BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0020.p (159 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_470829.1| similar to unknown proteins [Listeria innocua] ... 132 4e-30 ref|NP_464981.1| similar to unknown proteins [Listeria monocytog... 129 2e-29 sp|P52309|YE56_LISMO Hypothetical UPF0178 protein Lmo1456 (P17) 129 2e-29 gb|AAC43304.1| P17 >gi|1093600|prf||2104269A PRF P17 129 2e-29 sp|P17868|YQXD_BACSU Hypothetical UPF0178 protein yqxD (p23) 127 6e-29 >ref|NP_470829.1| similar to unknown proteins [Listeria innocua] sp|Q92BQ4|YE93_LISIN Hypothetical UPF0178 protein Lin1493 pir||AD1619 hypothetical protein homolog lin1493 [imported] - Listeria innocua (strain Clip11262) emb|CAC96724.1| lin1493 [Listeria innocua] Length = 146 Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 92/141 (65%) Query: 10 KIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIAN 69 KI+VD DACPVKAEI VA F + VI V+S++H G + + VD G +SAD+ + N Sbjct: 3 KILVDADACPVKAEIKQVAEQFQLDVIFVASFNHYSVNTNGENWIFVDTGKESADMRMMN 62 Query: 70 HITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSK 129 GDI+VTQD GLA++ L K V SNRG+ Y + M ML+ R+ A ER++G YSK Sbjct: 63 LANKGDIIVTQDIGLASILLAKGTYVFSNRGELYREEEMSLMLDIRYRHAKERQQGKYSK 122 Query: 130 GPKAITAEEKIYFQHKLTKLL 150 GPKA++ ++++ F+ ++T Sbjct: 123 GPKAMSDQDRVLFKDRMTTFF 143 >ref|NP_464981.1| similar to unknown proteins [Listeria monocytogenes EGD-e] pir||AH1256 hypothetical protein lmo1456 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99534.1| lmo1456 [Listeria monocytogenes] Length = 146 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 92/141 (65%) Query: 10 KIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIAN 69 +I+VD DACPVKAEI VA+ F + V V+S++H G + + VD G +SAD+ + N Sbjct: 3 QILVDADACPVKAEIKQVAKEFQLEVTFVASFNHYSVNTNGENWIFVDTGKESADMRMMN 62 Query: 70 HITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSK 129 GDI+VTQD GLA++ L K V SNRG+ Y + M ML+ R+ A ER++G YSK Sbjct: 63 LAKKGDIIVTQDIGLASILLAKGTFVFSNRGELYREEEMSLMLDIRYRHAKERQQGKYSK 122 Query: 130 GPKAITAEEKIYFQHKLTKLL 150 GPKA++ +++ F+ +LT L Sbjct: 123 GPKAMSDQDRSLFKDRLTTFL 143 >sp|P52309|YE56_LISMO Hypothetical UPF0178 protein Lmo1456 (P17) Length = 149 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 92/141 (65%) Query: 10 KIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIAN 69 +I+VD DACPVKAEI VA+ F + V V+S++H G + + VD G +SAD+ + N Sbjct: 6 QILVDADACPVKAEIKQVAKEFQLEVTFVASFNHYSVNTNGENWIFVDTGKESADMRMMN 65 Query: 70 HITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSK 129 GDI+VTQD GLA++ L K V SNRG+ Y + M ML+ R+ A ER++G YSK Sbjct: 66 LAKKGDIIVTQDIGLASILLAKGTFVFSNRGELYREEEMSLMLDIRYRHAKERQQGKYSK 125 Query: 130 GPKAITAEEKIYFQHKLTKLL 150 GPKA++ +++ F+ +LT L Sbjct: 126 GPKAMSDQDRSLFKDRLTTFL 146 >gb|AAC43304.1| P17 prf||2104269A PRF P17 Length = 149 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/141 (46%), Positives = 92/141 (65%) Query: 10 KIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHVLRGEEGVSIVQVDRGADSADLYIAN 69 KI+VD DACPVKAEI VA F + VI V+S++H G + + VD G +SAD+ + N Sbjct: 6 KILVDADACPVKAEIKQVAEHFQLDVIFVASFNHYSVNTNGENWIFVDTGKESADMRMMN 65 Query: 70 HITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARAVERRRGHYSK 129 GDI+VTQD GLA++ L K V SNRG+ Y + M ML+ R+ A +R++G YSK Sbjct: 66 LAKKGDIIVTQDIGLASILLAKGTFVFSNRGELYREEEMSLMLDIRYRHAKDRQQGKYSK 125 Query: 130 GPKAITAEEKIYFQHKLTKLL 150 GPKA++ +++ F+ +LT L Sbjct: 126 GPKAMSDQDRSLFKDRLTTFL 146 >sp|P17868|YQXD_BACSU Hypothetical UPF0178 protein yqxD (p23) Length = 164 Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 93/151 (61%), Gaps = 1/151 (0%) Query: 1 MSMERSQERKIVVDGDACPVKAEIIAVARSFGIPVIMVSSYDHV-LRGEEGVSIVQVDRG 59 +++ QE+ I VD DACPVK EI+ A + + V+ V+S++H L VD Sbjct: 6 ITLLNEQEKTIFVDADACPVKDEILQTASEYEVQVLFVASFEHYQLSRSNEEKWKYVDPH 65 Query: 60 ADSADLYIANHITAGDIVVTQDYGLAALALGKRCRVLSNRGQEYDDLGMDFMLESRHARA 119 ++ADLYIANH+ GDIVVTQD GLA+L L + V+S RG+ Y + +DF LE RH Sbjct: 66 KEAADLYIANHVKPGDIVVTQDIGLASLLLNRNVSVMSERGRLYKEDTIDFALEGRHFSG 125 Query: 120 VERRRGHYSKGPKAITAEEKIYFQHKLTKLL 150 +RR+G Y+KGPK + E++ F L K+L Sbjct: 126 KQRRKGVYAKGPKKLNKEDRERFITLLQKIL 156 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 205,334,991 Number of extensions: 7314935 Number of successful extensions: 18869 Number of sequences better than 1.0e-05: 93 Number of HSP's gapped: 18813 Number of HSP's successfully gapped: 93 Length of query: 159 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 44 Effective length of database: 445,001,193 Effective search space: 19580052492 Effective search space used: 19580052492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)