BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0008.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAB40634.1| ATP-binding protein-homolog [Thermoactinomyces v... 300 2e-80 ref|NP_471224.1| similar to ABC transporter (ATP-binding protein... 245 6e-64 ref|NP_465303.1| similar to ABC transporter (ATP-binding protein... 244 1e-63 ref|NP_389417.1| similar to ABC transporter (ATP-binding protein... 236 3e-61 ref|NP_243136.1| ABC transporter (ATP-binding protein) [Bacillus... 227 2e-58 >dbj|BAB40634.1| ATP-binding protein-homolog [Thermoactinomyces vulgaris] Length = 266 Score = 300 bits (769), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 136/256 (53%), Positives = 196/256 (76%) Query: 1 MIIDLHDVTWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSIS 60 MII+++ V+W + +L ++W V+PGE+W L+GLNGSGKTTLLN++ GY+WPTTG++ Sbjct: 1 MIIEMNSVSWMREGKMILKNISWQVQPGENWCLIGLNGSGKTTLLNLVNGYIWPTTGTVK 60 Query: 61 VLGERYGEVDLREMRKSIGWGSSSLQEKLYGTDRTQNVVISGKHATIGLYDHLTEQDTVR 120 + G+++GEV+LRE+RK IGW SSSL ++L+ + N+V+SGK A+IGLYD + D + Sbjct: 61 LFGKKFGEVNLRELRKKIGWVSSSLAQQLHNHETAINIVLSGKFASIGLYDKPEKIDMEK 120 Query: 121 AGELMKQLGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERLL 180 A L++ +GC HL + Y+T SQGEKQK+LIARALMA P+++ILDEPC GLDLF+RE+LL Sbjct: 121 AAALLEMMGCGHLITQTYQTLSQGEKQKVLIARALMASPQLMILDEPCTGLDLFAREQLL 180 Query: 181 DSIRELALSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFFE 240 SI+ ++ + P LIYVTHH EEI F+HTLLL++G++ ++G TS VLT +LSDFF+ Sbjct: 181 HSIQSISAHPQSPALIYVTHHVEEITNCFTHTLLLKQGEIFRAGPTSHVLTEELLSDFFD 240 Query: 241 SEVIVERHGERVYVRA 256 + + VE G+R ++R Sbjct: 241 TPIEVEHRGKRCWIRP 256 >ref|NP_471224.1| similar to ABC transporter (ATP-binding protein) [Listeria innocua] pir||AH1668 ABC transporter (ATP-binding protein) homolog lin1890 [imported] - Listeria innocua (strain Clip11262) emb|CAC97120.1| lin1890 [Listeria innocua] Length = 257 Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 167/228 (73%) Query: 16 TLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSISVLGERYGEVDLREMR 75 T+L+ +NWTV E+WA+LGLNGSGKTTLL ++ GYLWP++G + VLG +G+ L E+R Sbjct: 15 TILSDINWTVNEKENWAILGLNGSGKTTLLQLLNGYLWPSSGKLQVLGHVFGQTSLPELR 74 Query: 76 KSIGWGSSSLQEKLYGTDRTQNVVISGKHATIGLYDHLTEQDTVRAGELMKQLGCFHLWD 135 KSIGW S++L +L + ++ +V+SGK A+IG+Y +T+ + +A +L+ G L Sbjct: 75 KSIGWVSNALDHQLKDYELSEQIVLSGKFASIGMYAKVTDVEVNQAKKLLTNCGGASLIG 134 Query: 136 REYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERLLDSIRELALSKEMPTL 195 + Y+ SQGE+Q +LIARALMA+P++LILDEPCNGLDLF++ RLL+ I+++A + PT+ Sbjct: 135 KAYKILSQGERQIVLIARALMANPKLLILDEPCNGLDLFAKSRLLERIKKIAERPDSPTM 194 Query: 196 IYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFFESEV 243 ++VTHHTEEILP F + +LLR G++ G T ++LT VL F++ V Sbjct: 195 LFVTHHTEEILPCFDNIILLRDGEITHHGKTEKLLTEEVLQAFYQKPV 242 >ref|NP_465303.1| similar to ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AB1297 ABC transporter (ATP-binding protein) homolog lmo1778 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99856.1| lmo1778 [Listeria monocytogenes] Length = 257 Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 113/227 (49%), Positives = 166/227 (73%) Query: 17 LLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSISVLGERYGEVDLREMRK 76 +L+ +NW V E+WA+LGLNGSGKTTLL ++ GYLWP++G++ VLG +G+ L E+RK Sbjct: 16 ILSDINWVVNDKENWAILGLNGSGKTTLLQLLNGYLWPSSGNLQVLGHIFGKTSLPELRK 75 Query: 77 SIGWGSSSLQEKLYGTDRTQNVVISGKHATIGLYDHLTEQDTVRAGELMKQLGCFHLWDR 136 SIGW S++L +L + ++ +V+SGK A+IG+Y+ +T + +A +L+ G L + Sbjct: 76 SIGWVSNALDHQLKEYELSEQIVLSGKFASIGIYEKVTTAEIDQAKKLLTDCGGITLIGK 135 Query: 137 EYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERLLDSIRELALSKEMPTLI 196 Y+ SQGE+Q +LIARALMA P++LILDEPCNGLDLF++ RLL+ I+++A E PT++ Sbjct: 136 PYKILSQGERQIVLIARALMASPKLLILDEPCNGLDLFAKNRLLERIKKIAELPESPTML 195 Query: 197 YVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFFESEV 243 +VTHHTEEILP F + +LLR G++ G T ++LT VL DF++ V Sbjct: 196 FVTHHTEEILPCFDNIILLRDGEITHHGKTEKLLTEEVLQDFYQKPV 242 >ref|NP_389417.