BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0106.0004.p (219 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832552.1| hypothetical Cytosolic Protein [Bacillus cereus... 298 5e-80 ref|NP_979130.1| conserved hypothetical protein [Bacillus cereus... 297 1e-79 gb|EAJ13281.1| unknown [environmental sequence] 244 1e-63 ref|NP_972869.1| conserved hypothetical protein [Treponema denti... 119 4e-26 ref|NP_619142.1| conserved hypothetical protein [Methanosarcina ... 114 2e-24 >ref|NP_832552.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP09753.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 226 Score = 298 bits (763), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 141/213 (66%), Positives = 163/213 (76%), Gaps = 1/213 (0%) Query: 4 MILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALYDRXXXXXXXXXXXXXX-XXNV 62 M+ IPAGEV LRDDR+K +W ++ F LA VT LYD N+ Sbjct: 13 MVNIPAGEVVLRDDRIKKEWLVQIQPFLLAKYAVTMELYDAITNSTLNNFDKNHKPVVNI 72 Query: 63 SWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGYQ 122 SWNDAI FCN LS+++GL+E YSIS+ G+ V CN +++GYRLP+EAEWQYACKA TTGY Sbjct: 73 SWNDAIAFCNVLSKKAGLKEYYSISDGGQIVKCNLDSNGYRLPSEAEWQYACKASTTGYT 132 Query: 123 YGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRGG 182 YG+L +AWY NS G +H+ GQK PNAWGLYDMLGNVWEWC+D+YDE VYGSYRIFRGG Sbjct: 133 YGKLHDIAWYNENSNGEIHDVGQKEPNAWGLYDMLGNVWEWCYDLYDETVYGSYRIFRGG 192 Query: 183 SWAEEARGCGATCRRRSHPTFHIDDLGFRLARS 215 SWAE ARGCGATCRRRSHPTFHIDDLGFRLARS Sbjct: 193 SWAETARGCGATCRRRSHPTFHIDDLGFRLARS 225 >ref|NP_979130.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41738.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 225 Score = 297 bits (761), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 139/214 (64%), Positives = 167/214 (78%), Gaps = 1/214 (0%) Query: 3 QMILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALYDRXXXXXXXXXXXXXX-XXN 61 M+ IP G+V+LRDDR+K +W V+SF LA VT LYD N Sbjct: 11 NMVKIPTGKVELRDDRIKKEWKVPVNSFLLAKYVVTMELYDAITNHTSNLSKDKYKPVVN 70 Query: 62 VSWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGY 121 +SWNDAI+FCN LS+++GL+E YSI++ G+ VSCN +++GYRLP+EAEWQYACKAGTTGY Sbjct: 71 ISWNDAIMFCNLLSKKAGLKEYYSINDGGQIVSCNLDSNGYRLPSEAEWQYACKAGTTGY 130 Query: 122 QYGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRG 181 YGEL +AWY NS G + + G+K PNAWGLYDMLGNVWEWC+D+YDE VYG+YRIFRG Sbjct: 131 IYGELKKIAWYNENSNGQIQDIGKKEPNAWGLYDMLGNVWEWCYDLYDEKVYGAYRIFRG 190 Query: 182 GSWAEEARGCGATCRRRSHPTFHIDDLGFRLARS 215 GSWAEEARGCGATCRRRSHPTF+IDDLGFRLA+S Sbjct: 191 GSWAEEARGCGATCRRRSHPTFYIDDLGFRLAKS 224 >gb|EAJ13281.1| unknown [environmental sequence] Length = 245 Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 121/213 (56%), Positives = 141/213 (66%), Gaps = 1/213 (0%) Query: 4 MILIPAGEVQLRDDRVKTKWTARVDSFWLAPVPVTNALYDRXXXXXXXXXXXXX-XXXNV 62 M+ +PAG + LRDDR+ W + F + PVT A Y NV Sbjct: 15 MVQVPAGTIALRDDRIGRTWCVELQRFAIGRYPVTQAQYAAVTGLSPSSHGGAHCPVENV 