BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0105.0003.p (293 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183401.1| hypothetical protein Exigu117701 [Exiguobacte... 269 5e-71 ref|NP_693490.1| multiple sugar-binding transport system permeas... 259 4e-68 sp|P37730|AMYD_THETU Potential starch degradation products trans... 255 1e-66 ref|ZP_00069191.1| COG1175: ABC-type sugar transport systems, pe... 224 2e-57 ref|NP_601659.1| ABC-type transporter, permease component [Coryn... 196 6e-49 >ref|ZP_00183401.1| hypothetical protein Exigu117701 [Exiguobacterium sp. 255-15] Length = 182 Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 122/181 (67%), Positives = 154/181 (85%) Query: 112 VPHVIGGLLLGFIWQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGY 171 +P++IGGL+LGF+WQFI+V+GFAS+G+ TGWS F LPWLG T FW IVIV +WQ GY Sbjct: 1 MPNLIGGLILGFVWQFIYVKGFASIGELTGWSLFELPWLGDARTGFWGIVIVSIWQGGGY 60 Query: 172 LMVIYISAINNVPQSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDL 231 +MVIYI+A+ NVPQ LIEA+K+DGA R+ LR++TIPL+MP+VT+CLFL+ISWSFKLFD Sbjct: 61 IMVIYIAALQNVPQELIEAAKIDGANRLSTLRNITIPLIMPSVTICLFLTISWSFKLFDT 120 Query: 232 NLSLTKGGPFKATESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREV 291 NLSLT GGPFK+TE +ALNIY E++T + G+GSAKA+IFFV+VA I++ QV TKKREV Sbjct: 121 NLSLTNGGPFKSTEMLALNIYKESFTNNNLGLGSAKAIIFFVVVAAITVTQVYLTKKREV 180 Query: 292 E 292 E Sbjct: 181 E 181 >ref|NP_693490.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] dbj|BAC14525.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] Length = 286 Score = 259 bits (663), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 134/288 (46%), Positives = 187/288 (64%), Gaps = 3/288 (1%) Query: 6 RSRLMQQFIFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDP 65 ++R + ++F+ PT YSFT WNG+ + + G NYI +F ++ Sbjct: 2 KNRSLSFWLFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQAN-SFLGFENYIRLF-QEE 59 Query: 66 SFLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFIW 125 FLN+ WFT KF +VL N++G LA ++T+KL T N+ RTVFF+P++IGGL+LGFIW Sbjct: 60 HFLNAIWFTIKFAVVSIVLVNVIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIW 119 Query: 126 QFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVPQ 185 QFIFV F S GQ G F WL T FW +VI+ WQ GY+M+IYI+ + VPQ Sbjct: 120 QFIFVSAFNSAGQLLGLEFLQ-GWLSDATTGFWGLVILNAWQYGGYIMIIYIAYLEAVPQ 178 Query: 186 SLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKATE 245 L+EAS++DGA Q VT PLV PA T+ +FL++S +FK++D NL+LT GGPFK+TE Sbjct: 179 ELMEASEIDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTE 238 Query: 246 SVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVEL 293 +A++IYN A++ AKA+IFF++VA ++L QV KKREV+L Sbjct: 239 MIAMDIYNTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVDL 286 >sp|P37730|AMYD_THETU Potential starch degradation products transport system permease protein amyD pir||S37704 amyD protein - Thermoanaerobacterium thermosulfurigenes gb|AAB00843.1| membrane protein for maltose transport [Thermoanaerobacterium thermosulfurigenes] prf||1802282A sugar transport protein Length = 292 Score = 255 bits (651), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/282 (48%), Positives = 184/282 (65%), Gaps = 7/282 (2%) Query: 14 IFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDPSFLNSFWF 73 +F+ PT YYSFT WNGI++ V + GL+N++ + D F NS F Sbjct: 16 LFIAPTLLSLIIVVLIPFIIGIYYSFTDWNGINQPV-FIGLKNFMTL-RDDAEFWNSIIF 73 Query: 74 TAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIFVRGF 133 TAKF +V+ N++G LA ++TRK+F RN +RT F++P++IGGL+LGFIW FIFV F Sbjct: 74 TAKFAVACIVIINVVGLSLAMLVTRKIFARNFMRTAFYLPNLIGGLILGFIWNFIFVDVF 133 Query: 134 ASVGQAT--GWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEAS 191 ++ AT GW WL T T FW +VIV