BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0015.p
         (309 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_834009.1| GTP-binding protein [Bacillus cereus ATCC 14579...   426   e-118
ref|NP_980673.1| GTP-binding protein Era [Bacillus cereus ATCC 1...   423   e-117
ref|NP_658331.1| MMR_HSR1, GTPase of unknown function [Bacillus ...   422   e-117
ref|NP_390407.1| GTP-binding protein [Bacillus subtilis] >gi|116...   421   e-116
ref|NP_242233.1| GTP-binding protein (Era/ThdF family) [Bacillus...   414   e-114

>ref|NP_834009.1| GTP-binding protein [Bacillus cereus ATCC 14579]
 gb|AAP11210.1| GTP-binding protein [Bacillus cereus ATCC 14579]
          Length = 301

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 200/294 (68%), Positives = 247/294 (84%)

Query: 15  FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74
           +KSGFV+IIGRPNVGKST +N++IGQKIAIMSDKPQTTRNKI GVYT N++Q++F+DTPG
Sbjct: 6   YKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDAQVIFIDTPG 65

Query: 75  IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134
           IHK + KLGD+M + A +TL EV+ VLF+V+A EG G G+ +I E+LK+ K PV LV+NK
Sbjct: 66  IHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINK 125

Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194
           ID++ PE LL LI +Y KLHEFAEIVPISA  G+NV+ L+  + KYLPEGPQYYPE+Q+T
Sbjct: 126 IDQLHPEQLLELIDQYRKLHEFAEIVPISALDGNNVDALIGTIKKYLPEGPQYYPENQVT 185

Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGII 254
           DHPE+F+ AELIREK+LHLTREEVPHS+AV I+ ++    G V+++A I VER SQKGII
Sbjct: 186 DHPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERASQKGII 245

Query: 255 IGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308
           IGKQG MLKEVG+RAR DIE LLGSK+FLE+WVKV+KDWRN+   LRDLGF +D
Sbjct: 246 IGKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299


>ref|NP_980673.1| GTP-binding protein Era [Bacillus cereus ATCC 10987]
 gb|AAS43281.1| GTP-binding protein Era [Bacillus cereus ATCC 10987]
          Length = 301

 Score =  423 bits (1088), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/294 (67%), Positives = 246/294 (83%)

Query: 15  FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74
           +KSGFV+IIGRPNVGKST +N++IGQKIAIMSDKPQTTRNKI GVYT N+SQ++F+DTPG
Sbjct: 6   YKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPG 65

Query: 75  IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134
           IHK + KLGD+M + A +TL EV+ VLF+V+A EG G G+ +I E+LK+ K PV LV+NK
Sbjct: 66  IHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINK 125

Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194
           ID++ PE LL LI +Y KLH+FAEIVPISA  G+NV  L+  + KYLPEGPQYYP++Q+T
Sbjct: 126 IDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNVEALIGTIKKYLPEGPQYYPDNQVT 185

Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGII 254
           DHPE+F+ AELIREK+LHLTREEVPHS+AV I+ ++    G V+++A I VER SQKGII
Sbjct: 186 DHPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGII 245

Query: 255 IGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308
           IGKQG MLKEVG+RAR DIE LLGSK+FLE+WVKV+KDWRN+   LRDLGF +D
Sbjct: 246 IGKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299


>ref|NP_658331.1| MMR_HSR1, GTPase of unknown function [Bacillus anthracis A2012]
 ref|NP_846747.1| GTP-binding protein Era [Bacillus anthracis str. Ames]
 gb|AAP28233.1| GTP-binding protein Era [Bacillus anthracis str. Ames]
          Length = 301

 Score =  422 bits (1084), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/294 (67%), Positives = 245/294 (83%)

Query: 15  FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74
           +KSGFV+IIGRPNVGKST +N++IGQKIAIMSDKPQTTRNKI GVYT N+SQ++F+DTPG
Sbjct: 6   YKSGFVSIIGRPNVGKSTFLNRIIGQKIAIMSDKPQTTRNKIQGVYTENDSQVIFIDTPG 65

Query: 75  IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134
           IHK + KLGD+M + A +TL EV+ VLF+V+A EG G G+ +I E+LK+ K PV LV+NK
Sbjct: 66  IHKPKHKLGDFMVKMAQTTLKEVDIVLFMVNAVEGFGRGEEFIIEKLKETKQPVFLVINK 125

Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194
           ID++ PE LL LI +Y KLH+FAEIVPISA  G+N   L+  + KYLPEGPQYYP++Q+T
Sbjct: 126 IDQVHPEQLLELIDQYRKLHDFAEIVPISALDGNNAEALIGTIKKYLPEGPQYYPDNQVT 185

Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGII 254
           DHPE+F+ AELIREK+LHLTREEVPHS+AV I+ ++    G V+++A I VER SQKGII
Sbjct: 186 DHPERFIIAELIREKVLHLTREEVPHSVAVVIDAIQKREGGAVYINATIVVERPSQKGII 245

Query: 255 IGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308
           IGKQG MLKEVG+RAR DIE LLGSK+FLE+WVKV+KDWRN+   LRDLGF +D
Sbjct: 246 IGKQGKMLKEVGKRARFDIEALLGSKVFLEVWVKVQKDWRNKMSQLRDLGFRED 299


