BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0005.p (591 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Baci... 463 e-129 ref|NP_976348.1| DNA polymerase III, gamma and tau subunits [Bac... 447 e-124 ref|NP_653973.1| AAA, ATPase family associated with various cell... 446 e-124 ref|NP_829926.1| DNA polymerase III subunit gamma/tau [Bacillus ... 442 e-123 ref|NP_387900.1| DNA polymerase III (gamma and tau subunits) [Ba... 420 e-116 >ref|NP_240900.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans] pir||B83654 DNA polymerase III gamma and tau subunits dnaX [imported] - Bacillus halodurans (strain C-125) dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans] Length = 564 Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust. Identities = 248/594 (41%), Positives = 355/594 (59%), Gaps = 41/594 (6%) Query: 5 ALYRAWRPQSFHDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNC 64 ALYR WRPQ D+VGQ+HI +TLQNA+ +++ SHAYLFSGPRGTGKTSAAK++AKA+NC Sbjct: 5 ALYRVWRPQKLQDVVGQEHITKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAINC 64 Query: 65 ERSEGAEPCNECPSCLRITAGNVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYI 124 E++ AEPCNEC +C IT+G+++DV EIDAASN GV+EIRD+RD VK+AP+EVR KVYI Sbjct: 65 EQAPIAEPCNECRACKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFAPSEVRYKVYI 124 Query: 125 IDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQT 184 IDEVHMLTT AFNALLKTLEEPP H +FILATTEPHK+P TIISRCQRFDF+R+S + Sbjct: 125 IDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQRFDFKRISNDALV 184 Query: 185 AHLTAICQKEGISADSDALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGI 244 + I EGI A+ +AL +AR ++GGMRD+LS+LDQ SF D +VT + VL +TG + Sbjct: 185 GRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFADERVTVEDVLAITGAV 244 Query: 245 PSEQFARLATAILEGDMGLLLELVEQLMHEGKSADKCLENLLYYFRDLLMIKMVPGADQL 304 E ++ + +G+ L+LV QL+ GK + +E+L+YY+RDL++ K P A QL Sbjct: 245 SHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLMLFKAAPEASQL 304 Query: 305 TDRVLNPADFRDMAAAFTRDRLFLIVETLTRYLGEMKYATHPQTLFEVALMKLCSLQQQE 364 +R F+ +A LF +E L M++++HP+ E+ ++ LC QQ Sbjct: 305 LERAQINDSFKTLAGEINDASLFAAIEILNDCQQRMRWSSHPRVALELGVVTLC--QQVV 362 Query: 365 GSPHGTTPQA-ASSHVVGGNAAAVDSGELEHLKRQIAALEKKLEQAMQSGAMSXXXXXXX 423 P +PQA A++H +E L+ +I LE+ ++ +G + Sbjct: 363 QVP--ASPQAGAATH-----------PNVEALQERIQQLEQAVQSLKVNGVANVTAEEPK 409 Query: 424 XXXXXXPAQAPAPRVSSPSKLPPQLDKFIAGKDSPDFAEVYKKWSVVLQGVKEEKVTVHA 483 P+ +P+ ++ + + V +W V++ VK + V HA Sbjct: 410 TKQASRRPLKQMPKSQAPTG---KIKELLKEASKQQLQLVNGRWGEVMERVKAQNVPAHA 466 Query: 484 WFVDGEPVAVMEDAVLVAFKNTIHR---DTTEKPANRQVIENVFAARLGKPYRLVTMMLR 540 W +D +P A +L+AF+N +HR DT +P V+ ++F A P T++ Sbjct: 467 WLMDCKPAAASPKFILLAFQNEMHRDMIDTKFRPFIESVLRDIFQA----PLDFQTLLQS 522 Query: 541 DWNEAATKTAAXXXXXXXXXXXXXXTGDTR---TEPWIDEAIQLFGEDLVVIKE 591 WN+ + GD ++P I+EAI+L G DL+ +K+ Sbjct: 523 QWNKVKEEYV------------RDQRGDGEEPSSDPLIEEAIKLVGSDLIEVKD 564 >ref|NP_976348.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC 10987] gb|AAS38956.