74 Query: 63 SWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTGYQ 122 SW DA+ FCN+LS GL Y I EDG S ++GYRLPTEAEW+YAC+AGT G + Sbjct: 75 SWIDAVRFCNRLSTADGLPCVYEIGEDGTGASPIPGSNGYRLPTEAEWEYACRAGTQGAR 134 Query: 123 YGELDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYGSYRIFRGG 182 YGELDA+AWY NSGG H+ G+K PN WGL+DMLGNVWEWC D YD VYGSYR+FRGG Sbjct: 135 YGELDAIAWYRDNSGGRTHDVGRKQPNGWGLHDMLGNVWEWCVDQYDPAVYGSYRVFRGG 194 Query: 183 SWAEEARGCGATCRRRSHPTFHIDDLGFRLARS 215 WA+ RGC AT RRRSHPTF IDDLGFR+ARS Sbjct: 195 GWADVERGCLATNRRRSHPTFAIDDLGFRVARS 227 >ref|NP_972869.1| conserved hypothetical protein [Treponema denticola ATCC 35405] gb|AAS12788.1| conserved hypothetical protein [Treponema denticola ATCC 35405] Length = 329 Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 93/192 (48%), Gaps = 39/192 (20%) Query: 61 NVSWNDAILFCNKLSQESGLQECYSISEDGESV--------------SCNWEA------- 99 NV+W AI FCNKLS + L+ CY+++ G V + +W+ Sbjct: 135 NVNWYQAIAFCNKLSIKLNLEPCYTVNVGGNPVDFAALSFDQIPDSNNADWDKAELDINK 194 Query: 100 DGYRLPTEAEWQYACKAGTTGYQYG-----ELDAVAWYEGNSGGVVHEAGQKLPNAWGLY 154 G+RLPTEAEW++A K GT G EL AWY NSG HE +K PN +GLY Sbjct: 195 KGFRLPTEAEWEWAAKGGTDDKWSGTNTEAELKNYAWYGSNSGSKTHEVKKKKPNWYGLY 254 Query: 155 DMLGNVWEWCWD-------------IYDENVYGSYRIFRGGSWAEEARGCGATCRRRSHP 201 D+ GNV EWCWD Y GS R+ RGGSWA A C R P Sbjct: 255 DIAGNVAEWCWDWRADIHTGDSFPQDYPGPASGSGRVLRGGSWAGSADYCAVGERVNISP 314 Query: 202 TFHIDDLGFRLA 213 DLGFRLA Sbjct: 315 GVRCSDLGFRLA 326 >ref|NP_619142.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] gb|AAM07622.1| conserved hypothetical protein [Methanosarcina acetivorans str. C2A] Length = 270 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/173 (41%), Positives = 86/173 (49%), Gaps = 37/173 (21%) Query: 61 NVSWNDAILFCNKLSQESGLQECYSISEDGESVSCNWEADGYRLPTEAEWQYACKAGTTG 120 NVSW D F NKL++ G D YRLP+EAEW+YAC+AGTT Sbjct: 116 NVSWYDVQEFINKLNEMEG-------------------TDKYRLPSEAEWEYACRAGTTT 156 Query: 121 -YQYGE----LDAVAWYEGNSGGVVHEAGQKLPNAWGLYDMLGNVWEWCWDIYDENVYG- 174 Y +G+ L AWY NS H GQK PN+WGLY M GNV EWC D + +N G Sbjct: 157 RYFFGDDESKLGDYAWYWNNSDRKTHPVGQKKPNSWGLYGMSGNVLEWCQDKWHDNYDGA 216 Query: 175 ------------SYRIFRGGSWAEEARGCGATCRRRSHPTFHIDDLGFRLARS 215 SYR+ R GSW C + R R P H+ +GFRL RS Sbjct: 217 PSDGSAWEEGNSSYRVIRNGSWNASPMVCRSAYRFRFVPDTHVHFIGFRLLRS 269 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.464 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 347,009,987 Number of extensions: 14192589 Number of successful extensions: 23937 Number of sequences better than 1.0e-05: 218 Number of HSP's gapped: 23618 Number of HSP's successfully gapped: 220 Length of query: 219 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 98 Effective length of database: 428,710,599 Effective search space: 42013638702 Effective search space used: 42013638702 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)