BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0018.p (82 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244286.1| nitrogen fixation protein (NifU protein) [Bacil... 112 2e-24 ref|NP_653418.1| NifU-like, NifU-like domain [Bacillus anthracis... 112 3e-24 ref|NP_834623.1| NifU protein [Bacillus cereus ATCC 14579] >gi|3... 112 4e-24 ref|ZP_00182096.1| hypothetical protein Exigu262501 [Exiguobacte... 109 2e-23 ref|NP_371460.1| hypothetical protein [Staphylococcus aureus sub... 105 3e-22 >ref|NP_244286.1| nitrogen fixation protein (NifU protein) [Bacillus halodurans] pir||C84077 nitrogen fixation protein (NifU protein) BH3419 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07138.1| nitrogen fixation protein (NifU protein) [Bacillus halodurans] Length = 79 Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 56/76 (73%), Positives = 63/76 (82%) Query: 7 STTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIER 66 ST M+++V EVLDKLRPFL RDGGDVEL+DVEDGIVK++L+GACGSCPSSTITLKAGIER Sbjct: 4 STEMHEQVKEVLDKLRPFLLRDGGDVELVDVEDGIVKVRLLGACGSCPSSTITLKAGIER 63 Query: 67 ALLXXXXXXXXXIQVF 82 ALL QVF Sbjct: 64 ALLEEVPGVKEIEQVF 79 >ref|NP_653418.1| NifU-like, NifU-like domain [Bacillus anthracis A2012] Length = 95 Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/78 (70%), Positives = 64/78 (82%) Query: 5 LQSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGI 64 +++ M ++VLEVLDKLRPFL RDGGDVEL+D+E+GIVKL+LMGACGSCPSSTITLKAGI Sbjct: 1 MENPHMQEQVLEVLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 65 ERALLXXXXXXXXXIQVF 82 ERALL QVF Sbjct: 61 ERALLEEVPGVIEVEQVF 78 >ref|NP_834623.1| NifU protein [Bacillus cereus ATCC 14579] ref|NP_847369.1| nifU domain protein [Bacillus anthracis str. Ames] ref|NP_981379.1| nifU domain protein [Bacillus cereus ATCC 10987] gb|AAP11824.1| NifU protein [Bacillus cereus ATCC 14579] gb|AAP28855.1| nifU domain protein [Bacillus anthracis str. Ames] gb|AAS43987.1| nifU domain protein [Bacillus cereus ATCC 10987] Length = 78 Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 55/78 (70%), Positives = 64/78 (82%) Query: 5 LQSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGI 64 +++ M ++VLEVLDKLRPFL RDGGDVEL+D+E+GIVKL+LMGACGSCPSSTITLKAGI Sbjct: 1 MENPHMQEQVLEVLDKLRPFLLRDGGDVELVDIEEGIVKLRLMGACGSCPSSTITLKAGI 60 Query: 65 ERALLXXXXXXXXXIQVF 82 ERALL QVF Sbjct: 61 ERALLEEVPGVIEVEQVF 78 >ref|ZP_00182096.1| hypothetical protein Exigu262501 [Exiguobacterium sp. 255-15] Length = 79 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/60 (88%), Positives = 58/60 (96%) Query: 10 MYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIERALL 69 M+D+V EVL+KLRPFL RDGGDVEL+DVEDGIVKL+LMGACGSCPSSTITLKAGIERALL Sbjct: 7 MFDQVNEVLEKLRPFLLRDGGDVELVDVEDGIVKLRLMGACGSCPSSTITLKAGIERALL 66 >ref|NP_371460.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374058.1| hypothetical protein, similar to nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus N315] ref|NP_645635.1| ORFID:MW0818~hypothetical protein, similar to nitrogen fixation protein NifU [Staphylococcus aureus subsp. aureus MW2] pir||A89860 hypothetical protein SA0797 [imported] - Staphylococcus aureus (strain N315) dbj|BAB42036.1| SA0797 [Staphylococcus aureus subsp. aureus N315] dbj|BAB57098.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94683.1| MW0818 [Staphylococcus aureus subsp. aureus MW2] Length = 80 Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/77 (67%), Positives = 60/77 (77%) Query: 6 QSTTMYDEVLEVLDKLRPFLQRDGGDVELIDVEDGIVKLKLMGACGSCPSSTITLKAGIE 65 + TTM+D+V EV+++LRPFL RDGGD LIDVEDGIVKL+L GACG+CPSSTITLKAGIE Sbjct: 4 EDTTMFDQVAEVIERLRPFLLRDGGDCSLIDVEDGIVKLQLHGACGTCPSSTITLKAGIE 63 Query: 66 RALLXXXXXXXXXIQVF 82 RAL QVF Sbjct: 64 RALHEEVPGVIEVEQVF 80 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 92,331,464 Number of extensions: 2861344 Number of successful extensions: 9648 Number of sequences better than 1.0e-05: 391 Number of HSP's gapped: 9649 Number of HSP's successfully gapped: 391 Length of query: 82 Length of database: 757,237,578 Length adjustment: 52 Effective length of query: 30 Effective length of database: 616,052,430 Effective search space: 18481572900 Effective search space used: 18481572900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)