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus ATCC 10987] Length = 562 Score = 447 bits (1149), Expect = e-124, Method: Compositional matrix adjust. Identities = 233/590 (39%), Positives = 348/590 (58%), Gaps = 35/590 (5%) Query: 5 ALYRAWRPQSFHDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNC 64 ALYR WRPQ F D+VGQ+H+ +TLQNA+ +++VSHAYLFSGPRGTGKT+ AKV AKA+NC Sbjct: 5 ALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC 64 Query: 65 ERSEGAEPCNECPSCLRITAGNVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYI 124 E + AEPCNECPSCL IT G++ DV EIDAASN GV+EIRD+RDKVKYAP+ V KVYI Sbjct: 65 EHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYI 124 Query: 125 IDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQT 184 IDEVHML+ AFNALLKTLEEPP HV+FILATTEPHK+P TIISRCQRF+FR++S+ + Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIV 184 Query: 185 AHLTAICQKEGISADSDALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGI 244 L+ + EG + +ALQ +AR ++GGMRDALS++DQ S++D VT + VL +TG + Sbjct: 185 ERLSTVVNNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVTGSV 244 Query: 245 PSEQFARLATAILEGDMGLLLELVEQLMHEGKSADKCLENLLYYFRDLLMIKMVPGADQL 304 + L I E D+ L +++++M +GK + +E+ +YY+RD+L+ + P + + Sbjct: 245 SQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHM 304 Query: 305 TDRVLNPADFRDMAAAFTRDRLFLIVETLTRYLGEMKYATHPQTLFEVALMKLCSLQQQE 364 +RV+ FR ++ + ++ I+ TL++ EMK+ HP+ EV +++LC Sbjct: 305 LERVMVDEQFRTLSEEMQPEVIYEIIHTLSKAQQEMKWTNHPRIFLEVVMVQLC------ 358 Query: 365 GSPHGTTPQAASSHVVGGNAAAVDSGELEHLKRQIAALEKKLEQAMQSGAMSXXXXXXXX 424 ++ N A L+ + ++ LEK+LEQ ++G + Sbjct: 359 -----------QQFMMQANGA----DRLQAIMNRMQQLEKELEQVKKNGVPAGVQQEVRE 403 Query: 425 XXXXXPAQAPAPRVSSPSKLP-PQLDKFIAGKDSPDFAEVYKKWSVVLQGVKE-EKVTVH 482 AP P + K+P ++++ + D ++ W +L +K KV Sbjct: 404 TRA-----APKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKAYNKVAFA 458 Query: 483 AWFVDGEPVAVMEDAVLVAFKNTIH-RDTTEKPANRQVIENVFAARLGKPYRLVTMMLRD 541 + EPVA +D ++AF+ IH + +E +E L K ++ + + Sbjct: 459 VLLENSEPVAASDDTYVLAFQYEIHCKMASENREAMDTVEQTLFELLSKRLNMIAIPKSE 518 Query: 542 WNEAATKTAAXXXXXXXXXXXXXXTGDTRTEPWIDEAIQLFGEDLVVIKE 591 W + + + + +P I+EA++L G++L+ IKE Sbjct: 519 WGK------IREDFLQREGGSSEESPEKKEDPLIEEAVKLVGQELIEIKE 562 >ref|NP_653973.1| AAA, ATPase family associated with various cellular activities (AAA) [Bacillus anthracis A2012] ref|NP_842590.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. Ames] gb|AAP24076.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str. Ames] Length = 562 Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/590 (39%), Positives = 348/590 (58%), Gaps = 35/590 (5%) Query: 5 ALYRAWRPQSFHDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNC 64 ALYR WRPQ F D+VGQ+H+ +TLQNA+ +++VSHAYLFSGPRGTGKT+ AKV AKA+NC Sbjct: 5 ALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC 64 Query: 65 ERSEGAEPCNECPSCLRITAGNVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYI 124 E + AEPCNECPSCL IT G++ DV EIDAASN GV+EIRD+RDKVKYAP+ V KVYI Sbjct: 65 EHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYI 124 Query: 125 IDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQT 184 IDEVHML+ AFNALLKTLEEPP HV+FILATTEPHK+P TIISRCQRF+FR++S+ + Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIV 184 Query: 185 AHLTAICQKEGISADSDALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGI 244 L+ + EG + +ALQ +AR ++GGMRDALS++DQ S++D +VT + VL +TG + Sbjct: 185 ERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTGSV 