BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0001.p (184 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244187.1| NADH-dependent FMN reductase [Bacillus halodura... 186 2e-46 ref|ZP_00158774.1| hypothetical protein Avar447501 [Anabaena var... 181 6e-45 ref|ZP_00111003.1| COG0431: Predicted flavoprotein [Nostoc punct... 179 3e-44 gb|EAG60747.1| unknown [environmental sequence] 156 2e-37 ref|NP_925711.1| NADH-dependent FMN reductase [Gloeobacter viola... 155 4e-37 >ref|NP_244187.1| NADH-dependent FMN reductase [Bacillus halodurans] pir||A84065 NADH-dependent FMN reductase ssuE [imported] - Bacillus halodurans (strain C-125) dbj|BAB07040.1| NADH-dependent FMN reductase [Bacillus halodurans] Length = 178 Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/172 (52%), Positives = 121/172 (70%), Gaps = 2/172 (1%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 M K+V I G+P++ SR + + Y E LR G +VE I V +LP EDL+H F+SE + + Sbjct: 1 MKKVVSIVGSPAITSRTSILTRYVEKALREAGVDVETIYVRDLPPEDLLHVNFQSEPLKR 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 + +VA AD VIV SPVYKASYTG+LKT+LDL+P+ GL K +LPL GG+ HLL I+Y Sbjct: 61 THSMVAAADGVIVASPVYKASYTGILKTYLDLLPQDGLRNKAVLPLMSGGTFGHLLAIDY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQ--GAVELADELRLRLDSVLAEL 170 +KPVL+ LGARHILGGVYA+D+Q D+ G +A+E++LRLD +L Sbjct: 121 GMKPVLNSLGARHILGGVYALDTQLEWQDKDAGTFRIAEEIKLRLDKATKDL 172 >ref|ZP_00158774.1| hypothetical protein Avar447501 [Anabaena variabilis ATCC 29413] Length = 188 Score = 181 bits (460), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 88/178 (49%), Positives = 125/178 (70%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 MA+I+ I G+PS SR ++E+ L+ G V+ ++V +LPAEDL+ K++S A+ + Sbjct: 1 MARILAIAGSPSHPSRTYGILEHTAKLLQEEGLHVDILSVRDLPAEDLVFGKYDSPALEQ 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 L+A+AD VI+ +P+YKA+YTGVLK FLDL+P+K L GK++LP+ GG++AHLL++EY Sbjct: 61 PKDLLAKADGVIIATPIYKAAYTGVLKAFLDLLPQKSLTGKVVLPIATGGTIAHLLSVEY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQGAVELADELRLRLDSVLAELAEETSHKA 178 ALKP+L LGARHIL VYAVD Q R G+V+L E+ RL VL +L + H A Sbjct: 121 ALKPILGELGARHILATVYAVDKQIERQTDGSVQLDAEIDQRLKEVLKDLVKSVKHSA 178 >ref|ZP_00111003.1| COG0431: Predicted flavoprotein [Nostoc punctiforme] Length = 188 Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 89/179 (49%), Positives = 123/179 (68%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVK 60 M I+ I G+P+ SR ++EY L+ G ++ I+V +LPAEDL+ +++S A+ + Sbjct: 1 MTNILAIAGSPTHPSRTYGLVEYTAKLLQQEGLHIDIISVRDLPAEDLVFGRYDSPALEQ 60 Query: 61 ANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEY 120 L+A+AD VI+ +P+YKA+YTGVLKTFLDL+P+K L GK +LP+ +GG++AHLL IEY Sbjct: 61 PKALLAKADGVIIATPIYKAAYTGVLKTFLDLLPQKSLTGKPVLPIALGGTIAHLLAIEY 120 Query: 121 ALKPVLSVLGARHILGGVYAVDSQAVRNDQGAVELADELRLRLDSVLAELAEETSHKAA 179 ALKPVLS LGARHIL VYAVD Q R +V L E+ RL VL E + ++ AA Sbjct: 121 ALKPVLSELGARHILATVYAVDKQIQRQADNSVLLDQEIEQRLTDVLKEFVKAVAYDAA 179 >gb|EAG60747.1| unknown [environmental sequence] Length = 197 Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/168 (46%), Positives = 113/168 (67%), Gaps = 1/168 (0%) Query: 4 IVVINGTPSLVSRVNAVIEYAEANLRGRGFEVERINVAELPAEDLIHTKFESEAIVKANG 63 +V+++G+P+ SR +++Y L + EV + V + PAEDL+H +F+S A+ + Sbjct: 3 VVLLSGSPAARSRTEVLLDYVRQRLEAQQVEVSLLRVRDFPAEDLLHARFDSPAVQQLQA 62 Query: 64 LVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIEYALK 123 +VA AD ++V +PVYKAS+TG LK LDL+PE+ LA K++LPL GGS AHLL ++YALK Sbjct: 63 VVASADGLVVGTPVYKASFTGALKVLLDLLPERALAHKVVLPLASGGSPAHLLAVDYALK 122 Query: 124 PVLSVLGARHILGGVYAVDSQ-AVRNDQGAVELADELRLRLDSVLAEL 170 PVL+ L A+ +L GV+AVD Q A ++ DELR RLD L +L Sbjct: 123 PVLAALKAQEMLSGVFAVDKQIAYPEGDRPAQIDDELRERLDEALEQL 170 >ref|NP_925711.1| NADH-dependent FMN reductase [Gloeobacter violaceus] dbj|BAC90706.1| NADH-dependent FMN reductase [Gloeobacter violaceus PCC 7421] Length = 175 Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 3/173 (1%) Query: 1 MAKIVVINGTPSLVSRVNAVIEYAEANLRGR-GFEVERINVAELPAEDLIHTKFESEAIV 59 MA+I+ ++G+PS SR ++++EYA L G +V V +LP E L+ +F+S A+ Sbjct: 1 MARILAVSGSPSHPSRTHSLVEYAVGLLPPEVGADV--FAVRDLPPEVLVFARFDSPALD 58 Query: 60 KANGLVAEADAVIVVSPVYKASYTGVLKTFLDLIPEKGLAGKILLPLFMGGSLAHLLTIE 119 L+ +AD +I+ +P+YKA+YTG+LK+FLDL+P+K L GK +LP+ GG++AHLL I+ Sbjct: 59 GPKALLEKADGLIIATPIYKAAYTGLLKSFLDLLPQKALLGKAVLPIATGGTIAHLLAID 118 Query: 120 YALKPVLSVLGARHILGGVYAVDSQAVRNDQGAVELADELRLRLDSVLAELAE 172 YALKPVL LGARH+LGGVYAVD Q R G+ L +E+ RL + +L + Sbjct: 119 YALKPVLCELGARHLLGGVYAVDKQIQRQADGSTVLDEEIDQRLKHSVGDLVK 171 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 238,423,113 Number of extensions: 9422388 Number of successful extensions: 28534 Number of sequences better than 1.0e-05: 65 Number of HSP's gapped: 28554 Number of HSP's successfully gapped: 65 Length of query: 184 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 66 Effective length of database: 436,855,896 Effective search space: 28832489136 Effective search space used: 28832489136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)