BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0101.0004.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_228621.1| sugar ABC transporter, permease protein, putati... 239 4e-62 ref|NP_488864.1| permease protein of sugar ABC transporter [Nost... 203 4e-51 ref|ZP_00110013.1| COG0395: ABC-type sugar transport system, per... 200 2e-50 ref|NP_902569.1| probable ABC transporter sugar permease [Chromo... 199 5e-50 ref|NP_899930.1| probable ABC transporter sugar permease [Chromo... 199 5e-50 >ref|NP_228621.1| sugar ABC transporter, permease protein, putative [Thermotoga maritima] pir||E72331 hypothetical protein TM0812 - Thermotoga maritima (strain MSB8) gb|AAD35894.1| sugar ABC transporter, permease protein, putative [Thermotoga maritima] Length = 271 Score = 239 bits (611), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 108/248 (43%), Positives = 164/248 (66%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PF W+ S G NV+ PP+++P F NYV WK + Y NT+II G + N Sbjct: 23 PFYWIAKTSFEAGGNVYKYPPSLIPYPATFSNYVGAWKTVKLGNYYLNTIIIAGFGTLLN 82 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +L S + AYPLA FKG+ +V L++ M+IP +IV+YLT++ L N++ GV+LP Sbjct: 83 VLFSLMVAYPLARIDFKGKQLVLFLILLPMMIPVQNTLIVNYLTLRKLGLLNTYTGVILP 142 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 AV++F IF+MRQ +L +P D+ ++DGA EL I+W+++ PL+KP IA + + +V+ + Sbjct: 143 QAVTIFGIFMMRQAYLSIPKSFEDAARIDGAGELYIWWKIITPLIKPDIATLVVFQVITW 202 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 W+NFLWP++VL D KYPL+ AL YLN F NF + AAG ++++ P++++F+F QRY + Sbjct: 203 WDNFLWPLIVLSDSNKYPLSVALVYLNSTFQVNFRYTAAGIVLAILPVVLLFIFAQRYII 262 Query: 274 EGIAGAIK 281 IAG +K Sbjct: 263 NAIAGGVK 270 >ref|NP_488864.1| permease protein of sugar ABC transporter [Nostoc sp. PCC 7120] pir||AH2408 permease protein of sugar ABC transporter all4824 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76523.1| permease protein of sugar ABC transporter [Nostoc sp. PCC 7120] Length = 279 Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 160/251 (63%), Gaps = 2/251 (0%) Query: 34 PFLWLLSVSLM-PGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVF 92 P LWL+S +L P N+F SPP +LP DN+ +VW + F +Y+ N+ +++ L V Sbjct: 29 PLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTLVSVLTVGL 88 Query: 93 NILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVL 152 N+L SL AYPLA F GR+ +F +++T++IP MI Y+ L N++LG++ Sbjct: 89 NLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLGMMF 148 Query: 153 PAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMA 212 P+ S F IFL+RQ F+GVP +I ++ +MDG+SEL ++W ++LP V+P + + + + Sbjct: 149 PSLASAFGIFLLRQAFMGVPKEIEEAARMDGSSELGLWWHIMLPAVRPALVTLAIFVFIG 208 Query: 213 FWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYY 272 W++FLWP++V++D Y L + L G FS ++ +AAG++I++ P++++FL QRY Sbjct: 209 AWSDFLWPLIVIQDENLYTLPLGVAKLAGTFSLDWRLVAAGSVIAIAPVLLLFLILQRYI 268 Query: 273 ME-GIAGAIKG 282 +E I +KG Sbjct: 269 VETDIGSGVKG 279 >ref|ZP_00110013.1| COG0395: ABC-type sugar transport system, permease component [Nostoc punctiforme] Length = 278 Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 96/254 (37%), Positives = 161/254 (63%), Gaps = 2/254 (0%) Query: 31 MMGPFLWLLSVSLM-PGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALG 89 M+ P LWL+S +L P N+ SPP +LP+ DN+ VW + F +Y+ N+ +++ L Sbjct: 25 MLFPLLWLISTALKSPTENILQSPPQLLPSQPTLDNFFSVWNSLPFGQYLYNSTLVSVLT 84 Query: 90 VVFNILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLG 149 V N+L +L AYPLA F GR+ +F +++T++IP MI Y+ L NS+LG Sbjct: 85 VGLNLLFCALAAYPLARLSFVGRDWIFVAIVSTIMIPFQIVMIPLYILTVQLGLRNSYLG 144 Query: 150 VVLPAAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLE 209 ++ P+ S F IFL+RQ F+ VP +I ++ +MDG+SEL ++W ++LP V+P + + + Sbjct: 145 MIFPSLASAFGIFLLRQAFMSVPKEIEEAARMDGSSELGLWWHVMLPAVRPALVTLAIFV 204 Query: 210 VMAFWNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQ 269 + W++FLWP++V++D Y L + L G FS ++ +AAG++I++ P++++FLF Q Sbjct: 205 FIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFSLDWRLVAAGSVIAIAPVLLLFLFLQ 264 Query: 270 RYYMEGIAGA-IKG 282 RY + G+ +KG Sbjct: 265 RYIVPTDTGSGVKG 278 >ref|NP_902569.1| probable ABC transporter sugar permease [Chromobacterium violaceum ATCC 12472] gb|AAQ60567.1| probable ABC transporter sugar permease [Chromobacterium violaceum ATCC 12472] Length = 281 Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 155/248 (62%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PFLW L +++ G VF PP + P + ++ VW + R+ N++ I+ L + Sbjct: 34 PFLWTLGIAVGDGEQVFDFPPPLWPKDAGWRHFAAVWDAIPLGRFFWNSLWISGLTTLGT 93 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +++SSL A+PLA F+GR VF +IAT+++PS I +Y+TI L +S LGVVLP Sbjct: 94 LVVSSLAAFPLAKLRFRGRQTVFYAIIATLLLPSEINFISNYVTISRLGLDDSRLGVVLP 153 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 + F I+LM+ F +P +I D+ +MDGA + ++F ++ LPL P +A +G+ ++ Sbjct: 154 SLAGAFGIYLMKHAFEEIPDEIVDAARMDGAGDWQVFLRICLPLSLPYLATLGIFTLVWS 213 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 WN ++WP VVL+ P YPL+ + YL G F+ + +AAG +I++ P++ VF+F QRY+M Sbjct: 214 WNVYVWPSVVLKTPELYPLSVGVLYLKGAFATSTRMVAAGAVIAILPVLAVFVFCQRYFM 273 Query: 274 EGIAGAIK 281 G+ GA+K Sbjct: 274 RGMDGAVK 281 >ref|NP_899930.1| probable ABC transporter sugar permease [Chromobacterium violaceum ATCC 12472] gb|AAQ57939.1| probable ABC transporter sugar permease [Chromobacterium violaceum ATCC 12472] Length = 286 Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 159/248 (64%) Query: 34 PFLWLLSVSLMPGRNVFSSPPAILPTFIDFDNYVQVWKFMSFPRYISNTVIITALGVVFN 93 PF W L+ +L VF+ PP +LPT +++ + + + N+ I AL V Sbjct: 39 PFWWTLATALSGDGEVFAFPPPLLPTAPTLEHFHEAVSSIDILAFYRNSFAIAALTVAGT 98 Query: 94 ILLSSLTAYPLAVFHFKGRNIVFSLLIATMIIPSSTAMIVHYLTIQAFQLGNSFLGVVLP 153 +L+S+L AYPLA F GR +VF ++ATMI+PS +V+++T+ QL +S+ GVVLP Sbjct: 99 LLVSALAAYPLARMKFPGRRLVFGAILATMILPSEVNFLVNFITVSKLQLTDSYSGVVLP 158 Query: 154 AAVSVFNIFLMRQTFLGVPSDIRDSGKMDGASELRIFWQLVLPLVKPGIAVIGLLEVMAF 213 IFL++Q F VP D+ D+ ++DGASE +IFW+++LPL +P +A + +L ++ Sbjct: 159 TLAGAVGIFLLKQAFEAVPQDLIDAARVDGASEWQIFWRIMLPLARPALAALTILTTVSA 218 Query: 214 WNNFLWPIVVLEDPGKYPLAAALTYLNGQFSYNFGWIAAGTMISVTPIIVVFLFTQRYYM 273 WN ++WP +V+ P K+PL+ + YL G FS+ +AAG +++V PI++VFLFTQRY++ Sbjct: 219 WNQYIWPSIVMSSPDKFPLSVGVLYLAGAFSFKTRVVAAGAVLTVLPILIVFLFTQRYFL 278 Query: 274 EGIAGAIK 281 G GA+K Sbjct: 279 RGFDGAVK 286 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.143 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 376,283,824 Number of extensions: 14781326 Number of successful extensions: 49244 Number of sequences better than 1.0e-05: 1400 Number of HSP's gapped: 48196 Number of HSP's successfully gapped: 1402 Length of query: 282 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 158 Effective length of database: 420,565,302 Effective search space: 66449317716 Effective search space used: 66449317716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 125 (52.8 bits)