BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0109.0015.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_638976.1| ABC transporter ATP-binding protein [Xanthomona... 338 1e-91 ref|NP_244348.1| ABC transporter (ATP-binding protein) [Bacillus... 338 1e-91 ref|NP_643976.1| ABC transporter ATP-binding protein [Xanthomona... 333 4e-90 ref|NP_254190.1| probable ATP-binding component of ABC transport... 332 6e-90 ref|NP_794993.1| D-methionine ABC transporter, ATP-binding prote... 332 7e-90 >ref|NP_638976.1| ABC transporter ATP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM42900.1| ABC transporter ATP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 335 Score = 338 bits (867), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 181/337 (53%), Positives = 225/337 (66%), Gaps = 8/337 (2%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I+ + L K Y + +AL L+L I GE+FG+IGHSGAGKSTLIR IN LE PT G Sbjct: 1 MIQFQRLHKSYTVDGRQIVALHPLDLRIGPGEVFGIIGHSGAGKSTLIRLINRLEEPTGG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 + + ++T+L+ L+ RR++GMIFQHFNLLSS TV N+AFPL LAGTP+A+I+ + Sbjct: 61 RLLIGDEDVTALNSTGLRALRRRVGMIFQHFNLLSSRTVAGNVAFPLELAGTPRAEIDAR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 H+ KYPAQLSGGQKQRVG+ARALA+ P +LLCDEATSALDPQTT S+L Sbjct: 121 VAELLARVGLEQHATKYPAQLSGGQKQRVGIARALATRPQILLCDEATSALDPQTTASVL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 +LL INR+ LTIVLITHEM VI+ +CDRVAV+ G +VE G V +VFL PQH T+ F Sbjct: 181 QLLAQINRELGLTIVLITHEMEVIRRVCDRVAVLDAGKLVETGPVTEVFLHPQHPTTRRF 240 Query: 241 IRSENQH--EGPLRVALEAVHDKYSKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGTI 298 + SE +H E L EAV + V++TFLG TYE L + R TGVD+ IL G + Sbjct: 241 V-SEAEHVDEAELHRDFEAVGGRI---VRLTFLGNGTYEPVLGRIARETGVDYNILSGRV 296 Query: 299 STIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVE 335 IKD PYGQL V G Q A A A G+ VE Sbjct: 297 DRIKDTPYGQLTVALTGGDQ--NAARAGFVAAGVHVE 331 >ref|NP_244348.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||A84085 ABC transporter (ATP-binding protein) BH3481 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07200.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 338 Score = 338 bits (866), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 173/338 (51%), Positives = 230/338 (68%), Gaps = 2/338 (0%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I L G+ KV+ + A+ G+NL I +GEIFGVIG+SGAGKSTLIR +N+LERPTEG Sbjct: 1 MISLDGIRKVFKAKRGSVTAVDGVNLKINEGEIFGVIGYSGAGKSTLIRMLNMLERPTEG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 V V G +L+ LS L+ +R+KIGMIFQHFNLL S TV NIAFPL +AG PK + E++ Sbjct: 61 SVIVAGKDLSKLSDRDLRIERQKIGMIFQHFNLLWSRTVRKNIAFPLEIAGVPKKEREKR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 YP+QLSGGQKQRVG+ARALA++P VLLCDEATSALDP+TTDSIL Sbjct: 121 VDELINLVGLEGREEAYPSQLSGGQKQRVGIARALANNPKVLLCDEATSALDPKTTDSIL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 LL+DIN K LTIVLITHEMHVI+ IC RVAV+ G +VE+G V DVF KP+ +TK+F Sbjct: 181 DLLVDINEKLGLTIVLITHEMHVIRKICHRVAVMEAGKVVEEGPVLDVFRKPKEHITKEF 240 Query: 241 IRSENQHEGPLRVALEAVHDKYSKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGTIST 300 ++ + E ++ L V K + V++TF+G+ + +++++R VD ILQG IS Sbjct: 241 VKQVTEPEETVQHLLNEV--KSGRIVQLTFVGESAEKPLITNLIRTFAVDVNILQGKISK 298 Query: 301 IKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVFA 338 ++ YG L + +G +E + + Q L++EV A Sbjct: 299 TQEGSYGTLFIHLDGPKDEIEKAITYMHEQQLELEVIA 336 >ref|NP_643976.1| ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM38512.1| ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306] Length = 335 Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 178/337 (52%), Positives = 224/337 (66%), Gaps = 8/337 (2%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +I+ + L K Y + +AL L+L I GE+FG+IGHSGAGKSTLIR IN LE P+ G Sbjct: 1 MIQFQRLHKSYSVDGRQIVALHPLDLRIGPGEVFGIIGHSGAGKSTLIRLINRLEEPSGG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGTPKAQIERK 120 + + ++T+L + L+ RR+IGMIFQHFNLLSS TV N+AFPL LAGTP+A+I+ + Sbjct: 61 RLLIGEEDVTALDRQGLRALRRRIGMIFQHFNLLSSRTVAGNVAFPLELAGTPRAEIDAR 120 Query: 121 XXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSIL 180 H+ KYPAQLSGGQKQRVG+ARALA+ P +LLCDEATSALDPQTT S+L Sbjct: 121 VAELLARVGLQEHANKYPAQLSGGQKQRVGIARALATRPQILLCDEATSALDPQTTASVL 