BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0007.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_781615.1| putative hemin transport system ATP-binding pro... 272 4e-72 ref|NP_625294.1| Fe uptake system permease [Streptomyces coelico... 246 4e-64 ref|NP_971367.1| iron compound ABC transporter, ATP-binding prot... 243 3e-63 ref|ZP_00087029.1| COG1120: ABC-type cobalamin/Fe3+-siderophores... 243 4e-63 ref|NP_631273.1| putative iron transport protein, ATP-binding co... 239 5e-62 >ref|NP_781615.1| putative hemin transport system ATP-binding protein fecE [Clostridium tetani E88] gb|AAO35552.1| putative hemin transport system ATP-binding protein fecE [Clostridium tetani E88] Length = 252 Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 132/239 (55%), Positives = 173/239 (72%) Query: 1 MNLNVEHLSVSFANANIVKDVSLKVRNKQFVGLIGPNGCGKSTLLKSIYKVIKPSQGKVS 60 M L+VE+++V N IV + ++V +FVGLIGPNG GKSTLLK+IY++ KP G + Sbjct: 1 MKLSVENINVQLGNKKIVHNACIEVNKGEFVGLIGPNGSGKSTLLKTIYRICKPESGAIY 60 Query: 61 LAEMNLMKSSPRLVAQKLGVVGQFNELSFDFTVREMVAMGRTPHKGMLETDNQEDANIVS 120 L NL+ + +A +LGVV QFN ++FD V +MV MGR+PHK MLE DN++D I Sbjct: 61 LDGKNLLTMPIKDMACELGVVSQFNHIAFDIKVEDMVLMGRSPHKKMLEQDNEQDYKIAR 120 Query: 121 AALHKVNLEGYADRSYNSLSGGEKQRVILARVLAQQPEFMILDEPTNHLDIKYQLQILNI 180 L KV++ YA RS+++LSGGEKQRV+LAR LAQQ + +ILDEPTNHLDIKYQ+QILN+ Sbjct: 121 EMLEKVDMLNYAKRSFSTLSGGEKQRVLLARTLAQQVKLLILDEPTNHLDIKYQIQILNL 180 Query: 181 VKKLDIGILAALHDLTLAAEYCDYLYVMKKGQVAACGKPEDILTKELIGQVFDVACETY 239 VK L + ALHDL LAA YCD LYVM G V A G+P+DILT +LI +V++V C+ + Sbjct: 181 VKSLKTTAVVALHDLNLAAAYCDKLYVMHNGNVVANGEPKDILTSQLIKEVYEVDCKIH 239 >ref|NP_625294.1| Fe uptake system permease [Streptomyces coelicolor A3(2)] emb|CAC14366.1| Fe uptake system permease [Streptomyces coelicolor A3(2)] Length = 272 Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 113/251 (45%), Positives = 171/251 (68%) Query: 2 NLNVEHLSVSFANANIVKDVSLKVRNKQFVGLIGPNGCGKSTLLKSIYKVIKPSQGKVSL 61 L ++ ++++ +V+DVSL R + +GL+GPNG GKS+LL+++Y++++P+ G+VS+ Sbjct: 5 ELVIDGVTLTAGAHRLVEDVSLTARPGEVIGLVGPNGSGKSSLLRAVYRILRPTTGQVSV 64 Query: 62 AEMNLMKSSPRLVAQKLGVVGQFNELSFDFTVREMVAMGRTPHKGMLETDNQEDANIVSA 121 + R +A+ + V Q + F+ TVRE+VAMGRTPHK +L+ D EDA ++ + Sbjct: 65 DGTDAWSLPVRQLARTVAAVVQESGAEFELTVREVVAMGRTPHKRLLDGDTAEDAGLIRS 124 Query: 122 ALHKVNLEGYADRSYNSLSGGEKQRVILARVLAQQPEFMILDEPTNHLDIKYQLQILNIV 181 AL V+ A R ++ LSGGE+QRV++AR LAQQP ++LDEPTNHLDI++QL +L + Sbjct: 125 ALTAVDATDLAHRPFDQLSGGERQRVLIARALAQQPSLLVLDEPTNHLDIRHQLDVLGAL 184 Query: 182 KKLDIGILAALHDLTLAAEYCDYLYVMKKGQVAACGKPEDILTKELIGQVFDVACETYRN 241 ++L +L ALHDL LAA YCD LYV+ G+V A G P DILT +L+ +V+ V E + Sbjct: 185 RRLPATVLVALHDLNLAAYYCDRLYVLCDGKVTAAGPPADILTSQLLSEVYGVTSEVTIH 244 Query: 242 PVTGALGIAYL 252 P TGA + +L Sbjct: 245 PRTGAPQVTFL 255 >ref|NP_971367.1| iron compound ABC transporter, ATP-binding protein, putative [Treponema denticola ATCC 35405] gb|AAS11248.1| iron compound ABC transporter, ATP-binding protein, putative [Treponema denticola ATCC 35405] Length = 253 Score = 243 bits (620), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 111/234 (47%), Positives = 165/234 (70%) Query: 1 MNLNVEHLSVSFANANIVKDVSLKVRNKQFVGLIGPNGCGKSTLLKSIYKVIKPSQGKVS 60 M L++ LS +F + NI+ D+ L +++ VG+IGPNG GKSTLLK IY+V+KP G + Sbjct: 1 MVLDISSLSFNFGSKNILADIDLSIKDNGIVGIIGPNGSGKSTLLKCIYRVLKPKTGTIF 60 Query: 61 