ+GVNLSGGQKQR Sbjct: 419 LFTGTIFDNIAWGKREATMDDVIQAAKDAQIHDTIMQLEGKYETRVGQKGVNLSGGQKQR 478 Query: 481 LTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMSCTTFLITQKISSTVSADLILL 540 ++IARAL+RKP +L+LDDSTSALD TE++ L L+ CT F+ITQK+S+ +D ILL Sbjct: 479 ISIARALIRKPKILMLDDSTSALDLATEAQFLQALESYQCTVFIITQKVSTAKKSDRILL 538 Query: 541 LDEGRLIAQGTHEELMERSELYRKINESQHREGVQHVQ 578 LD G ++ GTH +L+ SELY+ I ESQ + H + Sbjct: 539 LDYGSILDIGTHAQLLHTSELYQSIAESQFEKEAHHAK 576 >ref|NP_228099.1| ABC transporter, ATP-binding protein [Thermotoga maritima] pir||E72396 ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8) gb|AAD35375.1| ABC transporter, ATP-binding protein [Thermotoga maritima] Length = 577 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 235/578 (40%), Positives = 339/578 (58%), Gaps = 5/578 (0%) Query: 1 MNIIFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLV 60 M + YLK Y +LSQP L++RI+D+GI D +V G +++ Sbjct: 1 MKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILML 60 Query: 61 VSAVLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADV 120 + A++ + G+ + FAS+ASQ F DLR L+ KV SF+ + +RF TSSLITRLT DV Sbjct: 61 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDV 120 Query: 121 SQLQDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVL 180 +QLQ+ + M LR + R P W+ KK + L Sbjct: 121 TQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPL 180 Query: 181 FRSVQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSA 240 FR +Q D VN V++ENL G+R++R F R +E F + L +S ++A L + Sbjct: 181 FRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFAL 240 Query: 241 PLIMLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRAR 300 PL + IVN G++ VLWFG + + + +G +A NY ++ + +L + I+ RA Sbjct: 241 PLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRAS 300 Query: 301 ASSQRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQ 360 AS++R+ EV+ +E A E A A + + G V F V FRY ++ VL + F V+ Sbjct: 301 ASAKRVLEVL--NEKPAIEEAD-NALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVK 357 Query: 361 PGDRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVL 420 PG VA++G TGSGKS+L+ LIPRL + G + VD + +++ LRG I VPQE + Sbjct: 358 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 417 Query: 421 LFTGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQR 480 LF+G+++EN+ WG AT DEI +AA AQIH+ + LP GYD+ + + G N SGGQKQR Sbjct: 418 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 477 Query: 481 LTIARALVRKPAVLILDDSTSALDAVTESRLLAELKGMS--CTTFLITQKISSTVSADLI 538 L+IARALV+KP VLILDD TS++D +TE R+L LK + CTTF+ITQKI + + AD I Sbjct: 478 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 537 Query: 539 LLLDEGRLIAQGTHEELMERSELYRKINESQHREGVQH 576 L+L EG++ GTH+EL+E + YR+I ESQ GV + Sbjct: 538 LVLHEGKVAGFGTHKELLEHCKPYREIYESQFGNGVMN 575 >ref|NP_832133.1| Multidrug resistance ABC transporter ATP-binding and permease protein [Bacillus cereus ATCC 14579] gb|AAP09334.1| Multidrug resistance ABC transporter ATP-binding and permease protein [Bacillus cereus ATCC 14579] Length = 584 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 216/576 (37%), Positives = 331/576 (57%), Gaps = 9/576 (1%) Query: 4 IFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLVVSA 63 + YLK Y +L QP ++ IID GI +D V G +++ +A Sbjct: 7 LLQYLKPYMFFAIIGPLFMVLEVAMDLIQPTIMQHIIDVGIANRDLNYVIKMGLLMIGAA 66 Query: 64 VLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADVSQL 123 L + G+ +++ A+ FA D+R ++ K+++F+ F T L+T +T D++ + Sbjct: 67 ALGLVGGLGCMMYSTKAAVNFATDIRKDVFAKIETFSSNNRDSFGTGKLLTIVTNDITSI 126 Query: 124 QDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVLFRS 183 Q + M LR + R P + KAS F+ Sbjct: 127 QSAMTMTLRVLVRGPLLFIGSIIIVFVTARELFPILLVVVPILLLAIILIASKASGTFKK 186 Query: 184 VQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSAPLI 243 VQ LD VN+ +QENL+G+R+I+ +VR +EIA+F + + L K + A++L P+I Sbjct: 187 VQEALDKVNTKLQENLSGVRVIKAYVRQKYEIAQFGSVNTNLTKINIRAVQLISLMMPII 246 Query: 244 MLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRARASS 303 ML+V+ GI+ LW G ++ G +G +A INY + +L ++S + +RA S+ Sbjct: 247 MLVVSGGIVATLWIGGEKVFNGTLQVGAILAFINYLNIILMSLMSISMVFIQIARAFPSA 306 Query: 304 QRIQEVMSADELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQPGD 363 R+Q+V++ E ++ A E+ I G +EF+ VS+ Y +++ VL+DI+F +Q G+ Sbjct: 307 DRVQQVLNT---EVDIISEANAIELEKIEGNIEFKNVSYSYTKNNEYVLKDISFNIQKGE 363 Query: 364 RVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVLLFT 423 +V I+G+TGSGKS+L L+PRLY+ G+I +DGI ++ +LR +IG+VPQ+ LLF+ Sbjct: 364 KVGIIGSTGSGKSTLAKLLPRLYDVDQGEICIDGIDVKTYDLQKLRASIGFVPQKALLFS 423 Query: 424 GSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQRLTI 483 GS+ EN+ +G AT DE+E AA +A E + +L Y L Q NLSGG KQR++I Sbjct: 424 GSIEENLRYGKENATHDELEVAAASACATEFINKLEESYQYNLTQGATNLSGGHKQRVSI 483 Query: 484 ARALVRKPAVLILDDSTSALDAVTESRLLAELKG--MSCTTFLITQKISSTVSADLILLL 541 ARALVRKP +LILDDSTSA+DA +E+ + LK TT LI KISS + AD IL+L Sbjct: 484 ARALVRKPPILILDDSTSAVDAKSEATIQTALKTKYKGTTTLLIASKISSIMDADKILVL 543 Query: 542 DEGRLIAQGTHEELMERSELYRKINESQ----HREG 573 D G L+ GTHE+L+ERSE+Y++I SQ H+EG Sbjct: 544 DNGELVGNGTHEQLLERSEVYQEIYLSQGGNLHKEG 579 >ref|NP_656299.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_844819.1| ABC transporter, ATP-binding/permease protein [Bacillus anthracis str. Ames] gb|AAP26305.1| ABC transporter, ATP-binding/permease protein [Bacillus anthracis str. Ames] Length = 584 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 213/579 (36%), Positives = 337/579 (58%), Gaps = 15/579 (2%) Query: 4 IFSYLKTYRXXXXXXXXXXXXXXXXELSQPLLISRIIDDGIRAQDNRIVWLWGGVLVVSA 63 + YLK Y +L QP ++ IID GI +D V G +++ +A Sbjct: 7 LLQYLKPYMFFAIIGPLFMVLEVAMDLIQPTIMQHIIDVGIANRDLNYVIKMGLLMIGAA 66 Query: 64 VLAFIAGVLSSFFASHASQGFAFDLRDQLYEKVQSFTYAVFSRFTTSSLITRLTADVSQL 123 L + G+ +++ A+ FA D+R ++ K+++F+ F T L+T +T D++ + Sbjct: 67 ALGLVGGLGCMMYSTKAAVNFATDIRKDVFAKIETFSSENRDSFGTGKLLTIVTNDITSI 126 Query: 124 QDTIFMGLRFMTRVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVMKKASVLFRS 183 Q + M LR + R P ++ +AS F+ Sbjct: 127 QSAMTMTLRVLVRGPLLFIGSIIIVFVTARELFPILLVVVPILLLAIIYIASRASGTFKK 186 Query: 184 VQNRLDGVNSVIQENLTGIRLIRVFVRMNHEIARFAAFSGELMKSTVAALRLTETSAPLI 243 VQ LD VN+ +QENL+G+R+I+ +VR +EI +F + L K + A++L P+I Sbjct: 187 VQEALDKVNTKLQENLSGVRVIKAYVRQKYEINQFGKVNTNLTKINIRAVQLISLMMPII 246 Query: 244 MLIVNAGIMLVLWFGRIEISTGEATLGQTVAVINYSLRTIGALSALSWIMATFSRARASS 303 ML+VN GI+ LW G ++ G +G +A INY + +L ++S + +RA S+ Sbjct: 247 MLVVNGGIVATLWVGGEKVFNGTLQVGAILAFINYLNIILMSLMSISMVFMQIARAFPSA 306 Query: 304 QRIQEVMSAD-ELEAKEMAAVTAREIAPIRGKVEFRQVSFRYPQSDIAVLEDITFKVQPG 362 R+Q+V++ D ++ + A R I G+++F+ VS+ Y +++ VL+DI+F++ G Sbjct: 307 DRVQQVLNTDVDITTPKNALAPKR----IEGQIDFKNVSYSYTKNNEYVLKDISFRIGKG 362 Query: 363 DRVAIMGATGSGKSSLVGLIPRLYEQSSGDILVDGIPGAEMEISRLRGAIGYVPQEVLLF 422 ++V ++G+TGSGKS+L L+PRLY+ G+I +DGI ++ +LRG+IG+VPQ+ LLF Sbjct: 363 EKVGVIGSTGSGKSTLAKLLPRLYDVDQGEICIDGINVKAYDLQKLRGSIGFVPQKALLF 422 Query: 423 TGSVRENIAWGHPQATQDEIEQAAMAAQIHETVQELPNGYDTMLGQRGVNLSGGQKQRLT 482 +GS+ EN+ +G AT++E+E AA +A E + +L + Y L Q NLSGGQKQR++ Sbjct: 423 SGSIEENLRYGKEDATKEELEVAASSACATEFINKLEDSYQYHLTQGATNLSGGQKQRVS 482 Query: 483 IARALVRKPAVLILDDSTSALDAVTESRLLA----ELKGMSCTTFLITQKISSTVSADLI 538 IARALVRKP++L+LDDSTSA+DA +ES + + E KG TT LI KISS + AD I Sbjct: 483 IARALVRKPSILVLDDSTSAVDAKSESNIQSALRREYKG--TTTLLIASKISSIIDADKI 540 Query: 539 LLLDEGRLIAQGTHEELMERSELYRKINESQ----HREG 573 L+LD G L+ GTHEEL+E+ E+Y++I SQ H+EG Sbjct: 541 LVLDNGELVGDGTHEELLEQCEVYQEIYLSQGGNLHKEG 579 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.134 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 638,294,684 Number of extensions: 22236665 Number of successful extensions: 156700 Number of sequences better than 1.0e-05: 16790 Number of HSP's gapped: 139863 Number of HSP's successfully gapped: 18011 Length of query: 581 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 450 Effective length of database: 401,559,609 Effective search space: 180701824050 Effective search space used: 180701824050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)