BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0112.0008.p
         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_658339.1| hypothetical protein predicted by GeneMark [Bac...    91   8e-18
ref|NP_980681.1| conserved hypothetical protein [Bacillus cereus...    91   9e-18
ref|NP_242225.1| BH1359~unknown conserved protein [Bacillus halo...    90   1e-17
ref|NP_834016.1| hypothetical Cytosolic Protein [Bacillus cereus...    90   2e-17
emb|CAA12153.1| ORF3 [Bacillus megaterium]                             87   9e-17

>ref|NP_658339.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_846755.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP28241.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 97

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 62/90 (68%)

Query: 7  RLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNGSLEISG 66
          +++ W    +DLP DVL +LPRITL+G   +YIENHRG+L FS +++RL L +G L I G
Sbjct: 6  QMKNWLTKQIDLPVDVLMDLPRITLVGQVHIYIENHRGLLVFSDKEVRLLLKHGQLLIKG 65

Query: 67 EGLVIRNILGQELAVEGIIGEIRYKGSEEN 96
          +  VI+ IL +EL +EGII ++ +   E+ 
Sbjct: 66 QSFVIKTILPEELLLEGIIEQVTFLEDEQK 95


>ref|NP_980681.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43289.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 122

 Score = 90.9 bits (224), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 62/90 (68%)

Query: 7   RLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNGSLEISG 66
           +++ W    +DLP DVL +LPRITL+G   +YIENHRG+L FS +++RL L +G L I G
Sbjct: 31  QMKNWLTKQIDLPVDVLMDLPRITLVGQVHIYIENHRGLLVFSDKEVRLLLKHGQLLIKG 90

Query: 67  EGLVIRNILGQELAVEGIIGEIRYKGSEEN 96
           +  VI+ IL +EL +EGII ++ +   E+ 
Sbjct: 91  QSFVIKTILPEELLLEGIIEQVTFLEDEQK 120


>ref|NP_242225.1| BH1359~unknown conserved protein [Bacillus halodurans]
 pir||G83819 hypothetical protein BH1359 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB05078.1| BH1359~unknown conserved protein [Bacillus halodurans]
          Length = 97

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 62/90 (68%)

Query: 1  MTRIGRRLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNG 60
          M  + ++L  W    L LP DV+ +LPRIT+IG   +YIENH+GVL FS+++LRL L +G
Sbjct: 1  MKNVKQQLMRWMTNQLQLPADVMMDLPRITMIGQLHIYIENHQGVLRFSNQELRLLLKHG 60

Query: 61 SLEISGEGLVIRNILGQELAVEGIIGEIRY 90
           L I G+G VI+ IL +EL +EG I ++ +
Sbjct: 61 QLLIKGDGFVIKTILPEELLLEGRIDQVLF 90


>ref|NP_834016.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gb|AAP11217.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
          Length = 97

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 63/90 (70%)

Query: 7  RLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNGSLEISG 66
          +++ W    +DLP DVL +LPRITL+G   +YIENHRG+L FS +++RL L +G L I G
Sbjct: 6  QMKNWLTKQVDLPVDVLMDLPRITLVGQIHIYIENHRGLLVFSDKEVRLLLKHGQLLIKG 65

Query: 67 EGLVIRNILGQELAVEGIIGEIRYKGSEEN 96
          +  VI+ IL +EL +EGII ++ +  +E+ 
Sbjct: 66 QSFVIKTILPEELLLEGIIEQVTFLENEKK 95


>emb|CAA12153.1| ORF3 [Bacillus megaterium]
          Length = 94

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 59/84 (70%)

Query: 7  RLRGWTNGVLDLPQDVLQELPRITLIGNKELYIENHRGVLHFSSEQLRLALVNGSLEISG 66
          +++ W    ++LP DVL +LPRITL+G   +YIENH+G+L FS  ++R+ L  G + I G
Sbjct: 8  QMKRWMTKTMELPADVLMDLPRITLVGQIHIYIENHKGLLAFSDTEIRVLLKQGQMLIRG 67

Query: 67 EGLVIRNILGQELAVEGIIGEIRY 90
          EGLVI+ IL +EL +EG I ++ Y
Sbjct: 68 EGLVIKVILPEELVLEGKINQVLY 91


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.141    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 145,581,935
Number of extensions: 5505798
Number of successful extensions: 12229
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 12229
Number of HSP's successfully gapped: 12
Length of query: 97
Length of database: 757,237,578
Length adjustment: 65
Effective length of query: 32
Effective length of database: 580,756,143
Effective search space: 18584196576
Effective search space used: 18584196576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)