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||A69876 ABC transporter (ATP-binding protein) homolog ylmA - Bacillus subtilis emb|CAB13408.1| ylmA [Bacillus subtilis subsp. subtilis str. 168] Length = 264 Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/259 (45%), Positives = 173/259 (66%), Gaps = 1/259 (0%) Query: 1 MIIDLHDVTWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSIS 60 MI+ L +V+ + +L ++W V E+W L GLNG+GKT LLNM+ Y +PT+G + Sbjct: 1 MILQLDNVSLKRNGKWILKDIHWKVEEKENWVLYGLNGAGKTALLNMLCSYYFPTSGEMR 60 Query: 61 VLGERYGEVDLRE-MRKSIGWGSSSLQEKLYGTDRTQNVVISGKHATIGLYDHLTEQDTV 119 VLG +G+ +L E +R+ IG S++LQ+KLY D + +SG +A+IGLY+ +++ Sbjct: 61 VLGHEFGKTELGEKLRRKIGLVSAALQQKLYPADSAFEIALSGAYASIGLYETPSKETRE 120 Query: 120 RAGELMKQLGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERL 179 +A L++ LG DR Y T SQGEKQ+ LIARALMADP +LILDEP GLD +RE+L Sbjct: 121 KAIGLLEDLGAIEYADRRYETLSQGEKQRALIARALMADPELLILDEPVTGLDFIAREKL 180 Query: 180 LDSIRELALSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFF 239 LD+I +A + P+++YVTHH EEILPVF LLL++G+V SG E+LT +LS FF Sbjct: 181 LDTITYIANKENAPSILYVTHHAEEILPVFDKALLLKQGEVFGSGEIKEMLTDQILSAFF 240 Query: 240 ESEVIVERHGERVYVRAAQ 258 ++ + V + +R ++ A+ Sbjct: 241 DTPIHVLWNQDRPFLTRAE 259 >ref|NP_243136.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||F83933 ABC transporter (ATP-binding protein) BH2270 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05989.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 261 Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 111/256 (43%), Positives = 162/256 (63%), Gaps = 2/256 (0%) Query: 2 IIDLHDVTWTQGIHTLLNGVNWTVRPGEHWALLGLNGSGKTTLLNMITGYLWPTTGSISV 61 I+ + VT + +L ++W V GEHWA++GLNGSGKT+LL +ITGY WPT G ++V Sbjct: 4 ILQVEQVTLRKAKKPILQQISWQVEQGEHWAIVGLNGSGKTSLLKIITGYEWPTEGHVAV 63 Query: 62 LGERYGEVDLREMRKSIGWGSSSLQEKLY--GTDRTQNVVISGKHATIGLYDHLTEQDTV 119 LG RYG V ++E+RK IGW S SL ++ + G D +V+SG H T+G+Y+ L E D Sbjct: 64 LGNRYGHVPIQEVRKRIGWVSMSLDDRFHTKGQDTVLEIVLSGLHGTVGVYEPLGEADVA 123 Query: 120 RAGELMKQLGCFHLWDREYRTCSQGEKQKLLIARALMADPRVLILDEPCNGLDLFSRERL 179 +A ++ G HL D + T SQGE+++ +ARA +A P + ILDEP GLDL +RE+L Sbjct: 124 KAEAAIETFGLTHLTDERFLTLSQGERKRAFLARAWVAKPELFILDEPTTGLDLIAREQL 183 Query: 180 LDSIRELALSKEMPTLIYVTHHTEEILPVFSHTLLLRRGQVVQSGLTSEVLTAGVLSDFF 239 L ++ +A +K PT +YVTH+ EEI P +H L+L+ G V+ G EVLT +++ F Sbjct: 184 LQTLESVATTKGAPTFLYVTHYPEEIQPFITHVLMLKDGHVIAQGRKDEVLTKEMITAAF 243 Query: 240 ESEVIVERHGERVYVR 255 + V R +V+ Sbjct: 244 GCSLDVIAQSGRYWVK 259 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 379,903,084 Number of extensions: 15420004 Number of successful extensions: 104332 Number of sequences better than 1.0e-05: 15319 Number of HSP's gapped: 90034 Number of HSP's successfully gapped: 16223 Length of query: 259 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 136 Effective length of database: 423,280,401 Effective search space: 57566134536 Effective search space used: 57566134536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)