BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0019.p (695 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242237.1| glycyl-tRNA synthetase beta chain; glycyl-tRNA ... 662 0.0 ref|NP_390404.1| glycyl-tRNA synthetase (beta subunit) [Bacillus... 632 e-180 ref|NP_692869.1| glycine-tRNA ligase beta chain [Oceanobacillus ... 578 e-163 ref|NP_470831.1| similar to glycyl-tRNA synthetase beta chain [L... 574 e-162 ref|NP_464983.1| similar to glycyl-tRNA synthetase beta chain [L... 566 e-160 >ref|NP_242237.1| glycyl-tRNA synthetase beta chain; glycyl-tRNA synthetase (beta subunit) [Bacillus halodurans] sp|Q9KD48|SYGB_BACHD Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain) (GlyRS) pir||C83821 glycyl-tRNA synthetase (beta subunit) glyS [imported] - Bacillus halodurans (strain C-125) dbj|BAB05090.1| glycyl-tRNA synthetase beta chain [Bacillus halodurans] Length = 693 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/691 (49%), Positives = 457/691 (66%), Gaps = 3/691 (0%) Query: 6 KDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDAAE 65 +D L EIGLEE+PARF+ +QL D+ +L+ RIS +++++TPRRLAVLV AE Sbjct: 4 RDFLLEIGLEELPARFVSDGEKQLADKVESFLKEQRISFEQISSFSTPRRLAVLVIGLAE 63 Query: 66 KQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKNSE 125 KQ D+ EE +GP++KIALD SG W+KAA GFAR QGVS + +E+ G EYI+A K Sbjct: 64 KQADVEEESRGPAKKIALDESGNWTKAAQGFARGQGVSVDDLYIQEVKGTEYIFAKKFVA 123 Query: 126 GVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVKAG 185 G T+SLL E L +++++ FPKNMRW Y ++ RPI+WLVAL+GQEVI EITGV AG Sbjct: 124 GQETASLLPE-LKELITSLHFPKNMRWHTYSLRYARPIQWLVALYGQEVIPFEITGVAAG 182 Query: 186 NVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAIKD 245 + GHRFLG I EP Y E + Q+V+ D +ER++ I QI + EEK W I I + Sbjct: 183 LETAGHRFLGENVTIDEPTLYKEKLLQQYVMADSEERKKAIRHQIQSIMEEKDWVIPIDE 242 Query: 246 DXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVTVR 305 D G FD AFL++P +VLITSMREHQRYFPV + AG LL +FVT+R Sbjct: 243 DLLDEVTNLVEYPTALFGRFDEAFLSLPNEVLITSMREHQRYFPVKNQAGELLPYFVTIR 302 Query: 306 NGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGDKV 365 NG+ L+ I +GNEKVLRARLSDA FFY EDQKL I +A +L+ IVYHEELGS+GDK+ Sbjct: 303 NGDHRHLENIVKGNEKVLRARLSDAAFFYGEDQKLNIDEANKRLDQIVYHEELGSIGDKI 362 Query: 366 RRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKAGE 425 +R++ +A + KLG++++T ++R A+ICKFDLVTQMV EF ELQG MGE YA AGE Sbjct: 363 KRVKVLAASIAEKLGVTSQTLQAINRVAEICKFDLVTQMVGEFPELQGRMGEVYAEIAGE 422 Query: 426 PEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYALRR 