BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0016.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_357053.1| AGR_L_2541p [Agrobacterium tumefaciens] >gi|179... 89 2e-16 ref|ZP_00069763.1| COG0438: Glycosyltransferase [Oenococcus oeni... 82 2e-14 gb|AAN64562.1| glycosyltransferase [Streptococcus gordonii] 80 9e-14 gb|EAA93992.1| unknown [environmental sequence] 79 2e-13 ref|NP_932014.1| WalN protein [Photorhabdus luminescens subsp. l... 77 6e-13 >ref|NP_357053.1| AGR_L_2541p [Agrobacterium tumefaciens] ref|NP_534056.1| glycosyltransferase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||D98289 hypothetical protein AGR_L_2541 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AF2994 glycosyltransferase Atu3560 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89838.1| AGR_L_2541p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL44372.1| glycosyltransferase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 382 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 126/265 (47%), Gaps = 23/265 (8%) Query: 117 AMAAKSLGIPVVWKISETITDNDFTS-----------ISTELIHKNSDEILAISHTAASC 165 A+AAK P+VW + + +TD F++ I L+ NS+E T + Sbjct: 109 ALAAKLSRRPLVWILHDIVTDTAFSATNRRASLAFARIFARLVAVNSEE------TGRAF 162 Query: 166 FPEDIRAEKVTLLPPSWNDSEMMFEAWSKLRSERRRDLRVAPKEPLIGYISSFINKEKGL 225 A+KV ++ ++ ++ + + + R +L + P +PL+G +++ KG Sbjct: 163 IEAGGEADKVRIVYNGFDPAKAKLHD-AGMAARLRAELGLGP-QPLVGLFGR-LSEWKGQ 219 Query: 226 EHFVKMAVLVSKEHPEAKFMVVGTPGDKSYYDRCVRKVKLEGLTSHFKFVGYEESLPEVY 285 F+ L + E +A + G ++Y R + GL +F+G+ +PE+ Sbjct: 220 HVFLD--ALAAMEGVQAVIVGGALFGQEAYEARIREQASRLGLDGRVRFLGFRSDVPELM 277 Query: 286 CAMDMLVVPSLIREGFGMTALEGLAFGKPVVAYASGGLYEILHAAGCGELLAPVGDIDQL 345 +MD++ S++ E FG +E + G+PVVA GG+ EI+ G LL P GD L Sbjct: 278 ASMDVVAHTSIVAEPFGRVVVEAMMCGRPVVATRGGGVTEIIRDGETG-LLVPPGDASAL 336 Query: 346 AQRVNGLLAEPGLAAVVGSQARERV 370 A + +L++P LA +G RE V Sbjct: 337 AAALGTILSDPALAQRLGQSGREDV 361 >ref|ZP_00069763.1| COG0438: Glycosyltransferase [Oenococcus oeni MCW] Length = 379 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/366 (21%), Positives = 164/366 (44%), Gaps = 37/366 (10%) Query: 21 GAEKLLLFFSRELSP-YFNCVLVAPQEGKLTRQARNNGLNVQLLTIPLVYGMYTPYAGLE 79 G++K+LL L F ++V P+ G L + N + +++ P++ Y G+ Sbjct: 15 GSDKVLLQLVTGLDKKQFKPIVVLPEHGPLEKALETNDIQTEVVAYPILRRKYFNPKGI- 73 Query: 80 PDIRKFQEKLEYCELVEWLAALRPAFIISSTCVHALPAMAA----KSLGIPVVWKISETI 135 F Y + + LA L + + V+ L + K + P++W + E + Sbjct: 74 -----FNYASGYFKAEKVLANLAIKYHVDLIHVNTLAVLEGITLKKRIKKPLIWHVHEIL 128 Query: 136 TDNDFT-SISTELIHKNSDEILAISHTAASCFPEDIRAEK---VTL-----LPPSWNDSE 186 F ++ L K +D+I+ +S+ + A++ VT+ +P +S+ Sbjct: 129 LSPKFMWKLTAYLSAKYADKIVVVSNATGEHLKKAGYAKENQIVTIYNGINIPKGLENSD 188 Query: 187 MMFEAWSKLRSERRRDLRVAPKEPLIGYISSFINKEKGLEHFVKMAVLVSKEHPEAKFMV 246 R++ + + G++ IN KG E F+K ++ + + + + Sbjct: 189 F------------RQEFDIPKNAFVFGHVGR-INAWKGQEDFLKASLKLMSNYSKVHVLF 235 Query: 247 VGT--PGDKSYYDRCVRKVKLEGLTSHFKFVGYEESLPEVYCAMDMLVVPSLIREGFGMT 304 G G++ ++ +++ G + ++G++ + +V+ M++ V S+ + F M Sbjct: 236 SGNAYKGEEWREEKLKKEINESGFSDRIHYLGFQHEIRKVFNTMNVFVSSSIRPDPFPMV 295 Query: 305 ALEGLAFGKPVVAYASGGLYEILHAAGCGELLAPVGDIDQLAQRVNGLLAEPGLAAVVGS 364 LE +A KP+V+Y GG E++ A G L+ P +ID L+ +++ +L P L + G Sbjct: 296 TLEAMANSKPIVSYDHGGPSELIVNAKTGYLVQP-HNIDDLSLKMS-MLINPKLESKFGV 353 Query: 365 