180 Query: 181 RLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKDF 240 +LL INR+ LTIVLITHEM VI+ +CDRVAV+ G +VE G V +VFL P+H T+ F Sbjct: 181 QLLAQINRELGLTIVLITHEMDVIRRVCDRVAVLDAGKLVETGPVTEVFLHPKHATTRRF 240 Query: 241 IRSENQH--EGPLRVALEAVHDKYSKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGTI 298 + SE +H E L AV + V++TFLG TYE L + R TGVD+ IL G + Sbjct: 241 V-SEAEHVDEAELHRDFAAVGGRI---VRLTFLGNGTYEPVLGRIARETGVDYNILSGRV 296 Query: 299 STIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVE 335 IKD PYGQL+V G A A A G+ VE Sbjct: 297 DRIKDTPYGQLIVALTGGDH--NAARAGFVAAGVQVE 331 >ref|NP_254190.1| probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PA01] ref|ZP_00140337.1| COG1135: ABC-type metal ion transport system, ATPase component [Pseudomonas aeruginosa UCBPP-PA14] pir||C82957 probable ATP-binding component of ABC transporter PA5503 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08888.1| probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] Length = 335 Score = 332 bits (852), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 177/342 (51%), Positives = 229/342 (66%), Gaps = 13/342 (3%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +IE + K Y + AL L+I+ G+IFG+IGHSGAGKSTL+R IN LE P+ G Sbjct: 1 MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAGT-PKAQIER 119 + V+G ++T+L L+ R+++GMIFQHFNLLSS TV DNIA PLRLAG +A+++ Sbjct: 61 RILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDA 120 Query: 120 KXXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSI 179 + H+RKYPAQLSGGQKQRVG+ARALA P +LLCDEATSALDPQTT S+ Sbjct: 121 RVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASV 180 Query: 180 LRLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKD 239 L+LL +INR+ LTIVLITHEM VI+ +CD+VAV+ GG IVEQG+VADVFL PQH T+ Sbjct: 181 LQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRR 240 Query: 240 FIRSENQHEGPLRVALEAVHDKYSKS----VKITFLGQKTYESTLSHVVRGTGVDFAILQ 295 F+ RV + HD ++ +++TF G+ TY L V R TGVD++IL Sbjct: 241 FVFEAE------RVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILS 294 Query: 296 GTISTIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 G I IKD PYGQL + G +EA +++L A + VEV Sbjct: 295 GRIDRIKDTPYGQLTLALVGG--DLEAAMSQLNAADVHVEVL 334 >ref|NP_794993.1| D-methionine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO58688.1| D-methionine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 335 Score = 332 bits (851), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 175/339 (51%), Positives = 226/339 (66%), Gaps = 7/339 (2%) Query: 1 LIELKGLTKVYGKGSKAAMALSGLNLSIKKGEIFGVIGHSGAGKSTLIRCINLLERPTEG 60 +IE + K Y K AL NL + G++FG+IGHSGAGKSTL+R IN LE P+ G Sbjct: 1 MIEFHNVHKTYRVAGKEIPALHPTNLRVDDGQVFGIIGHSGAGKSTLLRLINRLETPSGG 60 Query: 61 EVWVDGVELTSLSQGQLQEQRRKIGMIFQHFNLLSSATVYDNIAFPLRLAG-TPKAQIER 119 ++ VDG ++T+L L+ R+++GMIFQHFNLL+S TV DN+A PL LAG P+ QI++ Sbjct: 61 QIVVDGEDVTALDANGLRRFRQQVGMIFQHFNLLASRTVADNVAMPLTLAGDMPRKQIDQ 120 Query: 120 KXXXXXXXXXXXXHSRKYPAQLSGGQKQRVGVARALASDPDVLLCDEATSALDPQTTDSI 179 + H++KYPAQLSGGQKQRVG+ARALA+ P +LLCDEATSALDPQTT S+ Sbjct: 121 RVAELLERVGLSDHAKKYPAQLSGGQKQRVGIARALATKPKILLCDEATSALDPQTTASV 180 Query: 180 LRLLLDINRKFHLTIVLITHEMHVIQSICDRVAVIHGGGIVEQGEVADVFLKPQHEVTKD 239 L+LL +INR+ LTIVLITHEM VI+ +CD+VAV+ G IVEQG+VADVFL PQH TK Sbjct: 181 LQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDAGVIVEQGKVADVFLHPQHSTTKR 240 Query: 240 FIRSENQ-HEGPLRVALEAVHDKYSKSVKITFLGQKTYESTLSHVVRGTGVDFAILQGTI 298 F++ ++Q E R V + V++TF G TY L V R TGVD++IL G I Sbjct: 241 FVQEDDQVDENEQRDDFAHVQ---GRIVRLTFQGDATYAPLLGTVARETGVDYSILAGRI 297 Query: 299 STIKDVPYGQLLVRFEGSAQAVEATLAELAAQGLDVEVF 337 IKD PYGQL + G ++A A A + +EV Sbjct: 298 DRIKDTPYGQLTLAITGG--DMDAAFARFTAADVHMEVL 334 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 433,017,616 Number of extensions: 16043817 Number of successful extensions: 116834 Number of sequences better than 1.0e-05: 20461 Number of HSP's gapped: 93026 Number of HSP's successfully gapped: 22027 Length of query: 338 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 212 Effective length of database: 415,135,104 Effective search space: 88008642048 Effective search space used: 88008642048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)