485 P VA+GI EHY PRFAGD P+S G VVSLADK+DTI CF IG+IPTGSQDPYALRR Sbjct: 423 PPEVAKGIVEHYLPRFAGDQSPSSVQGTVVSLADKLDTIAACFGIGLIPTGSQDPYALRR 482 Query: 486 QAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLLSD 545 QAAG+VQ++L+H+L + ++E+ +E + ++ L EFF LRVK L D Sbjct: 483 QAAGVVQILLDHELDLDVDELLLETVEQLQEKELLTVPESEVVKQLREFFALRVKTKLQD 542 Query: 546 -NVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAEGT 604 VRYD+ DAV+A+G ++ V +++ L+ VN+ +FK V+ L+RV+N+A KA + Sbjct: 543 EGVRYDLTDAVLASGISNVPVVFKKAKLLVSKVNT-PEFKELVEGLSRVTNIAGKAEKNV 601 Query: 605 AVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMVMA 664 A+ P L ++E ER LYE + Q + + +F+ VMVM Sbjct: 602 AINPDLFEKEEERVLYEAYVQTKDLVQGALASGDVSAAYAALEQTIEPIHQYFEHVMVMV 661 Query: 665 EDEQIRANRLALLAGIDADSKAFADFGKLVW 695 +++ I+ NRLAL+ ++A+F ++V+ Sbjct: 662 DEQVIKENRLALMHAFAGVIGSYANFQEIVF 692 >ref|NP_390404.1| glycyl-tRNA synthetase (beta subunit) [Bacillus subtilis] sp|P54381|SYGB_BACSU Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain) (GlyRS) pir||B69636 glycine-tRNA ligase (EC 6.1.1.14) beta chain glyS - Bacillus subtilis dbj|BAA12485.1| YqfK [Bacillus subtilis] emb|CAB14455.1| glycyl-tRNA synthetase (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 679 Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust. Identities = 315/690 (45%), Positives = 446/690 (64%), Gaps = 17/690 (2%) Query: 6 KDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDAAE 65 +D+L EIGLEE+PARF+ +M QL D+ WL+ I+H V + TPRRLAV VKD AE Sbjct: 4 QDLLLEIGLEEMPARFLNESMVQLGDKLTGWLKEKNITHGEVKLFNTPRRLAVFVKDVAE 63 Query: 66 KQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKNSE 125 KQ+DI EE KGP++KIALDA G W+KAA+GF++ QG + E KE+ G+EY++ K Sbjct: 64 KQDDIKEEAKGPAKKIALDADGNWTKAAIGFSKGQGANVEDLYIKEVKGIEYVFVQKFQA 123 Query: 126 GVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVKAG 185 G T SLL E LSG+++++ FPKNMRWG D +++RPI+W+VALFGQ+VI IT V++G Sbjct: 124 GQETKSLLPE-LSGLITSLHFPKNMRWGNEDLRYIRPIKWIVALFGQDVIPFSITNVESG 182 Query: 186 NVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAIKD 245 ++GHRFLG E I P+ Y E ++ QHV+ D R+++I SQ+ +A E W+I + + Sbjct: 183 RTTQGHRFLGHEVSIESPSAYEEQLKGQHVIADPSVRKQMIQSQLETMAAENNWSIPVDE 242 Query: 246 DXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVTVR 305 D G+F++ FL+IP++VL+T+M+EHQRYFPV D G LL F+TVR Sbjct: 243 DLLDEVNHLVEYPTALYGSFESEFLSIPEEVLVTTMKEHQRYFPVKDKNGDLLPHFITVR 302 Query: 306 NGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGDKV 365 NGN+ +++ +ARGNEKVLRARLSDA FFY+EDQKL I + KLENIV+HEELGS+ DKV Sbjct: 303 NGNSHAIENVARGNEKVLRARLSDASFFYKEDQKLNIDANVKKLENIVFHEELGSLADKV 362 Query: 366 RRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKAGE 425 RR+ ++A++L V+L T V R A+I KFDLVT M+ EF ELQG MGE YAR GE Sbjct: 363 RRVTSIAEKLAVRLQADEDTLKHVKRAAEISKFDLVTHMIYEFPELQGIMGEKYARMLGE 422 Query: 426 PEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYALRR 485 EAVA + EHY PR AG P++ G VV++ADK+DTI FSIG+IPTGSQDPY L R Sbjct: 423 DEAVAAAVNEHYMPRSAGGETPSTFTGAVVAMADKLDTIASFFSIGVIPTGSQDPYGLPR 482 Query: 486 QAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLLS- 544 QA+GIV ++L+ +S EE+ EN L +FF R+K +L+ Sbjct: 483 QASGIVAILLDRNWGISFEELLTFVQTDKEN-------------ELLDFFTQRLKYVLNA 529 Query: 545 DNVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAEGT 604 + +R+DV+DAV+ + + + + +++ L + + FK T ++L RV +++ K G Sbjct: 530 EQIRHDVIDAVLESSELEPYSALHKAQVLEQKLGAPG-FKETAEALGRVISISKKGVRGD 588 Query: 605 AVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMVMA 664 + P L + E E KL++ +Q Q + LK+ + +FD MV+A Sbjct: 589 -IQPDLFENEYEAKLFDAYQTAKENLQENFSKKDYEAALASLAALKEPIDAYFDHTMVIA 647 Query: 665 EDEQIRANRLALLAGIDADSKAFADFGKLV 694 ++E ++ANRLA + + + K+FA+ L+ Sbjct: 648 DNESLKANRLAQMVSLADEIKSFANMNALI 677 >ref|NP_692869.1| glycine-tRNA ligase beta chain [Oceanobacillus iheyensis HTE831] dbj|BAC13904.1| glycine-tRNA ligase beta chain [Oceanobacillus iheyensis HTE831] Length = 692 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 301/693 (43%), Positives = 424/693 (61%), Gaps = 6/693 (0%) Query: 4 LSKDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDA 63 +++D+L EIGLEE+PARFI A QL +T +WLE +RIS V +Y+TPRRLAV VK+ Sbjct: 1 MARDVLIEIGLEELPARFIDDAELQLYTKTKQWLEENRISSENVISYSTPRRLAVFVKNM 60 Query: 64 AEKQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKN 123 AEKQ I E+VKGP+ KIA D G W+KAA GF + QG++ + +E+ G+ YIY TK+ Sbjct: 61 AEKQSSIEEDVKGPALKIAKDEDGNWTKAAQGFTKGQGLTTDDIVVREVKGISYIYVTKH 120 Query: 124 SEGVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVK 183 EG LL E I+ ++TF KNMRWG+ ++ RPIRWLVA+ G EVI EI V Sbjct: 121 IEGRPIQELLPE-FKSIIESITFGKNMRWGSETIRYARPIRWLVAMMGNEVIPFEIAHVA 179 Query: 184 AGNVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAI 243 NV+ GHRFLG E I EPA+Y +T++ +V+V K+RE LI+ Q++KL E G+ I + Sbjct: 180 TNNVTYGHRFLGEEVTIQEPAEYEKTLKDNYVIVKAKDRETLIVEQLSKLEREHGFEIPV 239 Query: 244 KDDXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVT 303 + G F+ A+L IP +VLITSM+EHQRYFPV G L +FV Sbjct: 240 DQELLEEVRNLVEFPTAFVGKFEEAYLEIPPEVLITSMKEHQRYFPVH-KKGVLQPYFVG 