BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0010.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242227.1| phosphate starvation-induced protein [Bacillus ... 404 e-111 ref|NP_390412.1| phosphate starvation-induced protein [Bacillus ... 383 e-105 emb|CAA12155.1| ORF4 [Bacillus megaterium] 380 e-104 ref|NP_846752.1| PhoH family protein [Bacillus anthracis str. Am... 379 e-104 ref|NP_834014.1| PhoH protein [Bacillus cereus ATCC 14579] >gi|2... 377 e-103 >ref|NP_242227.1| phosphate starvation-induced protein [Bacillus halodurans] pir||A83820 phosphate starvation-induced protein phoH [imported] - Bacillus halodurans (strain C-125) dbj|BAB05080.1| phosphate starvation-induced protein [Bacillus halodurans] Length = 320 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/305 (63%), Positives = 248/305 (81%) Query: 1 LQNAGEAQSLFGPQDGFLKIIESEIPAVIDSREAEITIRGAEREVDMLGQLFGVLLSLIR 60 +++ E Q+LFGP+D L+ +E + I +R ++++ G E ++ ++ + L+ LIR Sbjct: 11 VKDTQETQALFGPKDAHLQRLEEYLQVSIVTRGEQVSVTGEEGKITLVEHVLSALIELIR 70 Query: 61 SGYILSERDIQYAVELAKDFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRD 120 +G LSERD+ YAV+LA+ + D+L ++++ ITT +GK IR KT+GQ+HYV TIK RD Sbjct: 71 NGVSLSERDVVYAVQLAEKDQLDELSEIYRENITTNIKGKAIRAKTLGQRHYVQTIKTRD 130 Query: 121 IVFGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYL 180 +VFGIGPAGTGKTYLAVV+AVTALK+G +KRIVLTRPAVEAGE+LGFLPGDL+EKVDPYL Sbjct: 131 LVFGIGPAGTGKTYLAVVMAVTALKDGLIKRIVLTRPAVEAGENLGFLPGDLKEKVDPYL 190 Query: 181 RPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFL 240 RPLYDAL+DV+G +Q + +ERG IE+APLAYMRGRTLDD+F+ILDEAQNTTPEQMKMFL Sbjct: 191 RPLYDALHDVLGTEQTNRLMERGTIEVAPLAYMRGRTLDDAFVILDEAQNTTPEQMKMFL 250 Query: 241 TRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKI 300 TRLGFGSKMVI GD+TQIDLP+GK+SGL A IL + E+GF+Y + DVVRH+LVQKI Sbjct: 251 TRLGFGSKMVINGDLTQIDLPKGKQSGLKVAIGILERVKEIGFIYLQQADVVRHTLVQKI 310 Query: 301 IVAYE 305 + AYE Sbjct: 311 LDAYE 315 >ref|NP_390412.1| phosphate starvation-induced protein [Bacillus subtilis] sp|P46343|PHOL_BACSU PhoH-like protein pir||E69676 phosphate starvation-induced protein phoH - Bacillus subtilis dbj|BAA12477.1| YqfE [Bacillus subtilis] emb|CAB14476.1| phosphate starvation-induced protein [Bacillus subtilis subsp. subtilis str. 168] Length = 319 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/306 (61%), Positives = 235/306 (76%) Query: 1 LQNAGEAQSLFGPQDGFLKIIESEIPAVIDSREAEITIRGAEREVDMLGQLFGVLLSLIR 60 L+N EA SLFG QD FLK++E ++ I +R I + G + + +L G LL+LIR Sbjct: 12 LKNPDEALSLFGNQDSFLKLMEKDLNLNIITRGETIYVSGDDESFQIADRLLGSLLALIR 71 Query: 61 SGYILSERDIQYAVELAKDFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRD 