BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0006.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391108.1| similar to hypothetical proteins from B. subtil... 201 6e-51 ref|NP_653421.1| DUF64, Protein of unknown function DUF64 [Bacil... 201 9e-51 ref|NP_834626.1| Low temperature requirement C protein [Bacillus... 200 1e-50 ref|NP_981382.1| conserved hypothetical protein [Bacillus cereus... 200 2e-50 ref|NP_465921.1| low temperature requirement C protein, also sim... 189 3e-47 >ref|NP_391108.1| similar to hypothetical proteins from B. subtilis [Bacillus subtilis] sp|O32124|YUTG_BACSU Hypothetical protein yutG pir||A70024 conserved hypothetical protein yutG - Bacillus subtilis emb|CAB15218.1| yutG [Bacillus subtilis subsp. subtilis str. 168] Length = 166 Score = 201 bits (512), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 94/146 (64%), Positives = 114/146 (78%) Query: 25 LHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVLTGIQLDVLAEE 84 + +RGV + +IAELV LQKKY+P LT++EC NV VL+KREVQNA+LTGI+LDVLAE+ Sbjct: 18 MKERGVEVSDIAELVFFLQKKYHPDLTIDECTLNVNRVLAKREVQNAILTGIELDVLAEQ 77 Query: 85 GKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPGVLERLNDKSTG 144 KL PLQ M+E DESLYGVDE+LAFSIVN+YGSIGFTNYGY+DK KPG+L+RLNDKSTG Sbjct: 78 KKLSEPLQTMLEIDESLYGVDEVLAFSIVNIYGSIGFTNYGYIDKEKPGILKRLNDKSTG 137 Query: 145 QIHTYLDDXXXXXXXXXXXXXXHRKQ 170 + HT+LDD HR + Sbjct: 138 ECHTFLDDIVGAISAAASSRLAHRAR 163 >ref|NP_653421.1| DUF64, Protein of unknown function DUF64 [Bacillus anthracis A2012] ref|NP_847372.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28858.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 163 Score = 201 bits (510), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 94/158 (59%), Positives = 121/158 (76%) Query: 13 NSKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAV 72 +S ++ E L +RGVT+++IAELV LQKKY+P L M EC +NVE VLSKREVQNA+ Sbjct: 3 DSNQLQEKALQLLQERGVTIDDIAELVHFLQKKYHPNLEMSECRYNVERVLSKREVQNAL 62 Query: 73 LTGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKP 132 +TGI+LDVLAE+G L PLQ++++ DE LYG+DE++A SIVNVYGSIGFTN+GY+DKLKP Sbjct: 63 ITGIELDVLAEKGMLSEPLQDIVKRDEGLYGIDEVIALSIVNVYGSIGFTNFGYIDKLKP 122 Query: 133 GVLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHRKQ 170 G+LE LNDKSTG++HT+LDD HR + Sbjct: 123 GILEYLNDKSTGKVHTFLDDIVGGIAAAASSRLAHRAE 160 >ref|NP_834626.1| Low temperature requirement C protein [Bacillus cereus ATCC 14579] gb|AAP11827.1| Low temperature requirement C protein [Bacillus cereus ATCC 14579] Length = 163 Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/157 (59%), Positives = 120/157 (76%) Query: 14 SKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVL 73 S ++ E L +RGVT+++IAELV LQKKY+P L M EC +NVE VLSKREVQNA++ Sbjct: 4 SNQLQERALQLLQERGVTIDDIAELVHFLQKKYHPNLEMSECRYNVERVLSKREVQNALI 63 Query: 74 TGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPG 133 TGI+LDVLAE+G L PLQ++++ DE LYG+DE++A SIVNVYGSIGFTN+GY+DKLKPG Sbjct: 64 TGIELDVLAEKGMLSEPLQDIVKRDEGLYGIDEVIALSIVNVYGSIGFTNFGYIDKLKPG 123 Query: 134 VLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHRKQ 170 +LE LNDKSTG++HT+LDD HR + Sbjct: 124 ILEYLNDKSTGKVHTFLDDIVGGIAAAASSRLAHRAE 160 >ref|NP_981382.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43990.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 166 Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 94/157 (59%), Positives = 120/157 (76%) Query: 14 SKKVAEATTFWLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVL 73 S ++ E L +RGVT+++IAELV LQKKY+P L M EC +NVE VLSKREVQNA++ Sbjct: 7 SNQLQERALQLLQERGVTIDDIAELVHFLQKKYHPNLEMSECRYNVERVLSKREVQNALI 66 Query: 74 TGIQLDVLAEEGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPG 133 TGI+LDVLAE+G L PLQ++++ DE LYG+DE++A SIVNVYGSIGFTN+GY+DKLKPG Sbjct: 67 TGIELDVLAEKGMLSEPLQDIVKRDEGLYGIDEVIALSIVNVYGSIGFTNFGYIDKLKPG 126 Query: 134 VLERLNDKSTGQIHTYLDDXXXXXXXXXXXXXXHRKQ 170 +LE LNDKSTG++HT+LDD HR + Sbjct: 127 ILEYLNDKSTGKVHTFLDDIVGGIAAAASSRLAHRAE 163 >ref|NP_465921.1| low temperature requirement C protein, also similar to B. subtilis YutG protein [Listeria monocytogenes EGD-e] pir||AF1374 B. subtilis YutG protein homolog ltrC [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00476.1| low temperature requirement C protein, also similar to B. subtilis YutG protein [Listeria monocytogenes] Length = 166 Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 89/129 (68%), Positives = 108/129 (83%) Query: 24 WLHKRGVTLEEIAELVLLLQKKYYPGLTMEECVHNVEMVLSKREVQNAVLTGIQLDVLAE 83 WL +RGV +++IAELVL LQ+KY+PGL +E C NVE VL KREVQNAVLTGIQLDV+AE Sbjct: 15 WLIERGVEIDDIAELVLFLQQKYHPGLELEICRQNVEHVLRKREVQNAVLTGIQLDVMAE 74 Query: 84 EGKLLSPLQEMIENDESLYGVDEILAFSIVNVYGSIGFTNYGYVDKLKPGVLERLNDKST 143 +G+L+ PLQ +I DE LYGVDEILA SIVNVYGSIGFTNYGY+DK+KPG+L +LN+ Sbjct: 75 KGELVQPLQNIISADEGLYGVDEILALSIVNVYGSIGFTNYGYIDKVKPGILAKLNEHDG 134 Query: 144 GQIHTYLDD 152 +HT+LDD Sbjct: 135 IAVHTFLDD 143 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 263,572,949 Number of extensions: 9527598 Number of successful extensions: 19444 Number of sequences better than 1.0e-05: 25 Number of HSP's gapped: 19441 Number of HSP's successfully gapped: 25 Length of query: 201 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 81 Effective length of database: 431,425,698 Effective search space: 34945481538 Effective search space used: 34945481538 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 123 (52.0 bits)