298 Query: 304 VRNGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGD 363 VRNG+ ++ +A+GNEKVLRARL+DA+FFY ED I KL +V+ E+LG+ D Sbjct: 299 VRNGDNYHIETVAKGNEKVLRARLADAEFFYNEDLHQSIDFFQEKLTKVVFQEKLGTYSD 358 Query: 364 KVRRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKA 423 KV R++ +ADR++ KL L + + R A+I KFDL+T MVNEF+ELQG +GE YA Sbjct: 359 KVERMKQIADRISEKLSLESDDRKIIERAAEISKFDLMTSMVNEFTELQGIIGEKYANHF 418 Query: 424 GEPEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYAL 483 GE A ++ I EHYQP+ A D +P + +G VVS+ADK+DTI GC ++G++PTGSQDPY L Sbjct: 419 GENSATSQAIKEHYQPKHAKDDLPQTVIGSVVSVADKLDTIAGCIAVGLVPTGSQDPYGL 478 Query: 484 RRQAAGIVQMVLEHKLTVSLEEIFDAALEVHENLRTEKPFAPDLRINLYEFFGLRVKRLL 543 RRQA+ I++++ K +++EE+ D AL+V + ++ L EFF LR L+ Sbjct: 479 RRQASAILRILHNEKWNLTVEELIDIALDVFQ--KSNVTIMEKTNEELIEFFRLRAVYLM 536 Query: 544 SDN-VRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAAE 602 D + DV+ AV ++ +++ L D N + FK ++L RV NL+ K Sbjct: 537 KDKGLEVDVIHAVTDQKLGNVFVSFEKAKELSDKRNDET-FKPIQEALVRVLNLSNKVET 595 Query: 603 GTAVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVMV 662 + L+ E+E+ LY + I Y+ + L + FFD+ MV Sbjct: 596 NELIREDKLETESEKILYTRYLDIKETYEKQLLHNETKQALATLAQLAAPIHAFFDNNMV 655 Query: 663 MAEDEQIRANRLALLAGIDADSKAFADFGKLVW 695 MA+D +IR NRLAL+ + + +AD K+ W Sbjct: 656 MADDLEIRNNRLALIQALTSLILPYADLRKIEW 688 >ref|NP_470831.1| similar to glycyl-tRNA synthetase beta chain [Listeria innocua] sp|Q92BQ2|SYGB_LISIN Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain) (GlyRS) pir||AF1619 glycyl-tRNA synthetase beta chain homolog glyS [imported] - Listeria innocua (strain Clip11262) emb|CAC96726.1| glyS [Listeria innocua] Length = 688 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 291/695 (41%), Positives = 442/695 (63%), Gaps = 15/695 (2%) Query: 4 LSKDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDA 63 +SKD L EIGLEE+PA+++ +++ QL+ R WL+ ++I + Y+TPRRL VLV++ Sbjct: 1 MSKDFLLEIGLEEMPAKYVTSSVLQLEKRVTDWLKDNQIEFKEIKTYSTPRRLTVLVEEM 60 Query: 64 AEKQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKN 123 AE+Q + EE KGP++KIALD G WSKAALGFA+SQ V+PE TF+E+ GVEYIY K Sbjct: 61 AEEQANRVEEAKGPAKKIALDDEGNWSKAALGFAKSQKVAPEDLTFREIKGVEYIYIKKE 120 Query: 124 SEGVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVK 183 G T++LL L +V++MTFP +M WG+ D +++RPI+WL+A+FG+E+I EITGV Sbjct: 121 VIGEKTTALLP-SLEKVVTSMTFPVSMHWGSNDLRYIRPIKWLIAMFGEEIIPFEITGVS 179 Query: 184 AGNVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAI 243 N SRGHRFLG A I +P+ Y + Q V+V+ ER++ I+ Q+ +L + W I Sbjct: 180 TSNTSRGHRFLGKTATINQPSDYPHALLEQFVVVNASERKQAIVEQLRELETMENWQIRE 239 Query: 244 KDDXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVT 303 DD G F+ +L +P++VLIT+M+EHQRYFPVF G LL FVT Sbjct: 240 DDDLLEEVTNLVEYPTVLAGNFEKEYLELPEEVLITTMKEHQRYFPVFSQEGELLPHFVT 299 Query: 304 VRNGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGD 363 VRNGN E+LD +ARGNEKVLRARLSDA FFY+ED K+ I +A+AKL+NIV+HE+LG++ + Sbjct: 300 VRNGNHENLDTVARGNEKVLRARLSDADFFYQEDLKITIDEAVAKLQNIVFHEKLGTLTE 359 Query: 364 KVRRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKA 423 K+ R++ VA L L + ++ R +I KFDLVT +V EF ELQG MGE YA Sbjct: 360 KMERVQKVALMLADYLNWQEEDKQDIIRLTNIYKFDLVTNIVGEFPELQGLMGEKYALLQ 419 Query: 424 GEPEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYAL 483 GE A+A I EHY P A +P +++G ++++ADK++T++G F + I+PTGS DP+ L Sbjct: 420 GEKPAIATAIREHYLPSSAEGVLPQTDLGSLIAIADKLETLIGFFCVNIVPTGSADPFGL 479 Query: 484 RRQAAGIVQMVLEHKLTVSLEEIFDAALEVHE-NLRTEKPFAPDLRINLYEFFGLRVKRL 542 RR A G ++++ + + + E+ +++ TE P A D++ + F R++ + Sbjct: 480 RRSAFGAMRIIQANGWDIPMLEVISRIVDMERAEGATELPSA-DVKKEVQTFLKNRLRVI 538 Query: 543 LS-DNVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQAD---FKITVDSLTRVSNLAA 598 L ++R+D++DAVI + I ++ R++ L N AD F+ T+++LTRV ++ Sbjct: 539 LQGHHIRHDIIDAVIGGDPNVIPQLIDRAQIL----NKHADAEWFRPTIEALTRVVKISK 594 Query: 599 KAAEGTAVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFD 658 K +G V P+L + E E++L++ + + Y + L+ + G+FD Sbjct: 595 KYEDGVEVDPNLFENEYEQELFDKLEKLKYDY----AGLTIVDRLKAFADLRTTIDGYFD 650 Query: 659 SVMVMAEDEQIRANRLALLAGIDADSKAFADFGKL 693 + +VM ++++++ NRLALL + + K FA ++ Sbjct: 651 NTLVMTDNDELKNNRLALLFELASFIKEFAQMDEI 685 >ref|NP_464983.1| similar to glycyl-tRNA synthetase beta chain [Listeria monocytogenes EGD-e] sp|Q8Y754|SYGB_LISMO Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain) (GlyRS) pir||AB1257 glycyl-tRNA synthetase beta chain homolog glyS [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99536.1| glyS [Listeria monocytogenes] Length = 688 Score = 566 bits (1458), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/692 (41%), Positives = 439/692 (63%), Gaps = 9/692 (1%) Query: 4 LSKDILFEIGLEEVPARFIRAAMEQLKDRTVKWLEASRISHSGVTAYATPRRLAVLVKDA 63 +SKD L EIGLEE+PA+++ +++ QL+ R WL ++I + Y+TPRRL VLV+ Sbjct: 1 MSKDFLLEIGLEEMPAQYVTSSVLQLEKRVTDWLTENKIEFGEIKTYSTPRRLTVLVEGM 60 Query: 64 AEKQEDISEEVKGPSRKIALDASGEWSKAALGFARSQGVSPEQFTFKELAGVEYIYATKN 123 AE+Q + EE KGP++KIALD G WSKAALGFA+SQ V P TF+++ GVEYIY K Sbjct: 61 