BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0002.p (355 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_979504.1| spore maturation protein cgeB, putative [Bacill... 226 5e-58 ref|NP_243705.1| maturation of the outermost layer of the spore ... 129 1e-28 ref|NP_389860.1| alternate gene name: cgeAB [Bacillus subtilis] ... 124 4e-27 ref|NP_954066.1| hypothetical protein GSU3024 [Geobacter sulfurr... 110 6e-23 ref|NP_389261.1| ykvP [Bacillus subtilis] >gi|7475153|pir||G6986... 87 6e-16 >ref|NP_979504.1| spore maturation protein cgeB, putative [Bacillus cereus ATCC 10987] gb|AAS42112.1| spore maturation protein cgeB, putative [Bacillus cereus ATCC 10987] Length = 331 Score = 226 bits (577), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 189/328 (57%), Gaps = 20/328 (6%) Query: 35 PLKLMYVPQG----FQAIDAGVTEALGQLVSELVISSPETMLETAARESPGAVLVMNGLH 90 P K++++ G + I+A + +L ++ S ++ +PE ++TA + P +LV++GL Sbjct: 6 PKKILFIQSGIPFYYPMIEAAILNSLQKVNSNTIMVNPEKAIKTALKVKPDFILVLSGLS 65 Query: 91 VFPDNHLEQITEI----RKLGIPTAIWFVDDPYFTEDTSVICKHYDHVFTHELGCVEFYH 146 E+ + I + G T +W DDPY+T+ T + +YD++FT +L C++FY Sbjct: 66 -------EEFSSIMPVLKNAGFTTGLWLTDDPYYTDVTQHLVPYYDYIFTQDLNCIKFYR 118 Query: 147 DLGVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIGNAFRNRTELFDGLAPFLQGKKVLI 206 LG +V +LPL N +F P + Y++D+ FIG AF NR D ++ ++ K + I Sbjct: 119 GLGCKNVFHLPLAANQDVFKPSQKEDTYKYDLSFIGTAFENRLTFVDSISEYVAEKNIKI 178 Query: 207 AGGFWERLSTYEELSPFIKDGFIPP---EETANYYSGAKLVINIHRPWEGGQDNRNSFQL 263 G WE L YE L I+ +P E+ +Y K+ IN+HR + N N+ + Sbjct: 179 VGFGWENLKNYERLKEKIQ--LLPLAKYEDALQFYVSTKININLHRSPSDQELNCNAANI 236 Query: 264 PSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKIDYYLNHEKDR 323 + S+N RT+EI+A G+ QLTD+R D+G +Y PG +++TF ++ E K +YYL H ++R Sbjct: 237 QAYSVNNRTFEINAVGSFQLTDIRPDVGKHYIPGVEIETFNSASEFIEKAEYYLEHVQER 296 Query: 324 RQIALQGLRTTLRHHTFISRLPHLLNVL 351 +QIA GL TL+HHT+ R+ LLN + Sbjct: 297 KQIAKNGLDRTLKHHTYDKRIVQLLNYI 324 >ref|NP_243705.1| maturation of the outermost layer of the spore [Bacillus halodurans] pir||G84004 spore outer layer maturation protein cgeB [imported] - Bacillus halodurans (strain C-125) dbj|BAB06558.1| maturation of the outermost layer of the spore [Bacillus halodurans] Length = 267 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 137/252 (54%), Gaps = 12/252 (4%) Query: 101 TEIRKLGIPTAIWFVDDPYFTEDTSVICKHYDHVFTHELGCVEFYHDLGVNSVHYLPLCV 160 T ++ G+P WF +DPY + + + + T + + FY G ++ +YLPL Sbjct: 24 TWCKRKGLPVVTWFTEDPYMIDRSLEVLPYTVKPLTIDQNALSFYKQQGHSNAYYLPLGT 83 Query: 161 NPQMFYPRRTGPQYQFDVVFIGNAFRNRTELFDGLAPFLQGKKVLIAGGFWERLSTYEEL 220 N ++ P + + DV +G+ + +R E+ LA L + G W L + Sbjct: 84 