BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0011.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_105641.1| oxidoreductase, (N5,N10-methylenetetrahydrometh... 139 3e-32 ref|NP_437669.1| putative oxidoreductase protein [Sinorhizobium ... 138 5e-32 gb|AAB94650.1| N5,N10-methylenetetrahydromethanopterin reductase... 129 3e-29 ref|NP_355264.1| AGR_C_4197p [Agrobacterium tumefaciens] >gi|179... 128 7e-29 ref|NP_344805.1| oxidoreductase, putative [Streptococcus pneumon... 120 1e-26 >ref|NP_105641.1| oxidoreductase, (N5,N10-methylenetetrahydromethanopterin reductase) [Mesorhizobium loti MAFF303099] dbj|BAB51427.1| oxidoreductase; N5,N10-methylenetetrahydromethanopterin reductase [Mesorhizobium loti] Length = 353 Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/165 (46%), Positives = 103/165 (62%), Gaps = 1/165 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+P+SA RAG LGLP ALA+IG +P FA LY+EAA RAG D + L + + HGF Sbjct: 179 GGTPQSAARAGALGLPLALAIIGG-EPARFAPLFDLYREAARRAGSDPTGLATSINVHGF 237 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 IA T +A + F+ N E+G P R +D + +GAL+VG PE+VA+KI+ Sbjct: 238 IAETTEQAADDFYGPQAEVMNRIGRERGWGPTSRAHFDQSRGPNGALFVGSPEQVAEKIV 297 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVA 170 + RFLL + GTMPHA++M+AI L GT+VAP VR+E A Sbjct: 298 AQHRIFNNDRFLLQMAIGTMPHAKIMKAIELYGTKVAPIVRKETA 342 >ref|NP_437669.1| putative oxidoreductase protein [Sinorhizobium meliloti 1021] pir||A95983 probable oxidoreductase protein SMb21003 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49529.1| putative oxidoreductase protein [Sinorhizobium meliloti] Length = 347 Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 75/165 (45%), Positives = 102/165 (61%), Gaps = 1/165 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+P+S RAG LG+P ALA+IG +P FA +LY+EA R+G D S+L + + HGF Sbjct: 179 GGTPQSVARAGALGVPMALAIIGG-EPARFAPLFQLYREAGRRSGQDPSKLKTSINVHGF 237 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 IA T++A +QF+ N E+G P +R +D A S G+L++GDPE VA KI+ Sbjct: 238 IADTTQEAADQFYGPQAEVMNRIGRERGWGPTNRAHFDQAISPTGSLFLGDPETVARKIV 297 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVA 170 RK G RFLL + G MPH ++ I L GT+VAP VRE +A Sbjct: 298 AHRKLFGNDRFLLQMAIGPMPHDRILHGIELYGTKVAPLVREMLA 342 >gb|AAB94650.1| N5,N10-methylenetetrahydromethanopterin reductase homolog [Staphylococcus carnosus] Length = 301 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 1/162 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+PES++RA GLP A+IG P F +Y+ A G+D + +PVA H+ G+ Sbjct: 137 GGTPESSIRAAEFGLPITYAIIGG-NPKRFKRNIAIYRAVAESRGYDLADMPVAVHSWGY 195 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 IA +A +F+ T + A E+ PPY + S +GA++VG PE VA K+I Sbjct: 196 IADTDEQAQREFYEPTKVHHEIIAKERNWPPYTEAHFQREISDEGAMFVGSPETVARKMI 255 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVRE 167 ++ + +G+ RF+LH+P G+MPH +M+AI+L G V P + + Sbjct: 256 KVIEELGLNRFMLHIPVGSMPHERIMKAIKLYGKRVKPIIED 297 >ref|NP_355264.1| AGR_C_4197p [Agrobacterium tumefaciens] ref|NP_532980.1| monooxygenase [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||H97636 N5,N10-methylenetetrahydromethanopterin reductase homolog (U96107) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AB2860 monooxygenase [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK88049.1| AGR_C_4197p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL43296.1| monooxygenase [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 353 Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 1/164 (0%) Query: 6 AGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAAHAHGF 65 G+P+S RAG +GLP ALA+IG + FA LY EAA RAG + ++L + + HGF Sbjct: 180 GGTPQSVARAGAMGLPVALAIIGG-EYRRFAPLFDLYHEAARRAGQEKTKLRTSINVHGF 238 Query: 66 IAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSLDGALYVGDPERVADKII 125 IA T KA +QF+ N E+G P +R +DAA +G L++G+PE VA+KII Sbjct: 239 IADTTDKAADQFYGPQAEVMNRIGRERGWGPTNRAHFDAARGPEGNLFLGEPELVAEKII 298 Query: 126 RLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEV 169 + RFLL + G MPH ++M I L GT+VAP VR+E+ Sbjct: 299 KAHGVFKNDRFLLQMAIGLMPHDQIMRGIELYGTKVAPLVRKEL 342 >ref|NP_344805.1| oxidoreductase, putative [Streptococcus pneumoniae TIGR4] ref|NP_357840.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] pir||D95031 oxidoreductase, probable SP0267 [imported] - Streptococcus pneumoniae (strain TIGR4) pir||F97902 conserved hypothetical protein spr0246 [imported] - Streptococcus pneumoniae (strain R6) gb|AAK74445.1| oxidoreductase, putative [Streptococcus pneumoniae TIGR4] gb|AAK99050.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] Length = 349 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 101/176 (57%), Gaps = 6/176 (3%) Query: 1 LXXXXAGSPESAVRAGTLGLPFALAMIGPVQPLDFASQAKLYKEAAARAGHDSSRLPVAA 60 L G ES V+ GLP A+IG P F + Y+E + AGH L V A Sbjct: 176 LWIATGGHVESTVKIAQAGLPIVYAIIGG-NPRYFKKLIQAYREIGSEAGHADKDLKVGA 234 Query: 61 HAHGFIAADTRKAMEQFFPSTYARTNVRAAEKGLPPYHRTDYDAACSL---DGALYVGDP 117 H+ G+IA D +A++ +F T + V A K P + Y+ +GA++VG+P Sbjct: 235 HSWGWIAEDGEQAVKDYFHPT--KQVVDAISKDRPHWQELRYEQYLEQVGPNGAMFVGNP 292 Query: 118 ERVADKIIRLRKHVGVTRFLLHVPHGTMPHAEVMEAIRLLGTEVAPRVREEVALWE 173 ++VA+K+IR+ + +G+ RF+LH+P G+MPH +V+ AI L GT+VAP+VR A+ E Sbjct: 293 DQVAEKLIRMIEDLGLDRFMLHLPLGSMPHDQVLRAIELFGTQVAPKVRAYFAMKE 348 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.134 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 246,855,622 Number of extensions: 9024896 Number of successful extensions: 19000 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 18954 Number of HSP's successfully gapped: 31 Length of query: 177 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 60 Effective length of database: 439,570,995 Effective search space: 26374259700 Effective search space used: 26374259700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)