120 G +SERD+ YA+++AK + +++ EIT +GK IRVKT+GQ+ YV +K+ D Sbjct: 72 KGIEISERDVIYAIKMAKKNELEYFESMYEEEITKNAKGKSIRVKTMGQREYVAAMKRND 131 Query: 121 IVFGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYL 180 +VFGIGPAGTGKTYLAVV AV ALK G +K+I+LTRPAVEAGESLGFLPGDL+EKVDPYL Sbjct: 132 LVFGIGPAGTGKTYLAVVKAVHALKNGHIKKIILTRPAVEAGESLGFLPGDLKEKVDPYL 191 Query: 181 RPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFL 240 RPLYDAL+DV+G D + +ERG+IEIAPLAYMRGRTLDD+++ILDEAQNTTP QMKMFL Sbjct: 192 RPLYDALHDVLGADHTERLMERGIIEIAPLAYMRGRTLDDAYVILDEAQNTTPAQMKMFL 251 Query: 241 TRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKI 300 TRLGF SKM+ITGDV+QIDLP+G KSGL AK +L GID + + + DVVRH LV KI Sbjct: 252 TRLGFSSKMIITGDVSQIDLPKGVKSGLAVAKEMLKGIDGISMIELDQTDVVRHPLVAKI 311 Query: 301 IVAYER 306 I AY++ Sbjct: 312 IEAYDK 317 >emb|CAA12155.1| ORF4 [Bacillus megaterium] Length = 324 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/307 (60%), Positives = 234/307 (76%) Query: 1 LQNAGEAQSLFGPQDGFLKIIESEIPAVIDSREAEITIRGAEREVDMLGQLFGVLLSLIR 60 L ++ EA SLFG QD LK IE E+ I SR + + G+ V ++ ++ LL++IR Sbjct: 12 LDDSNEAISLFGVQDANLKRIEEEMQVSIISRGETVVVSGSTENVQLVEEMLKKLLNIIR 71 Query: 61 SGYILSERDIQYAVELAKDFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRD 120 +SERD+ YA++LAK + D+++ EI +GK IRVKT+GQ Y++ IKK D Sbjct: 72 KNISISERDVVYAIQLAKKNSLEFFEDVYEEEIGKNVKGKTIRVKTLGQSQYISAIKKND 131 Query: 121 IVFGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYL 180 +VFGIGPAGTGKTYLAVV+AV ALK G V+RI+LTRPAVEAGESLGFLPGDL+EKVDPYL Sbjct: 132 LVFGIGPAGTGKTYLAVVMAVNALKNGHVQRIILTRPAVEAGESLGFLPGDLKEKVDPYL 191 Query: 181 RPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFL 240 RPLYDAL+DV+G + + +ERG+IEIAPLAYMRGRTLDD+F+ILDEAQNTT QMKMFL Sbjct: 192 RPLYDALHDVLGTEHTQRLIERGVIEIAPLAYMRGRTLDDAFVILDEAQNTTMAQMKMFL 251 Query: 241 TRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKI 300 TRLGFGSKMVITGD++QIDLP+G +SGL IL+ + + FV+ + DVVRH LV +I Sbjct: 252 TRLGFGSKMVITGDISQIDLPKGAQSGLAAVSKILTNVKGISFVHLEQSDVVRHPLVGRI 311 Query: 301 IVAYERS 307 I AYE++ Sbjct: 312 IQAYEQA 318 >ref|NP_846752.1| PhoH family protein [Bacillus anthracis str. Ames] gb|AAP28238.1| PhoH family protein [Bacillus anthracis str. Ames] Length = 319 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/306 (60%), Positives = 236/306 (77%) Query: 1 LQNAGEAQSLFGPQDGFLKIIESEIPAVIDSREAEITIRGAEREVDMLGQLFGVLLSLIR 60 L+N EA +LFG D LK+IE E+ I +R + + GA V ++ ++ LL +IR Sbjct: 12 LENTNEAIALFGVNDAHLKVIERELNVSIITRGETVHVSGAVETVTLVEKILQQLLVVIR 71 Query: 61 SGYILSERDIQYAVELAKDFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRD 120 G ++ERD+ YA++LA+ + Q +L++ EI T +GK IRVKT+GQ+ Y+ +KK D Sbjct: 72 KGVSITERDVAYAIQLAQQGKIAQFEELYEEEIFKTAKGKSIRVKTMGQRRYIHAMKKND 131 Query: 121 IVFGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYL 180 IVFGIGPAGTGKTYLAVV+AV ALK+G VK+I+LTRPAVEAGESLGFLPGDL+EKVDPYL Sbjct: 132 IVFGIGPAGTGKTYLAVVMAVRALKQGYVKKIILTRPAVEAGESLGFLPGDLKEKVDPYL 191 Query: 181 RPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFL 240 RPLYDAL+D++G + + +ERG+IEIAPLAYMRGRTLDDSF+ILDEAQNTT Q+KMFL Sbjct: 192 RPLYDALHDILGQEYTQRMMERGVIEIAPLAYMRGRTLDDSFVILDEAQNTTGAQIKMFL 251 Query: 241 TRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKI 300 TRLGF SKMVITGD +Q+DLP+G KSGL A ILSG+ L F+ + DVVRH LVQ+I Sbjct: 252 TRLGFSSKMVITGDPSQVDLPKGVKSGLTLASNILSGVSGLSFITLEQTDVVRHPLVQRI 311 Query: 301 IVAYER 306 I AY++ Sbjct: 312 IEAYDK 317 >ref|NP_834014.1| PhoH protein [Bacillus cereus ATCC 14579] gb|AAP11215.1| PhoH protein [Bacillus cereus ATCC 14579] Length = 319 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/306 (60%), Positives = 236/306 (77%) Query: 1 LQNAGEAQSLFGPQDGFLKIIESEIPAVIDSREAEITIRGAEREVDMLGQLFGVLLSLIR 60 L+NA EA +LFG D LK+IE E+ I +R + + GA V ++ ++ LL +IR Sbjct: 12 LENANEAIALFGVNDAHLKVIERELNVSIVTRGETVHVSGAVETVALVEKILQQLLVVIR 71 Query: 61 SGYILSERDIQYAVELAKDFRADQLLDLFKGEITTTFRGKPIRVKTIGQKHYVTTIKKRD 120 +SERD+ YA++LA+ + Q +L++ EI T +GK IRVKT+GQ+ Y+ +KK D Sbjct: 72 KSISISERDVAYAIQLAQQGKIAQFEELYEEEIFKTAKGKSIRVKTMGQRRYIHAMKKND 131 Query: 121 IVFGIGPAGTGKTYLAVVLAVTALKEGSVKRIVLTRPAVEAGESLGFLPGDLQEKVDPYL 180 IVFGIGPAGTGKTYLAVV+AV ALK+G VK+I+LTRPAVEAGE+LGFLPGDL+EKVDPYL Sbjct: 132 IVFGIGPAGTGKTYLAVVMAVRALKQGYVKKIILTRPAVEAGENLGFLPGDLKEKVDPYL 191 Query: 181 RPLYDALYDVMGPDQVAKALERGLIEIAPLAYMRGRTLDDSFIILDEAQNTTPEQMKMFL 240 RPLYDAL+D++G + + +ERG+IEIAPLAYMRGRTLDDSF+ILDEAQNTT Q+KMFL Sbjct: 192 RPLYDALHDILGQEYTQRMMERGVIEIAPLAYMRGRTLDDSFVILDEAQNTTGAQIKMFL 251 Query: 241 TRLGFGSKMVITGDVTQIDLPRGKKSGLIEAKTILSGIDELGFVYFAEQDVVRHSLVQKI 300 TRLGF SKMVITGD +Q+DLP+G KSGL A ILSG+ L F+ + DVVRH LVQ+I Sbjct: 252 TRLGFSSKMVITGDPSQVDLPKGVKSGLSIAANILSGVSGLSFITLEQTDVVRHPLVQRI 311 Query: 301 IVAYER 306 I AY++ Sbjct: 312 IEAYDK 317 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.140 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 424,649,352 Number of extensions: 17375056 Number of successful extensions: 63233 Number of sequences better than 1.0e-05: 755 Number of HSP's gapped: 62932 Number of HSP's successfully gapped: 755 Length of query: 312 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 187 Effective length of database: 417,850,203 Effective search space: 78137987961 Effective search space used: 78137987961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)