BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0109.0019.p
         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244281.1| BH3414~unknown conserved protein in B. subtilis...    64   9e-10
ref|NP_391099.1| yuzB [Bacillus subtilis] >gi|7475466|pir||A7002...    62   4e-09
ref|NP_981368.1| conserved hypothetical protein [Bacillus cereus...    62   4e-09
ref|NP_764188.1| conserved hypothetical protein [Staphylococcus ...    62   4e-09
ref|NP_653404.1| hypothetical protein predicted by GeneMark [Bac...    62   4e-09

>ref|NP_244281.1| BH3414~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
 pir||F84076 hypothetical protein BH3414 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB07133.1| BH3414~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
          Length = 78

 Score = 64.3 bits (155), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 38/53 (71%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          MRP+IEFC SN+  GT+    +LE +P  D+IEYGCL++CG C    FA+++G
Sbjct: 1  MRPIIEFCLSNLASGTQKAMEELEKDPNLDIIEYGCLSHCGSCANDKFALVNG 53


>ref|NP_391099.1| yuzB [Bacillus subtilis]
 pir||A70026 hypothetical protein yuzB - Bacillus subtilis
 emb|CAB15209.1| yuzB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 78

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          M P+IEFC SN+ HG++  +  LE +P  DV+EYGCL+ CG C    FA+++G
Sbjct: 1  MNPMIEFCVSNLAHGSQEARAILEKDPNLDVLEYGCLSYCGTCMESLFALVNG 53


>ref|NP_981368.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43976.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 94

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          ++PLIEFC  N+  G++    KLE +P  DV+EYGCL  CG C+  PFA+++G
Sbjct: 17 IKPLIEFCVGNLASGSQAALEKLEKDPNLDVMEYGCLGYCGICFEGPFALVNG 69


>ref|NP_764188.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
 gb|AAO04230.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
          12228]
          Length = 81

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 37/53 (69%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          M PL+EFC SN+  G++ +  KLE +P  DV+EYGCL NCG C    +A++DG
Sbjct: 1  MFPLVEFCISNMAKGSDVVFEKLENDPNIDVLEYGCLQNCGLCASSLYALVDG 53


>ref|NP_653404.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_834609.1| hypothetical protein [Bacillus cereus ATCC 14579]
 ref|NP_847355.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP11810.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP28841.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 79

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 37/53 (69%)

Query: 1  MRPLIEFCASNIGHGTEPLKRKLELNPEYDVIEYGCLNNCGQCYLQPFAMLDG 53
          ++PLIEFC  N+  G++    KLE +P  DV+EYGCL  CG C+  PFA+++G
Sbjct: 2  IKPLIEFCVGNLASGSQAALEKLEKDPNLDVMEYGCLGYCGICFEGPFALVNG 54


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.145    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 95,055,554
Number of extensions: 2639411
Number of successful extensions: 4246
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4247
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 757,237,578
Length adjustment: 53
Effective length of query: 31
Effective length of database: 613,337,331
Effective search space: 19013457261
Effective search space used: 19013457261
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)