BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0021.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244278.1| BH3411~unknown conserved protein in others [Bac... 487 e-136 ref|NP_213448.1| hypothetical protein [Aquifex aeolicus] >gi|744... 343 4e-93 ref|NP_294089.1| conserved hypothetical protein [Deinococcus rad... 340 4e-92 gb|EAJ72785.1| unknown [environmental sequence] 330 4e-89 ref|NP_865132.1| conserved hypothetical protein [Pirellula sp. 1... 327 4e-88 >ref|NP_244278.1| BH3411~unknown conserved protein in others [Bacillus halodurans] pir||C84076 hypothetical protein BH3411 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07130.1| BH3411~unknown conserved protein in others [Bacillus halodurans] Length = 364 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 220/359 (61%), Positives = 295/359 (82%) Query: 9 TDARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIENMSLY 68 TD ++ I +KV GERL +EDG+YLY ++DLL + QLAN+VN KNG+ VYFIENM + Sbjct: 6 TDTKLQEIQEKVEHGERLTIEDGLYLYETSDLLGVAQLANKVNSEKNGDHVYFIENMYIN 65 Query: 69 FTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDKVPFQY 128 TNVCEA+C+FC F++ G+EGAYT+ + +++YVE+ + +REFHIVGGHN VPF Y Sbjct: 66 PTNVCEANCSFCGFKRKPGQEGAYTMDSETLLRYVEERWNDNIREFHIVGGHNTDVPFDY 125 Query: 129 YVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGGAEILS 188 Y+D+++ L + FPQVT+KAYT AEI+FF+R++G+S++EVLEEL AGL +L GGGAEIL+ Sbjct: 126 YLDTIRTLKKNFPQVTVKAYTGAEIEFFSRLAGISMKEVLEELIKAGLDTLPGGGAEILT 185 Query: 189 DQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRDLQDET 248 ++YR KM +KA+ +++LE H AH LG+KTH TMLYGSIES+E+R+ HM ++R LQD+T Sbjct: 186 ERYRAKMSPDKASTDQWLEAHEIAHGLGLKTHATMLYGSIESNEERLIHMDRVRQLQDKT 245 Query: 249 NGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGPQLTQV 308 NG+MVFIPL+MQP++ AG+ RR SA++D++TIAISRLMLDN DHIKAY+INIG QLTQ+ Sbjct: 246 NGYMVFIPLAMQPRSVKAGLKRRTSAFDDMRTIAISRLMLDNIDHIKAYWINIGVQLTQM 305 Query: 309 ALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNEIKVY 367 AL+FG+ D+HGT+++ERISH+ GALT +G+TR+ELI L+K A K PVERDTFYN IK Y Sbjct: 306 ALTFGSDDIHGTLIEERISHSVGALTSQGITRDELIHLIKSANKTPVERDTFYNIIKSY 364 >ref|NP_213448.1| hypothetical protein [Aquifex aeolicus] pir||D70357 conserved hypothetical protein aq_648 - Aquifex aeolicus gb|AAC06853.1| hypothetical protein [Aquifex aeolicus VF5] Length = 371 Score = 343 bits (880), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 176/368 (47%), Positives = 241/368 (65%), Gaps = 1/368 (0%) Query: 1 MSTLITPQTDARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVY 60 + T+ D I DKV +R+N E+ +YLY SN+L +G LA +N++KNG Y Sbjct: 5 VETVFQTVRDKEFLRIADKVLNEKRINQEEALYLYRSNELTALGLLAEYINRKKNGMYAY 64 Query: 61 FIENMSLYFTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGH 120 FI N + TNVC C FC F + AY +S +E+++ VE+ G RE HIVGG Sbjct: 65 FIVNRQINPTNVCMYQCDFCAFGVKKSDPKAYEMSMEEILKKVEELYLMGGREVHIVGGI 124 Query: 121 NDKVPFQYYVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLT 180 + YV ++ + + FP++ +KA+TA EI +ISG S EVL EL+ AGL +L Sbjct: 125 PSYWDYDKYVSIVREIKKRFPEIIIKAWTAVEIHHMAKISGKSYEEVLSELKEAGLDALP 184 Query: 181 GGGAEILSDQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQ 240 GGGAEI S++ RK + KAN EEYLEVHR AH+LG+ ++ TMLYG +E+ E+RV HM Sbjct: 185 GGGAEIFSERVRKIIAPYKANAEEYLEVHRVAHKLGIPSNATMLYGHVETLEERVEHMEM 244 Query: 241 IRDLQDETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFIN 300 +R LQDET GF VFIPL+ P+ G R S+ +DLKTIAISR+ LDNFDHIKAY++ Sbjct: 245 LRRLQDETGGFQVFIPLAYWPEGTRLG-GTRTSSVDDLKTIAISRIYLDNFDHIKAYWVT 303 Query: 301 IGPQLTQVALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTF 360 +G ++ QVAL+FGA D+ GTI +E+I HAAG + G + ++L+ L+K AGK P ERDTF Sbjct: 304 LGEKVAQVALNFGADDLDGTIQEEKIVHAAGTKSAYGHSVDKLVNLIKKAGKTPAERDTF 363 Query: 361 YNEIKVYE 368 Y ++VY+ Sbjct: 364 YRVVRVYD 371 >ref|NP_294089.1| conserved hypothetical protein [Deinococcus radiodurans] pir||A75527 conserved hypothetical protein - Deinococcus radiodurans (strain R1) gb|AAF09948.1| conserved hypothetical protein [Deinococcus radiodurans] Length = 376 Score = 340 bits (871), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 247/362 (68%), Gaps = 4/362 (1%) Query: 10 DARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIENMSLYF 69 D +A I++KV G+RL ++G+ L+ + DL T+ +LA+ ++ +G+KV+F+ +M L F Sbjct: 6 DPGLAPIVEKVEAGQRLTFDEGMQLFHTRDLNTLMRLADLQKRQLHGDKVFFVHSMRLEF 65 Query: 70 TNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDKVPFQYY 129 TN+C C FC F GEE A+ E+V V + PG+ E H+ GH+ ++YY Sbjct: 66 TNICYVGCTFCAFAARKGEERAWDYDPDEVVAQVGRRYLPGITELHMSSGHHPNHKWEYY 125 Query: 130 VDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGGAEILSD 189 ++ L EA+P + +KA+TAAEI+ ++IS REVL EL+AAGL ++ GGGAEI +D Sbjct: 126 PAMVQKLREAYPDLQVKAFTAAEIEHLSKISKKPTREVLAELQAAGLSAMPGGGAEIFAD 185 Query: 190 QYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRDLQDETN 249 + RK++ NK E++L++HR AH+LGM+T+ TMLYG IE+ E+R+ HM ++R+LQD+T Sbjct: 186 RVRKQVAKNKVKAEKWLQIHREAHELGMRTNATMLYGHIETLEERLDHMHRLRELQDQTG 245 Query: 250 GFMVFIPLSMQPKN----KNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGPQL 305 GF FIPL+ QP +N G + +DL+ +A++R+ LDNF HIK Y++ IG +L Sbjct: 246 GFHAFIPLAFQPLGNTLAQNLGKTEYTTGLDDLRNLAVARIYLDNFPHIKGYWVMIGSEL 305 Query: 306 TQVALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNEIK 365 TQV+L +G SD+ GTI +E I+HAAGA +P L++ ++ +++ AG++PV RD +YNE++ Sbjct: 306 TQVSLDWGVSDIDGTIQEEHIAHAAGATSPMALSQAGMVKMIQSAGRVPVLRDAYYNELE 365 Query: 366 VY 367 V+ Sbjct: 366 VF 367 >gb|EAJ72785.1| unknown [environmental sequence] Length = 364 Score = 330 bits (845), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 153/358 (42%), Positives = 243/358 (67%), Gaps = 5/358 (1%) Query: 10 DARMANIIDKVRGGERLNLEDGVYLYGSNDLLTIGQLANEVNQRKNGNKVYFIENMSLYF 69 D ++ NI +K++ G+RL+ +DG+ L+ ++D+ T+G+LA+ ++ +G+KVYF+ N + Sbjct: 10 DKKLNNICEKIQKGKRLDFQDGIDLFNTSDIHTLGKLADFKKRQVSGDKVYFVLNRHVNP 69 Query: 70 TNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDKVPFQYY 129 TN+C C+FC+F