>ref|NP_390407.1| GTP-binding protein [Bacillus subtilis]
 sp|P42182|ERA_BACSU GTP-binding protein era homolog (Bex protein)
 pir||B69593 GTP-binding protein bex - Bacillus subtilis
 gb|AAB59994.1| Bex
 dbj|BAA12482.1| YqfH [Bacillus subtilis]
 emb|CAB14458.1| GTP-binding protein [Bacillus subtilis subsp. subtilis str. 168]
          Length = 301

 Score =  421 bits (1081), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/294 (66%), Positives = 243/294 (82%)

Query: 15  FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74
           FKSGFV+IIGRPNVGKST +N+VIGQKIAIMSDKPQTTRNK+ GV T   SQ +F+DTPG
Sbjct: 6   FKSGFVSIIGRPNVGKSTFLNRVIGQKIAIMSDKPQTTRNKVQGVLTTGTSQTIFIDTPG 65

Query: 75  IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134
           IHK + KLGD+M + A +TL EV+ +LF+++A EG G GD +I E+L+ + TPV L++NK
Sbjct: 66  IHKPKHKLGDFMMKVAQNTLKEVDLILFMINAEEGYGKGDEFIIEKLQTMSTPVFLIVNK 125

Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194
           IDKI P+ LL LI EY K + F EIVPISA  G+N+ TLL Q+  YLPEGPQ+YP DQ+T
Sbjct: 126 IDKIHPDQLLLLIDEYRKRYPFKEIVPISALEGNNIETLLAQIEAYLPEGPQFYPSDQVT 185

Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDMRVESNGVVHVSAVIFVERDSQKGII 254
           DHPE+F+ +ELIREK+LHLTREE+PHSIAVAIE ++ + NG VHV+A I VERDSQKGI+
Sbjct: 186 DHPERFIISELIREKVLHLTREEIPHSIAVAIESIKGQDNGSVHVAATIVVERDSQKGIV 245

Query: 255 IGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308
           IGK+G++LKEVG+RAR DIE LLGS+++LELWVKV+KDWRN+   LRD GF +D
Sbjct: 246 IGKKGSLLKEVGKRARADIEALLGSRVYLELWVKVQKDWRNKMSQLRDFGFKED 299


>ref|NP_242233.1| GTP-binding protein (Era/ThdF family) [Bacillus halodurans]
 sp|Q9KD52|ERA_BACHD GTP-binding protein era homolog
 pir||G83820 GTP-binding protein (Era/ThdF family) bex [imported] - Bacillus
           halodurans (strain C-125)
 dbj|BAB05086.1| GTP-binding protein (Era/ThdF family) [Bacillus halodurans]
          Length = 304

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/295 (67%), Positives = 242/295 (82%), Gaps = 1/295 (0%)

Query: 15  FKSGFVAIIGRPNVGKSTLMNQVIGQKIAIMSDKPQTTRNKIHGVYTANNSQIVFLDTPG 74
           FKSGFV+IIGRPNVGKSTL+N VIGQKIAIMSDKPQTTRNKI GVYT+ +SQIVF+DTPG
Sbjct: 8   FKSGFVSIIGRPNVGKSTLLNHVIGQKIAIMSDKPQTTRNKIQGVYTSEDSQIVFIDTPG 67

Query: 75  IHKRQSKLGDYMNQTAMSTLHEVEAVLFLVDASEGMGGGDRYIAEQLKDVKTPVILVMNK 134
           IHK + KLGD+M + A +TL EV+ +L++VD +E  G G+ +I E+LK+ KTPVILV+NK
Sbjct: 68  IHKPKHKLGDFMMKVAQNTLKEVDLILYVVDGAEAFGPGEEFIIERLKEAKTPVILVINK 127

Query: 135 IDKIEPEALLPLITEYNKLHEFAEIVPISAKLGSNVNTLLDQVVKYLPEGPQYYPEDQIT 194
           IDK+ P+ LL LI  Y   HEF E+VP+SA  G+NV TLL ++ K+L EGPQYYP DQ+T
Sbjct: 128 IDKVHPDDLLSLIETYRHKHEFEEVVPVSALQGNNVPTLLLEITKHLSEGPQYYPSDQVT 187

Query: 195 DHPEQFVCAELIREKILHLTREEVPHSIAVAIEDM-RVESNGVVHVSAVIFVERDSQKGI 253
           DHPE+FV AELIREK+LHLTREE+PHSIAV IE + R +    V++ A I VER SQKGI
Sbjct: 188 DHPERFVIAELIREKVLHLTREEIPHSIAVVIEQIKRRQHQDTVYIGATIVVERSSQKGI 247

Query: 254 IIGKQGAMLKEVGRRARTDIENLLGSKIFLELWVKVKKDWRNQERVLRDLGFHKD 308
           IIGKQG MLKEVG++AR DIE LLGSK+FLELWVKV+KDWRN+ + LRD GF +D
Sbjct: 248 IIGKQGKMLKEVGQQARADIEALLGSKVFLELWVKVQKDWRNKPQHLRDYGFRED 302


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.136    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 444,989,640
Number of extensions: 18023829
Number of successful extensions: 75898
Number of sequences better than 1.0e-05: 1344
Number of HSP's gapped: 75430
Number of HSP's successfully gapped: 1584
Length of query: 309
Length of database: 757,237,578
Length adjustment: 125
Effective length of query: 184
Effective length of database: 417,850,203
Effective search space: 76884437352
Effective search space used: 76884437352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)