BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0002.p
         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_391588.1| ribosomal protein L31 [Bacillus subtilis] >gi|4...    97   2e-19
ref|NP_281366.1| 50S ribosomal protein L31 [Campylobacter jejuni...    95   5e-19
ref|NP_954148.1| ribosomal protein L31 [Geobacter sulfurreducens...    95   6e-19
ref|NP_563121.1| 50S ribosomal protein L31 [Clostridium perfring...    94   7e-19
ref|ZP_00081950.1| COG0254: Ribosomal protein L31 [Geobacter met...    94   8e-19

>ref|NP_391588.1| ribosomal protein L31 [Bacillus subtilis]
 sp|Q03223|RL31_BACSU 50S ribosomal protein L31
 pir||S55431 ribosomal protein L31 - Bacillus subtilis
 gb|AAA02901.1| ribosomal protein L31
 emb|CAA89878.1| ribosomal protein L31 [Bacillus subtilis]
 emb|CAB15724.1| ribosomal protein L31 [Bacillus subtilis subsp. subtilis str.
          168]
          Length = 66

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 50/65 (76%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M++ I P +    V CACGN FETGSVK E+RVEICS CHPF+TG+QKF  A GRVD+F 
Sbjct: 1  MKAGIHPNFKKATVKCACGNEFETGSVKEEVRVEICSECHPFYTGRQKFASADGRVDRFN 60

Query: 61 KKYGI 65
          KKYG+
Sbjct: 61 KKYGL 65


>ref|NP_281366.1| 50S ribosomal protein L31 [Campylobacter jejuni subsp. jejuni
          NCTC 11168]
 sp|Q9PIX2|RL31_CAMJE 50S ribosomal protein L31
 pir||C81433 50S ribosomal protein L31 Cj0155c [imported] - Campylobacter
          jejuni (strain NCTC 11168)
 emb|CAB72639.1| 50S ribosomal protein L31 [Campylobacter jejuni subsp. jejuni
          NCTC 11168]
          Length = 66

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 52/65 (80%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I P+Y   KV+CACGNTF T S KAELRV+ICS+CHPFFTG +K +DA GRV+KFK
Sbjct: 1  MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFTGSEKIVDAAGRVEKFK 60

Query: 61 KKYGI 65
          KKY +
Sbjct: 61 KKYAM 65


>ref|NP_954148.1| ribosomal protein L31 [Geobacter sulfurreducens PCA]
 gb|AAR36498.1| ribosomal protein L31 [Geobacter sulfurreducens PCA]
          Length = 65

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 50/65 (76%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I PKYN   V CACGN+F+T S K E+  EICS+CHPFFTGKQK +D  GRV++F+
Sbjct: 1  MKEGIHPKYNDVMVKCACGNSFQTRSTKTEISTEICSACHPFFTGKQKLIDTAGRVERFR 60

Query: 61 KKYGI 65
          KKYG+
Sbjct: 61 KKYGM 65


>ref|NP_563121.1| 50S ribosomal protein L31 [Clostridium perfringens]
 sp|Q8XIB6|RL31_CLOPE 50S ribosomal protein L31
 dbj|BAB81911.1| 50S ribosomal protein L31 [Clostridium perfringens str. 13]
          Length = 68

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 52/66 (78%), Gaps = 1/66 (1%)

Query: 1  MQSAIQPKYNV-TKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKF 59
          M+  I P+Y+  T V CACGNTF TGSVK EL+VEICS CHPFFTGKQK +D GGRVDKF
Sbjct: 1  MRQGIHPEYHHDTVVKCACGNTFTTGSVKPELKVEICSKCHPFFTGKQKIVDVGGRVDKF 60

Query: 60 KKKYGI 65
           K++ +
Sbjct: 61 NKRFNL 66


>ref|ZP_00081950.1| COG0254: Ribosomal protein L31 [Geobacter metallireducens]
          Length = 66

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 50/65 (76%)

Query: 1  MQSAIQPKYNVTKVTCACGNTFETGSVKAELRVEICSSCHPFFTGKQKFMDAGGRVDKFK 60
          M+  I PKYN   V CACGN+F+T S + E+  EICS+CHPFFTGKQK +D  GRV++F+
Sbjct: 1  MKEGIHPKYNEVTVKCACGNSFQTRSTRTEISTEICSACHPFFTGKQKLVDTAGRVERFR 60

Query: 61 KKYGI 65
          KKYG+
Sbjct: 61 KKYGM 65


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 101,031,991
Number of extensions: 3194321
Number of successful extensions: 5687
Number of sequences better than 1.0e-05: 203
Number of HSP's gapped: 5746
Number of HSP's successfully gapped: 203
Length of query: 65
Length of database: 757,237,578
Length adjustment: 36
Effective length of query: 29
Effective length of database: 659,494,014
Effective search space: 19125326406
Effective search space used: 19125326406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)