BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0112.0004.p (99 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00062287.1| COG1610: Uncharacterized conserved protein [C... 127 8e-29 ref|ZP_00035484.1| COG1610: Uncharacterized conserved protein [E... 124 6e-28 ref|NP_242221.1| BH1355~unknown conserved protein [Bacillus halo... 119 2e-26 ref|NP_816064.1| conserved hypothetical protein [Enterococcus fa... 119 2e-26 ref|NP_390418.1| similar to hypothetical proteins [Bacillus subt... 119 2e-26 >ref|ZP_00062287.1| COG1610: Uncharacterized conserved protein [Clostridium thermocellum ATCC 27405] Length = 174 Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 56/98 (57%), Positives = 84/98 (85%) Query: 1 VLDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQ 60 +L+++++E+K+RKD+L E+E +GR +L + K EI+++MKYLP+QL+E+EI+ IV++TI Sbjct: 76 ILEVIAKEVKKRKDSLTEYEKSGRQDLIDALKTEIDVLMKYLPEQLTEDEIEAIVKETIN 135 Query: 61 ETGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFL 98 ETGASS ++GKVM A++PKVKGRADGKLVNQ V ++L Sbjct: 136 ETGASSAGDIGKVMKAVLPKVKGRADGKLVNQIVRKYL 173 >ref|ZP_00035484.1| COG1610: Uncharacterized conserved protein [Enterococcus faecium] Length = 148 Score = 124 bits (311), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 60/98 (61%), Positives = 77/98 (78%) Query: 2 LDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQE 61 L +LSRE+KQR+D+L EFE AGRD+LA K+EI I+ KY+P+QLS+EEI+ +VQ+ I + Sbjct: 50 LTVLSREMKQRRDSLHEFEEAGRDDLAEKVKSEIVIVEKYMPEQLSDEEIRQLVQEAITQ 109 Query: 62 TGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFLQ 99 TGASS E GKVM A+MPKVKG+ADG VN V + LQ Sbjct: 110 TGASSMKEFGKVMGAIMPKVKGKADGNQVNAIVKELLQ 147 >ref|NP_242221.1| BH1355~unknown conserved protein [Bacillus halodurans] pir||C83819 hypothetical protein BH1355 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05074.1| BH1355~unknown conserved protein [Bacillus halodurans] Length = 147 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/97 (59%), Positives = 76/97 (78%) Query: 2 LDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQE 61 L +L+RE+KQRKD+LQEFE A R++L + EI I+ Y+P+QLSE+E+ IV +TI E Sbjct: 50 LTVLNRELKQRKDSLQEFEKANREDLVEKLRNEISILEHYMPEQLSEDELLAIVNETIAE 109 Query: 62 TGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFL 98 GASSK++MGKVM A+MPKVKG+ADG LVN+ V Q L Sbjct: 110 VGASSKADMGKVMGAIMPKVKGKADGGLVNRLVQQQL 146 >ref|NP_816064.1| conserved hypothetical protein [Enterococcus faecalis V583] gb|AAO82134.1| conserved hypothetical protein [Enterococcus faecalis V583] Length = 149 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/98 (58%), Positives = 74/98 (75%) Query: 2 LDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQE 61 L +LSRE+KQRKD+L EFE AGRD+L K EI I+ KY+P QL+EEEI+ +VQ+ + + Sbjct: 50 LTVLSREMKQRKDSLSEFEKAGRDDLVEKVKVEIAIVEKYMPQQLTEEEIRQLVQEVMTQ 109 Query: 62 TGASSKSEMGKVMSALMPKVKGRADGKLVNQAVLQFLQ 99 TGA+S + GKVM A+MPKVKG+ADG VN V + LQ Sbjct: 110 TGATSPKDFGKVMGAMMPKVKGKADGNQVNAIVKELLQ 147 >ref|NP_390418.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54464|YQEY_BACSU Hypothetical protein yqeY pir||G69952 conserved hypothetical protein yqeY - Bacillus subtilis pdb|1NG6|A Chain A, Structure Of Hypothetical Cytosolic Protein Yqey dbj|BAA12471.1| YqeY [Bacillus subtilis] emb|CAB14482.1| yqeY [Bacillus subtilis subsp. subtilis str. 168] Length = 148 Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 56/93 (60%), Positives = 75/93 (80%) Query: 2 LDILSREIKQRKDALQEFESAGRDELAASTKAEIEIIMKYLPDQLSEEEIKVIVQQTIQE 61 L +LSRE+KQRKD+LQEF +A R +L + E++I+ YLP+QLSEEE++ IV +TI E Sbjct: 51 LTVLSRELKQRKDSLQEFSNANRLDLVDKVQKELDILEVYLPEQLSEEELRTIVNETIAE 110 Query: 62 TGASSKSEMGKVMSALMPKVKGRADGKLVNQAV 94 GASSK++MGKVM A+MPKVKG+ADG L+N+ V Sbjct: 111 VGASSKADMGKVMGAIMPKVKGKADGSLINKLV 143 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.311 0.128 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 107,092,785 Number of extensions: 3133467 Number of successful extensions: 13164 Number of sequences better than 1.0e-05: 393 Number of HSP's gapped: 13158 Number of HSP's successfully gapped: 393 Length of query: 99 Length of database: 757,237,578 Length adjustment: 66 Effective length of query: 33 Effective length of database: 578,041,044 Effective search space: 19075354452 Effective search space used: 19075354452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 120 (50.8 bits)