WQ GY+MVIYI+ I ++P LIEAS Sbjct: 134 QTISDATHIGWLG---GWLSTTNTGFWGLVIVTSWQMIGYVMVIYIAYIESIPTDLIEAS 190 Query: 192 KVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKATESVALNI 251 K+DGA Q R+V PL+ PA TV LF+++S SFKLFD NLSLT G P T+ + LNI Sbjct: 191 KIDGANSWQQFRNVVFPLIAPAFTVSLFITLSNSFKLFDQNLSLTAGAPGNTTQMITLNI 250 Query: 252 YNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVEL 293 Y A++ +G AKA+I F+I+AVIS++QV T+KREVE+ Sbjct: 251 YQTAFSAQEMAVGQAKAVIMFLIIAVISVIQVYLTQKREVEM 292 >ref|ZP_00069191.1| COG1175: ABC-type sugar transport systems, permease components [Oenococcus oeni MCW] Length = 284 Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/286 (40%), Positives = 184/286 (64%), Gaps = 7/286 (2%) Query: 7 SRLMQQFIFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDPS 66 +R ++F+ PT +YSFT+ NG++ W GL+NY + D + Sbjct: 3 TRKYNYWLFIAPTLILLAVIIVIPFIIGIFYSFTNSNGLT--ASWIGLKNY-QLLLSDDN 59 Query: 67 FLNSFWFTAKFTFFGLVLTNLLGFMLAYVLTR--KLFTRNVLRTVFFVPHVIGGLLLGFI 124 FL S W T F+ +V N++G A ++TR F R +LRT+FFVP++IGG+LLGFI Sbjct: 60 FLESCWLTILFSLLSVVGINVIGLGFALLVTRSDNYFNR-LLRTIFFVPNLIGGILLGFI 118 Query: 125 WQFIFVRGFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVP 184 WQFIF++ F + G++ WS+ WL T AT W +VI+F WQ +GY+M+IYIS +NN+P Sbjct: 119 WQFIFIQIFQAFGESLDWSWLK-GWLSTPATGLWGLVILFWWQMSGYIMLIYISFLNNIP 177 Query: 185 QSLIEASKVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKAT 244 ++ IE++++DGA Q H+ +P + PA T+ LFL+++ SFK+++ NL+LT GGP+++T Sbjct: 178 KNTIESAELDGANNQQIFWHIKLPQLAPAFTISLFLTLANSFKIYEQNLALTNGGPYRST 237 Query: 245 ESVALNIYNEAYTISRFGMGSAKAMIFFVIVAVISLLQVRATKKRE 290 E +++NIYN A+ + G A+ ++ F+ V ++S Q+ ++KRE Sbjct: 238 ELISMNIYNTAFVNYQQGYAQAEGIVLFIFVMLVSFAQLYFSRKRE 283 >ref|NP_601659.1| ABC-type transporter, permease component [Corynebacterium glutamicum ATCC 13032] dbj|BAB99853.1| ABC-type transporter, permease components [Corynebacterium glutamicum ATCC 13032] emb|CAF21122.1| ABC-type sugar transport system, permease component [Corynebacterium glutamicum ATCC 13032] Length = 281 Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 172/282 (60%), Gaps = 15/282 (5%) Query: 14 IFVGPTSXXXXXXXXXXXXXXXYYSFTSWNGISRHVGWTGLRNYIHIFTKDPSFLNSFWF 73 +FV PT + SFT + I+ + W G+ NY+ F++ F+++F F Sbjct: 11 VFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTIT-NAKWVGIDNYVKAFSQREGFISAFGF 69 Query: 74 TAKFTFFGLVLTNLLGFMLAYVLTRKLFTRNVLRTVFFVPHVIGGLLLGFIWQFIF--VR 131 T ++ N+ F+LA++LTRKL N RTVFF+P++IGG++LG+ WQ + V Sbjct: 70 TVLVVIVSVITVNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVL 129 Query: 132 GFASVGQATGWSFFNLPWLGTGATSFWAIVIVFVWQNAGYLMVIYISAINNVPQSLIEAS 191 + + W F + ++++ WQ GY+M+IYI+ + NVP LIEA+ Sbjct: 130 SHYATTISADWKF-----------GYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAA 178 Query: 192 KVDGAGRMQALRHVTIPLVMPAVTVCLFLSISWSFKLFDLNLSLTKGGPFKATESVALNI 251 ++DG + + LRHVTIP+VMP++T+CLFL++S SFKLFD NL+LT G P TE VALNI Sbjct: 179 ELDGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNI 238 Query: 252 YNEAYT-ISRFGMGSAKAMIFFVIVAVISLLQVRATKKREVE 292 N + ++ G+G AKA+IF V+V VI+ Q+RAT+ +E+E Sbjct: 239 INTLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIE 280 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.142 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 388,708,165 Number of extensions: 15354721 Number of successful extensions: 54716 Number of sequences better than 1.0e-05: 1359 Number of HSP's gapped: 53881 Number of HSP's successfully gapped: 1359 Length of query: 293 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 169 Effective length of database: 420,565,302 Effective search space: 71075536038 Effective search space used: 71075536038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)