NETVYRPLPSAK--KVDVTLVGHPYPDRVEMIRSLA--LSTSYRIRVVGPWPELPDHVS- 138 Query: 221 SPFIKDGFIPPEETANYYSGAKLVINIHRPWEGGQDNRNSFQLPSRSINPRTYEISACGT 280 + + ++PP+ A+YY+ +KLV+N +R + + N NS Q+ + S+N RT+EI++C Sbjct: 139 ---VINRWVPPDRVASYYNSSKLVLNTYRR-KDEKGNHNSQQIENVSVNNRTFEIASCNV 194 Query: 281 MQLTDVREDLGNYYRPGKD-LDTFENSDELKFKIDYYLNHEKDRRQIALQGLRTTLRHHT 339 MQ+++ ++DL N++ KD + +F++ +EL +IDYYL H+K R + A + L HT Sbjct: 195 MQISEYKQDLYNHF--SKDSIVSFQSLEELIKQIDYYLLHDKKREKKAQKAYEEALTRHT 252 Query: 340 FISRLPHLLNVL 351 F R+ ++N L Sbjct: 253 FHQRITTIINNL 264 >ref|NP_389860.1| alternate gene name: cgeAB [Bacillus subtilis] sp|P42090|CGEB_BACSU CgeB protein pir||A69598 spore maturation protein cgeB - Bacillus subtilis gb|AAA87721.1| CgeB gb|AAB72058.1| CgeB [Bacillus subtilis] gb|AAB81149.1| CgeB [Bacillus subtilis] emb|CAB13870.1| cgeB [Bacillus subtilis subsp. subtilis str. 168] Length = 317 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 161/328 (49%), Gaps = 28/328 (8%) Query: 36 LKLMYVPQGFQAI----DAGVTEALGQLVSELVIS---SPETMLETAARESPGAVLVMNG 88 +K++Y+ G+ I D E +E +I+ E++++ A + P L+M G Sbjct: 1 MKVLYIQSGYGGIYSYFDRWAEECFQNTHTEYMIADKPEAESLMKIEAFQ-PDFTLMMVG 59 Query: 89 LHVFPDNHLEQITEIRKLGIPTAIWFVDDPYFTEDTSVICKHYDHVFTHELGCVEFYHDL 148 V D +T ++ IP +W +DP++ + + + K D + T E +Y +L Sbjct: 60 DRVPHD----WLTWLKGKDIPVYVWLTEDPFYMDISLQVIKLADAILTIEQNAALYYQEL 115 Query: 149 GVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIGNAFRNRTELFDGLA--PFLQGKKVLI 206 G +V+Y+P+ VN ++F T Y +++ IG + NR +L PF V + Sbjct: 116 GYQNVYYVPIPVNHRLFKKMGTEHSYHSNLLIIGYPYPNRVQLMKEAVHLPF----TVRV 171 Query: 207 AGGFWERLSTYEELS-PFIK--DGFIPPEETANYYSGAKLVINIHRPWEGGQDNRNSFQL 263 G W + + L P I ++PPE+ +YY+GA +VIN HRP+ N+N+ ++ Sbjct: 172 IGKEWGKYLPKKVLKQPHIDVVSTWVPPEQAVHYYNGADIVINAHRPYHFA-FNQNTMRI 230 Query: 264 PSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKIDYYLNHEKDR 323 + S N RT++I+AC QLTD+ P + ++ ++ K K +Y+NH ++R Sbjct: 231 KNASFNNRTFDIAACERFQLTDLPAA-----HPFSSIISYHGMNDFKEKAAFYINHPEER 285 Query: 324 RQIALQGLRTTLRHHTFISRLPHLLNVL 351 ++ A + T+ TF LP L + Sbjct: 286 QKAAAANYKETVPAFTF-DELPAKLKAI 312 >ref|NP_954066.1| hypothetical protein GSU3024 [Geobacter sulfurreducens PCA] gb|AAR36416.1| hypothetical protein GSU3024 [Geobacter sulfurreducens PCA] Length = 638 Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 141/322 (43%), Gaps = 43/322 (13%) Query: 43 QGFQAIDAGVTEALGQLVSELVISSPETMLETAARES-PGAVLVMNGLHVFPDNHLEQIT 101 Q +A AG+T L Q V E ARE+ P +L + + P E + Sbjct: 269 QSRRAFHAGLTSLLSQAV------------ELRARETRPDMILALAQAPLLP----ETMK 312 Query: 102 EIRKLGIPTAIWFVDD----PYFTEDTSVICKHYDHVFTHELGCVEFYHDLGVNSVHYLP 157 I GIPTA WFV+D PY+ D++ ++ + T GV YLP Sbjct: 313 RIEARGIPTAFWFVEDYRVLPYW-RDSAPAASYFFGIQTDNFAAE--LARAGVTRYAYLP 