AEEQANRVEEAKGPAKKIALDEEGNWSKAALGFAKSQKVDPADLTFRDIKGVEYIYIKKE 120 Query: 124 SEGVNTSSLLSEGLSGIVSAMTFPKNMRWGAYDFKFVRPIRWLVALFGQEVIDLEITGVK 183 G TS+LL L +V++MTFP +M WG+ D +++RPI+WL+A+F +E+I EITGV Sbjct: 121 VIGEKTSTLLP-SLEKVVTSMTFPVSMHWGSNDLRYIRPIKWLIAMFDEEIIPFEITGVT 179 Query: 184 AGNVSRGHRFLGTEAVIAEPAKYVETMRSQHVLVDVKEREELILSQINKLAEEKGWTIAI 243 N SRGHRFLG A I +P+ Y + Q V+V+ +ER++ I+ Q+ +L + W I Sbjct: 180 TSNTSRGHRFLGKSATIKQPSDYPNALLEQFVVVNAEERKQAIVEQLRELESMENWQIKE 239 Query: 244 KDDXXXXXXXXXXXXXXXXGTFDAAFLNIPQDVLITSMREHQRYFPVFDAAGALLSFFVT 303 DD G F+ +L +P++VLIT+M+EHQRYFPVF AG LL FVT Sbjct: 240 DDDLLEEVTNLVEYPTVLSGNFEKEYLELPEEVLITTMKEHQRYFPVFSQAGELLPHFVT 299 Query: 304 VRNGNAESLDVIARGNEKVLRARLSDAKFFYEEDQKLQISDALAKLENIVYHEELGSVGD 363 VRNGN E+LD +ARGNEKVLRARLSDA FFY+ED K+ I +A+AKL+NIV+HE+LG++ + Sbjct: 300 VRNGNHENLDTVARGNEKVLRARLSDADFFYQEDLKMTIDEAVAKLQNIVFHEKLGTLTE 359 Query: 364 KVRRIRAVADRLTVKLGLSAKTAAEVSRTADICKFDLVTQMVNEFSELQGTMGEDYARKA 423 K++R++ VA L L + ++ R +I KFDLVT +V EF ELQG MGE YA Sbjct: 360 KMKRVQKVALMLADYLDWQEEDKQDIIRLTNIYKFDLVTNIVGEFPELQGLMGEKYALLQ 419 Query: 424 GEPEAVARGIFEHYQPRFAGDAVPASEVGLVVSLADKIDTIVGCFSIGIIPTGSQDPYAL 483 GE A+A I EHY P A +P +++G ++++ADK++T++G F + I+PTGS DP+ L Sbjct: 420 GEKPAIATAIREHYLPNSAEGELPQTDLGSLIAIADKLETLIGFFCVNIVPTGSADPFGL 479 Query: 484 RRQAAGIVQMVLEHKLTVSLEEIFDAALEVHE-NLRTEKPFAPDLRINLYEFFGLRVKRL 542 RR A G ++++ + + + E+ +++ TE P A D++ + F R++ + Sbjct: 480 RRSAFGAMRIIQANGWNIPMLEVISRIVDMERAEGSTELPDA-DVKKEVQTFLKNRLRVI 538 Query: 543 LS-DNVRYDVVDAVIAAGFDDIVAVVGRSRALMDTVNSQADFKITVDSLTRVSNLAAKAA 601 L ++R+D++DAVI + I ++ R++ L + ++ F+ T+++L+RV +A K Sbjct: 539 LQGHHIRHDIIDAVIGGDPNVIPQLIDRAQILNEHAEAEW-FRPTIEALSRVVKIAKKYE 597 Query: 602 EGTAVAPSLLKEEAERKLYETWQAIHSPYQXXXXXXXXXXXXXXXSGLKDAVTGFFDSVM 661 +G V P+L + E E+ L++ + + Y + L+ + +FD+ + Sbjct: 598 DGVEVDPALFENEYEQALFDKLEKLKFDY----AGLTIIERLKAFADLRTTIDAYFDNTL 653 Query: 662 VMAEDEQIRANRLALLAGIDADSKAFADFGKL 693 VM+++++++ NRLALL + + K FA ++ Sbjct: 654 VMSDNDELKNNRLALLFELASFIKEFAQMDEI 685 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 879,715,570 Number of extensions: 33208966 Number of successful extensions: 91243 Number of sequences better than 1.0e-05: 617 Number of HSP's gapped: 89722 Number of HSP's successfully gapped: 621 Length of query: 695 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 562 Effective length of database: 396,129,411 Effective search space: 222624728982 Effective search space used: 222624728982 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)