BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0015.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832797.1| Ribosomal-protein-alanine acetyltransferase [Ba... 73 3e-12 ref|NP_656942.1| Acetyltransf, Acetyltransferase (GNAT) family [... 71 1e-11 ref|NP_979406.1| acetyltransferase, GNAT family [Bacillus cereus... 70 3e-11 ref|NP_347009.1| Predicted acetyltransferase [Clostridium acetob... 65 6e-10 ref|NP_389086.1| similar to hypothetical proteins [Bacillus subt... 64 2e-09 >ref|NP_832797.1| Ribosomal-protein-alanine acetyltransferase [Bacillus cereus ATCC 14579] gb|AAP09998.1| Ribosomal-protein-alanine acetyltransferase [Bacillus cereus ATCC 14579] Length = 149 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 18/167 (10%) Query: 1 LKLKSTRLDLRPLTLAQLSLAGLNYAGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDP 60 +KL++ RL + P T ++ +A N G + G +I G V V QD Sbjct: 1 MKLETERLYIVPCTEERIQVA--NEQGY--NSGPHIVGHV-------------ENVKQDE 43 Query: 61 LNYPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICG 120 PW W V+++E+ ++G I KG+PN+ V +GY E + QGYATEA++ + Sbjct: 44 ALLPW-GAWYVLRKEDDSVLGDIGFKGKPNENQTVEIGYGFIEKYWNQGYATEAVKELID 102 Query: 121 WIFSDPQALWVIADTEKDNAASHKVLKHLGAQKHREAGELIWWRIAR 167 W F + +IA+T DN +S +VL+ L ++ +I W+I + Sbjct: 103 WAFKTGEVETIIAETLLDNYSSMRVLEKLHMKRVNATEMMINWKIEK 149 >ref|NP_656942.1| Acetyltransf, Acetyltransferase (GNAT) family [Bacillus anthracis A2012] ref|NP_845405.1| acetyltransferase, GNAT family [Bacillus anthracis str. Ames] gb|AAP26891.1| acetyltransferase, GNAT family [Bacillus anthracis str. Ames] Length = 153 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 18/171 (10%) Query: 1 LKLKSTRLDLRPLTLAQLSLAGLNYAGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDP 60 +KL++ RL + P T + +A N G + G +I G V V Q+ Sbjct: 1 MKLETERLYIVPCTKESIHVA--NEQGY--NSGPHIVGHV-------------ENVKQNK 43 Query: 61 LNYPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICG 120 PW W VI++E+ ++G I KG+PN++ V VGY E + +GYATEA+Q + Sbjct: 44 DVLPWGA-WYVIRKEDDIVLGDIGFKGKPNEEHTVEVGYGFIEKYWNKGYATEAVQELID 102 Query: 121 WIFSDPQALWVIADTEKDNAASHKVLKHLGAQKHREAGELIWWRIARPDSQ 171 W F + +IA+T DN S +VL+ L ++ ++ W+I + S+ Sbjct: 103 WAFQTGEVETIIAETLLDNYGSIRVLEKLHMKRVDSTETMMNWKIEKNRSK 153 >ref|NP_979406.1| acetyltransferase, GNAT family [Bacillus cereus ATCC 10987] gb|AAS42014.1| acetyltransferase, GNAT family [Bacillus cereus ATCC 10987] Length = 149 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 18/167 (10%) Query: 1 LKLKSTRLDLRPLTLAQLSLAGLNYAGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDP 60 +KL++ RL + P T + +A N G + G +I G V V QD Sbjct: 1 MKLETERLYIVPCTEESIHVA--NEQGY--NSGPHIVGHV-------------ENVKQDK 43 Query: 61 LNYPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICG 120 PW W VI++E+ ++G I KG+PN++ V VGY E + +GYATEA++ + Sbjct: 44 DLLPW-GAWYVIRKEDDIVLGDIGFKGKPNEEHTVEVGYGFIEKYWNKGYATEAVRELIN 102 Query: 121 WIFSDPQALWVIADTEKDNAASHKVLKHLGAQKHREAGELIWWRIAR 167 W F + +IA+T +N +S +VL+ L Q+ ++ W++ + Sbjct: 103 WAFQTGEVEMIIAETLLENESSIRVLEKLHMQRTGTTETMMNWKLEK 149 >ref|NP_347009.1| Predicted acetyltransferase [Clostridium acetobutylicum] pir||B96945 probable acetyltransferase [imported] - Clostridium acetobutylicum gb|AAK78349.1| Predicted acetyltransferase [Clostridium acetobutylicum] Length = 170 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 7/164 (4%) Query: 3 LKSTRLDLRPLTLAQLSLAGLNY-AGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDPL 61 L+S RL LRPL+ L +N G ++I+ + D A+ + K+ + P Sbjct: 6 LESERLLLRPLSFDDL----INIEKGTINLIKVHINQNAIFDFTKSAISKKIKKMEKVPK 61 Query: 62 N-YPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICG 120 + + W T W ++ + + IGFI KG P++ G V VGY+I+ +R+QG TEAL + Sbjct: 62 DIHEWYTYWLIVDKNTKSGIGFIGFKGTPDEGGHVEVGYSISCAYRKQGLMTEALSLLSN 121 Query: 121 WIFSDPQALWVIA-DTEKDNAASHKVLKHLGAQKHREAGELIWW 163 W +P + A K N S++VLK+ + + E ++ Sbjct: 122 WASKNPDLKGITACKVLKTNTGSNRVLKNCNFKLASSSEEFNYY 165 >ref|NP_389086.1| similar to hypothetical proteins [Bacillus subtilis] pir||B69849 conserved hypothetical protein yjdG - Bacillus subtilis emb|CAB13061.1| yjdG [Bacillus subtilis subsp. subtilis str. 168] Length = 168 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 1/161 (0%) Query: 3 LKSTRLDLRPLTLAQLSLAGLNYAGLERDFGLNISGTVLDDEMLYAMQVRHSKVLQDPLN 62 L++ RL L+ + + L A ++ G +G + + A+ ++L Sbjct: 4 LETNRLRLQTIDIPLLDAASKQDHQAIKELGYETNGEWPNSDFFEAIPY-FREILVKNNG 62 Query: 63 YPWLTNWAVIQREEQRLIGFIILKGRPNDQGEVIVGYTINEGHRRQGYATEALQCICGWI 122 +W +++++ ++G G P++ G + +G+ N+ HRR+GY EA Q + W Sbjct: 63 TKGFDSWIIVKKDNYEIVGGTGFLGDPDENGMIEIGFATNKSHRRKGYCVEAAQKLINWA 122 Query: 123 FSDPQALWVIADTEKDNAASHKVLKHLGAQKHREAGELIWW 163 S + A E DN S K L+ LG + ++ E W Sbjct: 123 LSRETVSRITARCEHDNLGSQKTLEKLGFILNHKSAEYKHW 163 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 277,756,154 Number of extensions: 10641257 Number of successful extensions: 19904 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 19946 Number of HSP's successfully gapped: 10 Length of query: 178 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 61 Effective length of database: 439,570,995 Effective search space: 26813830695 Effective search space used: 26813830695 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)