244 Query: 245 PSEQFARLATAILEGDMGLLLELVEQLMHEGKSADKCLENLLYYFRDLLMIKMVPGADQL 304 + L I E D+ L +++++M +GK + +E+ +YY+RD+L+ + P + + Sbjct: 245 SQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHM 304 Query: 305 TDRVLNPADFRDMAAAFTRDRLFLIVETLTRYLGEMKYATHPQTLFEVALMKLCSLQQQE 364 +RV+ FR ++ + ++ I+ TL++ EMK+ HP+ EV +++LC Sbjct: 305 LERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC------ 358 Query: 365 GSPHGTTPQAASSHVVGGNAAAVDSGELEHLKRQIAALEKKLEQAMQSGAMSXXXXXXXX 424 ++ N A L+ + ++ LEK+LEQ ++G Sbjct: 359 -----------QQFMMQANGA----DRLQAIMNRMQQLEKELEQVKKNGV-----PVGVQ 398 Query: 425 XXXXXPAQAPAPRVSSPSKLP-PQLDKFIAGKDSPDFAEVYKKWSVVLQGVKE-EKVTVH 482 AP P + K+P ++++ + D ++ W +L +K KV Sbjct: 399 QEVKETRAAPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKAYNKVAFA 458 Query: 483 AWFVDGEPVAVMEDAVLVAFKNTIH-RDTTEKPANRQVIENVFAARLGKPYRLVTMMLRD 541 + EPVA +D ++AF+ IH + +E +E L K ++ + + Sbjct: 459 VLLENSEPVAASDDTYVLAFQYEIHCKMASENREAMDTVEQALFELLSKKLNMIAIPKSE 518 Query: 542 WNEAATKTAAXXXXXXXXXXXXXXTGDTRTEPWIDEAIQLFGEDLVVIKE 591 W + + + + +P I+EAI+L G++L+ IKE Sbjct: 519 WGK------IREDFLKREGGSSEESPEKKEDPLIEEAIKLVGQELIEIKE 562 >ref|NP_829926.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 14579] gb|AAP07127.1| DNA polymerase III subunit gamma/tau [Bacillus cereus ATCC 14579] Length = 562 Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust. Identities = 234/590 (39%), Positives = 349/590 (59%), Gaps = 35/590 (5%) Query: 5 ALYRAWRPQSFHDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNC 64 ALYR WRPQ F D+VGQ+H+ +TLQNA+ +++VSHAYLFSGPRGTGKT+ AKV AKA+NC Sbjct: 5 ALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC 64 Query: 65 ERSEGAEPCNECPSCLRITAGNVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYI 124 E + AEPCNECPSCL IT G++ DV EIDAASN GV+EIRD+RDKVKYAP+ V KVYI Sbjct: 65 EHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYI 124 Query: 125 IDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQT 184 IDEVHML+ AFNALLKTLEEPP HV+FILATTEPHK+P TIISRCQRF+FR++S+ + Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIV 184 Query: 185 AHLTAICQKEGISADSDALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGI 244 L+ + EG + +ALQ +AR ++GGMRDALS++DQ S++D VT + VL +TG + Sbjct: 185 ERLSTVVTNEGTQVEGEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVTGSV 244 Query: 245 PSEQFARLATAILEGDMGLLLELVEQLMHEGKSADKCLENLLYYFRDLLMIKMVPGADQL 304 + L I E D+ L++++++M +GK + +E+ +YY+RD+L+ + P + + Sbjct: 245 SQQYLGNLVECIRENDVSRALQIIDEMMSKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHM 304 Query: 305 TDRVLNPADFRDMAAAFTRDRLFLIVETLTRYLGEMKYATHPQTLFEVALMKLCSLQQQE 364 +RV+ FR ++ + ++ I+ TL++ EMK+ HP+ EV +++LC QQ Sbjct: 305 LERVIVDDQFRKLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC--QQFM 362 Query: 365 GSPHGTTPQAASSHVVGGNAAAVDSGELEHLKRQIAALEKKLEQAMQSGAMSXXXXXXXX 424 +GT L+ + ++ LEK+LEQ ++G + Sbjct: 363 MQANGT-------------------DRLQAIMNRMQQLEKELEQVKKNGVPAGVQQEVRE 403 Query: 425 XXXXXPAQAPAPRVSSPSKLP-PQLDKFIAGKDSPDFAEVYKKWSVVLQGVKE-EKVTVH 482 P P + K+P ++++ + D ++ W +L +K KV Sbjct: 404 TRA-----TPKPVRTGSMKIPVGRVNEVLKQAKRQDLEQLKAVWGELLGRLKSYNKVAFA 458 Query: 483 AWFVDGEPVAVMEDAVLVAFKNTIH-RDTTEKPANRQVIENVFAARLGKPYRLVTMMLRD 541 + EPVA +D ++AF+ IH + +E +E L K ++ + + Sbjct: 459 VLLENSEPVAASDDTYVLAFQYEIHCKMASENREAMDTVEQALFELLSKRLNMIAIPKSE 518 Query: 542 WNEAATKTAAXXXXXXXXXXXXXXTGDTRTEPWIDEAIQLFGEDLVVIKE 591 W + + + + +P I+EA++L G++L+ IKE Sbjct: 519 WGK------IREDFLQREGGESEESSEKKEDPLIEEAVKLVGQELIEIKE 562 >ref|NP_387900.1| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis] pir||S13786 DNA-directed DNA polymerase (EC 2.7.7.7) III chain dnaX - Bacillus subtilis dbj|BAA05255.1| DNA polymerase III subunit [Bacillus subtilis] emb|CAA34877.1| dnaZX [Bacillus subtilis] emb|CAB11795.1| DNA polymerase III (gamma and tau subunits) [Bacillus subtilis subsp. subtilis str. 168] Length = 563 Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust. Identities = 235/598 (39%), Positives = 342/598 (57%), Gaps = 50/598 (8%) Query: 5 ALYRAWRPQSFHDMVGQQHIIQTLQNAIREQRVSHAYLFSGPRGTGKTSAAKVLAKAVNC 64 ALYR +RPQ F D+VGQ+HI +TLQNA+ +++ SHAYLFSGPRGTGKTSAAK+ AKAVNC Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64 Query: 65 ERSEGAEPCNECPSCLRITAGNVMDVQEIDAASNRGVEEIRDLRDKVKYAPTEVRRKVYI 124 E + EPCNEC +C IT G++ DV EIDAASN GV+EIRD+RDKVK+AP+ V KVYI Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124 Query: 125 IDEVHMLTTEAFNALLKTLEEPPPHVMFILATTEPHKLPATIISRCQRFDFRRVSLEEQT 184 IDEVHML+ AFNALLKTLEEPP H +FILATTEPHK+P TIISRCQRFDF+R++ + Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184 Query: 185 AHLTAICQKEGISADSDALQYIARLSDGGMRDALSILDQISSFTDGQVTYQQVLGMTGGI 244 + I E + + +L+ IA +DGGMRDALS+LDQ SF+ + + L +TG + Sbjct: 185 GRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244 Query: 245 PSEQFARLATAILEGDMGLLLELVEQLMHEGKSADKCLENLLYYFRDLLMIKMVPGADQL 304 +LA ++ + ++ LE + +L+ +GK K +E++++YFRD+L+ K PG + + Sbjct: 245 SQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304 Query: 305 TDRVLNPADFRDMAAAFTRDRLFLIVETLTRYLGEMKYATHPQTLFEVALMKLCSLQQQE 364 ++V FR+++ L+ +++ L + EMK+ HP+ FEVA++K+C Q Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKICQTSHQ- 363 Query: 365 GSPHGTTPQAASSHVVGGNAAAVDSGELEHLKRQIAALEKKLEQAMQSGAMSXXXXXXXX 424 +A D E++ L ++I LE+++E+ +G + Sbjct: 364 --------------------SAADLPEVDMLMKKIQQLEQEVERLKTTGIKAA------- 396 Query: 425 XXXXXPAQAP---APRV----SSPSKLP-PQLDKFIAGKDSPDFAEVYKKWSVVLQGVKE 476 A++P APRV S K P ++ + + PD + W +L +K+ Sbjct: 397 ------AESPKKEAPRVPKGGKSNYKAPVGRIHEILKEATRPDLDLLRNSWGKLLAHLKQ 450 Query: 477 EKVTVHAWFV-DGEPVAVMEDAVLVAFKNTIHRDTTEKPAN--RQVIENVFAARLGKPYR 533 + HA + D EPVA A ++ FK IH + N R +E + + LGK Sbjct: 451 QNKVSHAALLNDSEPVAAGSAAFVLKFKYEIHCKMVAEDNNGVRTNLEQILESMLGKRMD 510 Query: 534 LVTMMLRDWNEAATKTAAXXXXXXXXXXXXXXTGDTRTEPWIDEAIQLFGEDLVVIKE 591 L+ + W + + +P I EA +L G DL+ IK+ Sbjct: 511 LIGVPEAQWGKIREE-----FLEDHQQANEGSNEPAEEDPLIAEAKKLVGADLIEIKD 563 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.132 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 792,133,312 Number of extensions: 30604187 Number of successful extensions: 100050 Number of sequences better than 1.0e-05: 1193 Number of HSP's gapped: 99401 Number of HSP's successfully gapped: 1197 Length of query: 591 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 460 Effective length of database: 401,559,609 Effective search space: 184717420140 Effective search space used: 184717420140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)