QARERV 370 R+RV Sbjct: 354 VGRKRV 359 >gb|AAN64562.1| glycosyltransferase [Streptococcus gordonii] Length = 383 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 144/328 (43%), Gaps = 21/328 (6%) Query: 21 GAEKLLLFFSRELS-PYFNCVLVAPQEGKLTRQARNNGLNVQLLTIPLVYGMYTPYAGLE 79 GA+K+LL + L F ++ P +G L R G V +L P++ Y G+ Sbjct: 15 GADKVLLELIKGLDRQEFEAHVILPNDGVLVEALRQVGAQVSVLDYPILRRKYFNPKGIV 74 Query: 80 PDIRKFQEKLEYCELVEWLAALRPAFIISSTCVHALPAMAAK-SLGIPVVWKISETITD- 137 IR + Y + + A +I + L + K L +P++W + E I Sbjct: 75 DYIRSYNF---YAKQIALYAQEHSIDMIHNNTAAVLEGIYLKRKLKLPLIWHVHEIIVKP 131 Query: 138 ---NDFTSISTELIHKNSDEILAISHTAASCFPED--IRAEKVTLLPPSWNDSEMMFEAW 192 +DF ++ L+ + +D+I+ +S A+ + I+ +V ++ +++ Sbjct: 132 KAISDFINM---LMGRYADKIVTVSQAVANHIKQSPFIKDSQVKVIYNGVDNTVYYPMDA 188 Query: 193 SKLRSERRRDLRVAPKEPLIGYISSFINKEKGLEHFVK-MAVLVSKEHPEAKFMVVGT-P 250 S +R + +A +IG I +N KG F++ + L+ K F+ G P Sbjct: 189 SSIREK----FDIAQDALVIGMIGR-VNAIKGQNDFIEAVEPLLEKNEQAVAFLAGGVFP 243 Query: 251 GDKSYYDRCVRKVKLEGLTSHFKFVGYEESLPEVYCAMDMLVVPSLIREGFGMTALEGLA 310 G++ + +++ + S + Y + E+Y D+ V+PS+ + LE +A Sbjct: 244 GEEWRLEELDKRIASSSVVSQIHRIDYYDKTSELYNMFDIFVLPSIKPDSLPTVVLEAMA 303 Query: 311 FGKPVVAYASGGLYEILHAAGCGELLAP 338 KPVV Y +GG+ E++ G L+ P Sbjct: 304 CSKPVVGYNNGGIAEMVVDDKSGHLVKP 331 >gb|EAA93992.1| unknown [environmental sequence] Length = 238 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 223 KGLEHFVKMAVLVSKEHPEAKFMVVGTPGDKSYYDRCVRKVKLEGLTSHFKFVGY--EES 280 KG+E +K + V+KE + + +G P S+ + C +K LT F G+ S Sbjct: 69 KGVETLIKAFIEVAKEFNDINLINIGQPRGPSF-NICQHLLKENNLTDRVTFKGFVNYNS 127 Query: 281 LPEVYCAMDMLVVPSLIREGFGMTALEGLAFGKPVVAYASGGLYEILHAAGCGELLAPVG 340 LPE Y D++V PS I E F T +G+A G+PV+A GG+ + L+ G L P G Sbjct: 128 LPEYYSISDLVVAPSEIYESFSYTVAQGMACGRPVIASKIGGIPQTLNNGIAGLLFNP-G 186 Query: 341 DIDQLAQRVNGLLAEPGLAAVVGSQARE 368 D++ L +++ + +G +AR+ Sbjct: 187 DVNDLTEKIISIYNSRDHGDRLGKKARK 214 >ref|NP_932014.1| WalN protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE17232.1| WalN protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 372 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 95/190 (50%), Gaps = 4/190 (2%) Query: 195 LRSERRRDLRVAPKEPLIGYISSFINKEKGLEHFVKMAVLVSKEHPEAKFMVVGTPGDKS 254 + S R L ++ K L+ + + KG+ V + + + + K +++G+ D Sbjct: 177 IDSSVRTRLGISDKTFLLTFAGRLVG-WKGMH--VAIDAMAQLQDKDVKLLIIGSGEDLK 233 Query: 255 YYDRCVRKVKLEGLTSHFKFVGYEESLPEVYCAMDMLVVPSLIREGFGMTALEGLAFGKP 314 + ++ V ++L+ VG+++ LPE Y A D + PS+ E FG+T E +A G+P Sbjct: 234 HLEKRVAVLRLKKQIIFHPPVGHDQ-LPEYYAAGDAGIFPSIGDEAFGITIAEAMACGRP 292 Query: 315 VVAYASGGLYEILHAAGCGELLAPVGDIDQLAQRVNGLLAEPGLAAVVGSQARERVDAVY 374 V+A GG+ E++ +L GD +A VN LL++P +G AR+R++ +Y Sbjct: 293 VIASYIGGIPEVVGNENNSGILVTPGDASAIADAVNFLLSQPDRGQKMGKAARQRIETMY 352 Query: 375 GPAAYRARLL 384 RLL Sbjct: 353 TWEHSANRLL 362 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 593,278,966 Number of extensions: 24482335 Number of successful extensions: 64538 Number of sequences better than 1.0e-05: 332 Number of HSP's gapped: 64952 Number of HSP's successfully gapped: 332 Length of query: 401 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 273 Effective length of database: 409,704,906 Effective search space: 111849439338 Effective search space used: 111849439338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)