369 Query: 158 LCVNPQMFYPRRTGP----QYQFDVVFIGNAFRNRTELFDGLAPFLQGKKVLIAGGFWER 213 C P + P P ++ + F+G + NR F GL F I G W Sbjct: 370 TCAEPSVHRPMELTPAEREEFGSPLSFVGAGYYNRQIFFKGLTDF----PFRIWGSDWPF 425 Query: 214 LSTYEELSPFIKDG--FIPPEETANYYSGAKLVINIHRPWEGGQDNRNSFQLPSRSINPR 271 S L PFI+ G I E T ++ + + +N+H + +NPR Sbjct: 426 PSP---LVPFIQRGGARIDTETTVKIFNASAVNLNLH-----SSTTCDGVVPDGDFVNPR 477 Query: 272 TYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKIDYYLNHEKDRRQIALQGL 331 T+E++ACG QL D R L + G +L+TF DE + KI +L ++RRQ+A +G+ Sbjct: 478 TFELAACGAFQLVDRRALLPELFDEG-ELETFGCLDEAREKISRFLADPEERRQVAGRGM 536 Query: 332 RTTLRHHTFISRLPHLLNVLTA 353 L HT+ R+ L+ ++T Sbjct: 537 ARVLAEHTYEHRMAELVALMTG 558 >ref|NP_389261.1| ykvP [Bacillus subtilis] pir||G69868 hypothetical protein ykvP - Bacillus subtilis emb|CAB13251.1| ykvP [Bacillus subtilis subsp. subtilis str. 168] Length = 399 Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 84/340 (24%), Positives = 148/340 (43%), Gaps = 47/340 (13%) Query: 35 PLKLMYVPQGFQAIDAGVTEALGQLVSELVISSPETMLETAARESPGAVLVMNGLHVFPD 94 P+ L +P GF+ +AG T + VS E + E P ++ M P+ Sbjct: 10 PMWLYGLPNGFR--EAGHTVMISGPVSR------ENITEMIDEFKPDLIVSMGWT---PE 58 Query: 95 NHLEQITEIR----KLGIPTAIWFVDDPYFTEDTSV-ICKHY--DHVFTHELGCVEFYHD 147 + E+ IR K+ IP W +DP T++ ++ + K D VFT + Y Sbjct: 59 HSREKQAWIRNATKKVNIPLVYWATEDPLHTQNFTIPLIKKMKPDFVFTVTPSLCKTYES 118 Query: 148 LGVNSVHYLPLCVNPQMFYPRRTGPQYQFDVVFIGNAFRN----------RTELFDGLAP 197 +G+ + H L + + + + +Y D+ + NA+ N + L + P Sbjct: 119 MGIKAAH-LDFAFHESIHHQIKPLAKYSCDIAVVANAYPNFLEEHPEVFRSSSLKTLIRP 177 Query: 198 FL-QGKKVLIAGGFWERLSTY--EELSPFIKDGFIPPEETANYYSGAKLVINIHRPWEGG 254 + +G ++ G WE++S Y E+ G++ E YS AK++I G Sbjct: 178 LIRKGIRIDFWGRNWEKMSKYIGREIPRNWIHGYLDYTEAYKVYSSAKIII--------G 229 Query: 255 QDNRNSFQLPSRSINPRTYEISACGTMQLTDVREDLGNYYRPGKDLDTFENSDELKFKID 314 N S + RTYEI G LT + ++PG+DL + E K+ Sbjct: 230 LQNCES------QLTQRTYEILGSGGFLLTSDTPAVRGKFKPGRDLIVSSSPKETLEKVK 283 Query: 315 YYLNHEKDRRQIALQGLRTTLRHHTFISRLPHLLNVLTAQ 354 YYLNH+ +R++I + G + +++ ++ R +L VL ++ Sbjct: 284 YYLNHDSERKKIQING-KKAVKNDSYRHRAERMLEVLKSR 322 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.141 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 569,023,933 Number of extensions: 24347885 Number of successful extensions: 48750 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 48735 Number of HSP's successfully gapped: 19 Length of query: 355 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 228 Effective length of database: 412,420,005 Effective search space: 94031761140 Effective search space used: 94031761140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)