LAEMNLMKSSPRLVAQKLGVVGQFNELSFDFTVREMVAMGRTPHKGMLETDNQEDANIVS 120 + N+ + A+K+ VV Q N+ FDF V EMV +GR+PHK +E D+ ED + Sbjct: 61 IDGKNINDYQFKETAKKMAVVAQHNDTHFDFNVLEMVLIGRSPHKKFMERDSAEDIELAY 120 Query: 121 AALHKVNLEGYADRSYNSLSGGEKQRVILARVLAQQPEFMILDEPTNHLDIKYQLQILNI 180 AL +VN++ +ADR+++SLSGGEKQR+ILAR L Q + +ILDEPTNHLDIK+QL +++ Sbjct: 121 KALEQVNMKDFADRNFSSLSGGEKQRIILARALVQNTDCLILDEPTNHLDIKHQLHFMSL 180 Query: 181 VKKLDIGILAALHDLTLAAEYCDYLYVMKKGQVAACGKPEDILTKELIGQVFDV 234 K L I +++A+HDL +AA YCD +Y +K+GQ+ A G +++T+E+I ++DV Sbjct: 181 AKDLKITVISAIHDLNIAAMYCDKIYALKEGQIIAAGSVNEVITEEVIKTLYDV 234 >ref|ZP_00087029.1| COG1120: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Pseudomonas fluorescens PfO-1] Length = 231 Score = 243 bits (619), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 114/224 (50%), Positives = 156/224 (69%) Query: 29 QFVGLIGPNGCGKSTLLKSIYKVIKPSQGKVSLAEMNLMKSSPRLVAQKLGVVGQFNELS 88 +FVGLIGPNG GK++LL+ Y+ +P G+V L N+ K S R AQ++ VV Q + Sbjct: 5 EFVGLIGPNGSGKTSLLRCAYRFSQPEHGEVRLDHHNVWKQSSRWCAQRIAVVLQEFPDA 64 Query: 89 FDFTVREMVAMGRTPHKGMLETDNQEDANIVSAALHKVNLEGYADRSYNSLSGGEKQRVI 148 F TV E+VAMGRTPHKG+ + D ED N+ + AL V L+G+ D ++ +LSGGEKQRVI Sbjct: 65 FGLTVEEVVAMGRTPHKGLFDGDTLEDRNLATQALKSVGLDGFEDHAFATLSGGEKQRVI 124 Query: 149 LARVLAQQPEFMILDEPTNHLDIKYQLQILNIVKKLDIGILAALHDLTLAAEYCDYLYVM 208 LAR L QQP+ +ILDEPTNHLD +YQL++L +VK+L IG LA++HDL LAA +CD LYV+ Sbjct: 125 LARALTQQPQLLILDEPTNHLDPRYQLELLQLVKRLQIGTLASIHDLNLAAAFCDRLYVI 184 Query: 209 KKGQVAACGKPEDILTKELIGQVFDVACETYRNPVTGALGIAYL 252 G++ A G P+++LT EL+ VF V +P+ G I ++ Sbjct: 185 NHGRIVASGTPQEVLTVELLRDVFGVEALIDSHPLHGYPRITWI 228 >ref|NP_631273.1| putative iron transport protein, ATP-binding component. [Streptomyces coelicolor A3(2)] emb|CAB94640.1| putative iron transport protein, ATP-binding component. [Streptomyces coelicolor A3(2)] Length = 258 Score = 239 bits (610), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 116/251 (46%), Positives = 162/251 (64%) Query: 1 MNLNVEHLSVSFANANIVKDVSLKVRNKQFVGLIGPNGCGKSTLLKSIYKVIKPSQGKVS 60 M + V+ L+V + A ++ DVSL + FVGL+GPNG GKSTLL+ +Y+ ++P+ G V Sbjct: 2 MRVEVDGLTVEMSGARVLDDVSLHADSGGFVGLVGPNGSGKSTLLRCVYRALRPTAGVVR 61 Query: 61 LAEMNLMKSSPRLVAQKLGVVGQFNELSFDFTVREMVAMGRTPHKGMLETDNQEDANIVS 120 L L SPR A++L + Q FDFTV E+VAMGR PH+G + ED + + Sbjct: 62 LGGDELPSLSPRESARRLAALPQEAAAEFDFTVAEVVAMGRLPHQGAAARTSDEDRHACA 121 Query: 121 AALHKVNLEGYADRSYNSLSGGEKQRVILARVLAQQPEFMILDEPTNHLDIKYQLQILNI 180 AAL V + R + +LSGGE+QRV++AR LAQQP ++LDEPTNHLDI QL++L++ Sbjct: 122 AALEGVGADHLTGRGFLTLSGGERQRVLIARALAQQPRILVLDEPTNHLDIAQQLEVLSL 181 Query: 181 VKKLDIGILAALHDLTLAAEYCDYLYVMKKGQVAACGKPEDILTKELIGQVFDVACETYR 240 V+ +LAALHDL LAA +CD L+V+ G++ A G P D+LT EL+ VF V Sbjct: 182 VRASGPTVLAALHDLNLAALHCDRLHVVDGGRIVASGAPHDVLTAELLADVFKVRAHRVA 241 Query: 241 NPVTGALGIAY 251 +P TGAL + + Sbjct: 242 HPETGALQLIF 252 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 359,555,795 Number of extensions: 14228579 Number of successful extensions: 115778 Number of sequences better than 1.0e-05: 20280 Number of HSP's gapped: 91076 Number of HSP's successfully gapped: 21812 Length of query: 255 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 132 Effective length of database: 423,280,401 Effective search space: 55873012932 Effective search space used: 55873012932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)