BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0013.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_814960.1| ABC transporter, permease protein [Enterococcus... 254 2e-66 ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans... 237 2e-61 ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans]... 231 1e-59 ref|NP_764660.1| maltose/maltodextrin transport permease [Staphy... 219 6e-56 ref|NP_388593.1| transmembrane lipoprotein [Bacillus subtilis] >... 219 6e-56 >ref|NP_814960.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81030.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 293 Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/292 (41%), Positives = 194/292 (66%), Gaps = 1/292 (0%) Query: 4 LKRKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKN 63 +KRK+K F N LI++ L + PIW +LV++ + + G+ WP+ F+L+N Sbjct: 2 IKRKSKENKWFYFFNTLILVLFSLLIIVPIWNILVSSVSSSSGLAGKGLVLWPKGFTLEN 61 Query: 64 FDAVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFF 123 + VF+ I +A ++V KTV+G H F A+VAY LS+ L+G Y +G IT++F Sbjct: 62 YRKVFSDSSIPRAFLISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMYF 121 Query: 124 NGGLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDW 183 GG+IPT+LL + L LLD F VYIIP +FS++D++I M FFREIP LEE+A+IDGA+++ Sbjct: 122 GGGMIPTYLLIKSLGLLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASEF 181 Query: 184 SIFLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYVNNPDLQPIQTYLFRVVAQSSSNQ 243 IF ++ LP++ P +ATI LF+GV QWND+ +Y+ L P+Q ++ ++ QS+ + Sbjct: 182 QIFYKIFLPLTKPALATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQSNLST 241 Query: 244 MMVAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIK 295 M + + + T++ ++LAT+V+TT+PI+ +YP LQ++F+ GMM G++K Sbjct: 242 MTES-GSTDMVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVK 292 >ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans] pir||A83914 ABC transporter (permease) BH2113 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05832.1| ABC transporter (permease) [Bacillus halodurans] Length = 308 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/301 (40%), Positives = 191/301 (63%), Gaps = 7/301 (2%) Query: 3 ALKRKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLK 62 A KR+ + +FD N + ML +C + LYP+ L + ND D ++GGIY+WPR F+ Sbjct: 8 AGKRRGADDFIFDSLNIIFMLLLCVVMLYPMVNTLAVSLNDATDTVRGGIYFWPREFTWY 67 Query: 63 NFDAVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLF 122 NF+ VF+ ++ A ++V +TV+G + VF TAMVAY +SRK + KF + +T++ Sbjct: 68 NFEHVFSQSQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKKFVTIAFVLTMY 127 Query: 123 FNGGLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGAND 182 NGGLIPT+LL R+L L+ F +YIIP + F+LI+ +F +PE + E+A+IDGA + Sbjct: 128 LNGGLIPTYLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETIFESAKIDGAGE 187 Query: 183 WSIFLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIY-VNNPDLQPIQTYLFRVVAQ--- 238 ++ F ++ LP+ +PVIAT++LF V QWN +F IY N P+L +Q L +++ Sbjct: 188 FTQFFKIALPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQYELMKILQNSNA 247 Query: 239 ---SSSNQMMVAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIK 295 S S A S + ++VT QS++ A ++ ++PI+ VYPFLQ+YFVKG+ +G +K Sbjct: 248 SMSSGSAASAFASSQSGVVETVTPQSVRAAMTIIVSVPIICVYPFLQKYFVKGLTLGGVK 307 Query: 296 G 296 G Sbjct: 308 G 308 >ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83888 transmembrane lipoprotein lplC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05631.1| transmembrane lipoprotein [Bacillus halodurans] Length = 297 Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 187/292 (64%), Gaps = 5/292 (1%) Query: 10 GEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKNFDAVFA 69 G+ LFD N L + V +TLYP VL + ND D ++GGIY WPR F+L+N+ +F Sbjct: 6 GDRLFDWCNYLFLTMVLLVTLYPFLNVLAISLNDSVDTVRGGIYIWPREFTLENYRVIFE 65 Query: 70 SPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFFNGGLIP 129 ++ +V +TV+G + VF +AMVA+ LSR KF + +TL+F+GGLIP Sbjct: 66 YDHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSGGLIP 125 Query: 130 TFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDWSIFLRV 189 ++L R+L+L++ F VY++P M + F +II +F +P L+E+A+IDGAND++IF R+ Sbjct: 126 GYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTIFWRI 185 Query: 190 VLPVSMPVIATIALFHGVYQWNDYFAGIIY-VNNPDLQPIQTYLFRVVAQS----SSNQM 244 +LP+ PV+ATIALF V QWN +F +Y +NP+L +Q L +++ + S Sbjct: 186 ILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMSASDANA 245 Query: 245 MVAVQGSSLTKSVTSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIKG 296 G +++V+ +SIK+A ++T +PI+ VYPF+QR+FVKGM +G++K Sbjct: 246 FRGTSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVKS 297 >ref|NP_764660.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] gb|AAO04702.1| maltose/maltodextrin transport permease [Staphylococcus epidermidis ATCC 12228] Length = 302 Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 108/268 (40%), Positives = 176/268 (65%), Gaps = 4/268 (1%) Query: 32 PIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKNFDAVFASPGIMQAMGVTVAKTVLGVFVH 91 P+ + AFN G DA +GGI ++PR FSL NF +F ++ A+ +++AKTV+G + Sbjct: 34 PMINIFALAFNSGVDAQKGGITFYPRKFSLDNFKEIFKQGTLLNALFISIAKTVIGTILS 93 Query: 92 VFFTAMVAYALSRKGLIGGKFYILLGTITLFFNGGLIPTFLLNRDLHLLDNFLVYIIPVM 151 V TAM AY L+ K L + T+ F+ G++P ++L LHL D F VYI+P + Sbjct: 94 VILTAMAAYVLTIKSLPFRRIISFFLVFTMLFSVGVVPLYILLNQLHLTDTFWVYILPSL 153 Query: 152 FSFFDLIIFMTFFREIPEGLEEAARIDGANDWSIFLRVVLPVSMPVIATIALFHGVYQWN 211 +S ++++I TFF ++P + EAAR+DG ND+ IF ++VLP+S PV+A+I LF+ V QWN Sbjct: 154 YSVYNILIMRTFFNQLPSSVIEAARVDGCNDFQIFWKIVLPMSKPVVASITLFNAVSQWN 213 Query: 212 DYFAGIIYVNNPDLQPIQTYLFRVVAQSSSNQMMVAVQGSS---LTK-SVTSQSIKLATM 267 D+F G +V NP+L+P+ T L ++ + ++ + + S L K ++T S+++A + Sbjct: 214 DWFTGAFFVRNPNLKPLATVLQDMLTKQAAIADALKQKSGSYAMLDKLTITGDSMQMAMI 273 Query: 268 VVTTLPIVFVYPFLQRYFVKGMMIGSIK 295 V+ T+P++F++PF+Q++FVKG+ IGS K Sbjct: 274 VLLTIPVLFLFPFVQKHFVKGITIGSTK 301 >ref|NP_388593.1| transmembrane lipoprotein [Bacillus subtilis] sp|P39129|LPLC_BACSU LplC protein pir||B69653 transmembrane lipoprotein lplC - Bacillus subtilis gb|AAA22576.1| transmembrane protein emb|CAB12531.1| transmembrane lipoprotein [Bacillus subtilis subsp. subtilis str. 168] Length = 295 Score = 219 bits (558), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 183/292 (62%), Gaps = 5/292 (1%) Query: 6 RKTKGEALFDIANNLIMLCVCFLTLYPIWYVLVNAFNDGNDAMQGGIYWWPRVFSLKNFD 65 TK +FD+ N L + V +T+ P Y++ +F + Q + +P+ F+L + Sbjct: 8 HNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYK 67 Query: 66 AVFASPGIMQAMGVTVAKTVLGVFVHVFFTAMVAYALSRKGLIGGKFYILLGTITLFFNG 125 VF++P +++MGV++ TV+G V +FFT +AY L+++ + G + L ++ F+G Sbjct: 68 YVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSG 127 Query: 126 GLIPTFLLNRDLHLLDNFLVYIIPVMFSFFDLIIFMTFFREIPEGLEEAARIDGANDWSI 185 G+IPT+L+ + L LLD + I+P+ + F+LII FF+++P LEE+A+IDG ++ + Sbjct: 128 GMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGV 187 Query: 186 FLRVVLPVSMPVIATIALFHGVYQWNDYFAGIIYVNNPDLQPIQTYLFRVVAQSSSNQMM 245 F R+ LP+S PVIAT ALF+ V WND+F ++Y+N+ P+Q L +V S + Sbjct: 188 FWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSD----L 243 Query: 246 VAVQGSSLTKSV-TSQSIKLATMVVTTLPIVFVYPFLQRYFVKGMMIGSIKG 296 A G ++ +V Q IKLA +V+ TLPI+ VYPFLQ++F KGM+IGS+KG Sbjct: 244 TATNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.144 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 413,019,921 Number of extensions: 16943852 Number of successful extensions: 67546 Number of sequences better than 1.0e-05: 1255 Number of HSP's gapped: 66139 Number of HSP's successfully gapped: 1255 Length of query: 296 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 171 Effective length of database: 417,850,203 Effective search space: 71452384713 Effective search space used: 71452384713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)