K G++ AY ++ +E++ ++ +H E H+VGGH+ F+YY Sbjct: 70 TNICVLSCSFCDFAKKKGDDDAYEMTVEEILNNIDDEMH----EVHMVGGHHPTWKFEYY 125 Query: 130 VDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGGAEILSD 189 ++ +K++ E +P + +K +TAAEID+F R + E L L+ AGL S+ GGGAE+ S Sbjct: 126 IEIVKSIREKYPDLHIKGFTAAEIDYFHRRWKIDPEESLSRLKEAGLTSMPGGGAEVFSP 185 Query: 190 QYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRDLQDETN 249 + K + K+ + E+H+ AH+ G+K++ TMLYG IE+ E+RV H +Q+RDLQDETN Sbjct: 186 RVHKLLLPGKSKASRWQEIHKIAHKQGIKSNCTMLYGHIETIEERVDHFIQLRDLQDETN 245 Query: 250 GFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGPQLTQVA 309 GF+ FIPL Q + +DLK I+I+RLMLDN DHIK+Y++ IG + + Sbjct: 246 GFLAFIPLQYQTGTTQL-TDSPATPIDDLKMISIARLMLDNVDHIKSYWVTIGEETASIG 304 Query: 310 LSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNEIKVY 367 L+FGA D+ GTI+KE I HAA A +P GL R+++++L+K A K+PVERD YNE+++Y Sbjct: 305 LNFGADDLDGTIVKENIMHAAKANSPGGLARDKMVYLIKEARKLPVERDALYNEVEIY 362 >ref|NP_865132.1| conserved hypothetical protein [Pirellula sp. 1] emb|CAD72816.1| conserved hypothetical protein [Pirellula sp.] Length = 387 Score = 327 bits (837), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 161/358 (44%), Positives = 236/358 (65%), Gaps = 1/358 (0%) Query: 8 QTDARMANIIDKVRGGERLNLEDGVYLYGSN-DLLTIGQLANEVNQRKNGNKVYFIENMS 66 + DAR I DKV +RL++EDG++LY + +G+LAN V +RKNGN Y+ N Sbjct: 5 ERDARFREIRDKVESEQRLSMEDGLFLYEPEVSIQQVGELANFVRERKNGNVGYYNINTH 64 Query: 67 LYFTNVCEAHCAFCNFRKDDGEEGAYTLSGQEMVQYVEQHIHPGVREFHIVGGHNDKVPF 126 L TNVC C FC FRKD +E Y +S ++++ + G E HIVGG + + + Sbjct: 65 LNPTNVCVYRCRFCAFRKDLRDENGYAMSDEQILHRGAEATANGCTEMHIVGGLHHQRKY 124 Query: 127 QYYVDSLKALNEAFPQVTLKAYTAAEIDFFTRISGLSIREVLEELRAAGLQSLTGGGAEI 186 ++Y D + L E +P++ LKA+TA EID+F + S VL+++R+AGL S+ GGGAEI Sbjct: 125 EWYRDIISMLKENYPKIHLKAWTAVEIDWFRFQTKKSFEWVLDDMRSAGLGSMPGGGAEI 184 Query: 187 LSDQYRKKMRVNKANVEEYLEVHRTAHQLGMKTHTTMLYGSIESHEDRVRHMLQIRDLQD 246 + R ++ +KAN +LE+HRTAHQ+G+KT+ TMLYG +E R+ H++++R+LQD Sbjct: 185 FHPEVRDQLCEHKANTPAWLEIHRTAHQIGLKTNCTMLYGHVEKAYHRIDHLMRLRELQD 244 Query: 247 ETNGFMVFIPLSMQPKNKNAGIMRRNSAYEDLKTIAISRLMLDNFDHIKAYFINIGPQLT 306 +TNGF VFIPL+ P N +++ S DL+T+AISRLMLDN HIKAY+I +G + Sbjct: 245 KTNGFQVFIPLAFHPDNTKLSDLKKPSGLMDLRTMAISRLMLDNIQHIKAYWIMLGIETA 304 Query: 307 QVALSFGASDVHGTILKERISHAAGALTPEGLTREELIWLVKGAGKIPVERDTFYNEI 364 Q AL++GA D+ GT+ E I H AGA TPE ++ +++ L++ AG+ P+ERDT YN + Sbjct: 305 QTALAYGADDIDGTVRHELIYHDAGAKTPEFMSVDQIKDLIREAGRDPIERDTTYNRV 362 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 545,553,764 Number of extensions: 22666449 Number of successful extensions: 53870 Number of sequences better than 1.0e-05: 191 Number of HSP's gapped: 53623 Number of HSP's successfully gapped: 191 Length of query: 368 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 241 Effective length of database: 412,420,005 Effective search space: 99393221205 Effective search space used: 99393221205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)