BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0012.p (152 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00054680.1| COG3542: Uncharacterized conserved protein [M... 114 9e-25 ref|ZP_00004610.1| COG3542: Uncharacterized conserved protein [R... 108 4e-23 ref|NP_104629.1| hypothetical protein mlr3548 [Mesorhizobium lot... 107 7e-23 ref|NP_696288.1| narrowly conserved hypothetical protein [Bifido... 102 3e-21 ref|ZP_00051767.1| COG3542: Uncharacterized conserved protein [M... 102 3e-21 >ref|ZP_00054680.1| COG3542: Uncharacterized conserved protein [Magnetospirillum magnetotacticum] Length = 162 Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 14/143 (9%) Query: 10 LVEALGLQPHVEGGWYKRLWNAPFEIPQETLGESYSGPRASASSIYFLLHADEASEWHTV 69 ++ LGLQPH EGG Y W +P+ G R + ++IY+LL A E S WH V Sbjct: 28 VIAHLGLQPHPEGGHYAETWR---HVPE-------GGGRGAGTAIYYLLKAGERSHWHRV 77 Query: 70 LSSEIWLWHSGSPIVLSLGGTGDKPENVTEVILGLDVAAGQQPQVVIPPGVWQAARPLGE 129 ++EIW +H+G P+ L L G + V +LG D+ AGQ+PQV++PPG WQAA P+GE Sbjct: 78 DATEIWHYHAGDPLRLLLSADGCGTQGV---VLGPDILAGQRPQVIVPPGCWQAAVPMGE 134 Query: 130 EPVLVSCIVSPEFHFDDFKLIGK 152 LV C VSP F F F++ K Sbjct: 135 W-TLVGCTVSPAFDFAGFEMAPK 156 >ref|ZP_00004610.1| COG3542: Uncharacterized conserved protein [Rhodobacter sphaeroides] Length = 140 Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 15/140 (10%) Query: 10 LVEALGLQPHVEGGWYKRLWNAPFEIPQETLGESYSGPRASASSIYFLLHADEASEWHTV 69 ++ LGL H EGGWY+ W AP E R ++I FLL A E S WH + Sbjct: 6 IIARLGLARHPEGGWYRETWRAPAE------------GRPPGTAILFLLKAGERSHWHRI 53 Query: 70 LSSEIWLWHSGSPIVLSLGGTGDKPENVTEVILGLDVAAGQQPQVVIPPGVWQAARPLGE 129 ++EIW +H+G+P++LS+ G P E+ LG DV AG+ PQ ++PP WQAAR G+ Sbjct: 54 DATEIWHFHAGAPLILSVAADGAGP--AREIRLGPDVLAGESPQGIVPPHHWQAARSTGD 111 Query: 130 EPVLVSCIVSPEFHFDDFKL 149 LV C VSP F F+ F+L Sbjct: 112 W-SLVGCTVSPGFRFEGFEL 130 >ref|NP_104629.1| hypothetical protein mlr3548 [Mesorhizobium loti MAFF303099] dbj|BAB50415.1| hypothetical protein [Mesorhizobium loti] Length = 150 Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 23/154 (14%) Query: 1 MVTQKEISPLVEALGLQPHVEGGWYKRLWNAPFEIPQETLGESYSGPRASASSIYFLLHA 60 M + EI + LGL+PH EGGWY ET + G R +++IYFLL Sbjct: 1 MTSSAEI---IATLGLKPHPEGGWYA-----------ETFRDGAGGARGHSTAIYFLLEQ 46 Query: 61 DEASEWHTVL-SSEIWLWHSGSPIVLSL----GGTGDKPENVTEVILGLDVAAGQQPQVV 115 + S WH V ++E+W +H+G+P+ LS+ G TG + V E +LG+ +AAG++PQ+V Sbjct: 47 HQLSAWHRVKDAAEVWHFHAGAPLALSMWEEGGATGSQ---VIEQVLGIGLAAGERPQIV 103 Query: 116 IPPGVWQAARPLGEEPVLVSCIVSPEFHFDDFKL 149 +P G WQ+AR LGE LV C V+P F F F+L Sbjct: 104 VPAGWWQSARSLGEW-TLVGCTVAPGFDFAAFEL 136 >ref|NP_696288.1| narrowly conserved hypothetical protein [Bifidobacterium longum NCC2705] gb|AAN24924.1| narrowly conserved hypothetical protein [Bifidobacterium longum NCC2705] Length = 156 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 87/161 (54%), Gaps = 22/161 (13%) Query: 2 VTQKEISP----LVEALGLQPHVEGGWYKRLWNAPFEIPQETLGESYSGPRASASSIYFL 57 V +++SP +VE LGL+ H EGGWY R W +P E+ S P +S IYFL Sbjct: 3 VALQDMSPYARSIVERLGLETHPEGGWYTRDWQSPH------TDEASSRPLSSL--IYFL 54 Query: 58 LHADEASEWHTVLSSEIWLWHSGSPIVLSLGGTGDKPEN----VTEVILGLDVAAGQQP- 112 L +AS WH V + E+WLWH + + L LGG+ + PE+ T + LG + Q Sbjct: 55 LPEGDASAWHKVDADEVWLWHGPASVKLELGGSDETPESDESKRTVITLGSGITTDQADV 114 Query: 113 ----QVVIPPGVWQAARPLGEEPVLVSCIVSPEFHFDDFKL 149 V+P GVWQ P G+ LVSC+VSP F FD F L Sbjct: 115 TVSGHAVVPAGVWQRTVP-GQGDALVSCVVSPGFVFDGFTL 154 >ref|ZP_00051767.1| COG3542: Uncharacterized conserved protein [Magnetospirillum magnetotacticum] Length = 146 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 14/149 (9%) Query: 1 MVTQKEISPLVEALGLQPHVEGGWYKRLWNAPFEIPQETLGESYSGPRASASSIYFLLHA 60 M + +++ALGL+PH EGG Y+ + P + ++G ++IY+LL Sbjct: 1 MTESLTAAQVIDALGLKPHPEGGHYRETFRDPRTVDGRSVG----------TAIYYLLGV 50 Query: 61 DEASEWHTVLSSEIWLWHSGSPIVLSLGGTGDKPENVTEVILGLDVAAGQQPQVVIPPGV 120 E S WH V ++EIW WH+G+P+V++L G + + LG D+ GQ+PQ+V+P G Sbjct: 51 GETSAWHRVDAAEIWHWHAGAPMVITLSPNG---HDASAHHLGPDLLRGQRPQIVVPAGH 107 Query: 121 WQAARPLGEEPVLVSCIVSPEFHFDDFKL 149 WQ A LG LV C VSP F F F++ Sbjct: 108 WQTATSLGAW-TLVGCTVSPGFDFAGFEM 135 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.136 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 264,213,363 Number of extensions: 11218645 Number of successful extensions: 21217 Number of sequences better than 1.0e-05: 81 Number of HSP's gapped: 21056 Number of HSP's successfully gapped: 81 Length of query: 152 Length of database: 757,237,578 Length adjustment: 111 Effective length of query: 41 Effective length of database: 455,861,589 Effective search space: 18690325149 Effective search space used: 18690325149 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)