BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0020.p
         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_981281.1| transcription regulator, ArsR family [imported]...   137   6e-32
ref|NP_834534.1| Transcriptional regulator, ArsR family [Bacillu...   133   1e-30
ref|ZP_00103988.1| COG0640: Predicted transcriptional regulators...   127   6e-29
ref|NP_391259.1| similar to transcriptional regulator (ArsR fami...   117   1e-25
ref|ZP_00180778.1| hypothetical protein Mther125901 [Moorella th...   113   1e-24

>ref|NP_981281.1| transcription regulator, ArsR family [imported] [Bacillus cereus
          ATCC 10987]
 gb|AAS43889.1| transcription regulator, ArsR family [imported] [Bacillus cereus
          ATCC 10987]
          Length = 96

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 81/94 (86%)

Query: 1  LKGRMNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLV 60
          +KGR  +N++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+
Sbjct: 1  MKGRKTLNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELI 60

Query: 61 QDERQGQFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QDE++GQF++YSL+TTV +++L W   FT  G+E
Sbjct: 61 QDEKKGQFVMYSLNTTVFQDLLTWVFTFTNKGEE 94


>ref|NP_834534.1| Transcriptional regulator, ArsR family [Bacillus cereus ATCC
          14579]
 gb|AAP11735.1| Transcriptional regulator, ArsR family [Bacillus cereus ATCC
          14579]
          Length = 90

 Score =  133 bits (334), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 77/88 (87%)

Query: 7  MNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQG 66
          MN++FKALADPTRR+IL LL+E D TAGEIA++FNM+KPSISHHLNALK+A L+QDE++G
Sbjct: 1  MNQAFKALADPTRRKILDLLKEGDLTAGEIAEHFNMTKPSISHHLNALKNAELIQDEKKG 60

Query: 67 QFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          QF++YSL+TTV +++L W   FT  G+E
Sbjct: 61 QFVMYSLNTTVFQDLLTWVFTFTNKGEE 88


>ref|ZP_00103988.1| COG0640: Predicted transcriptional regulators [Desulfitobacterium
          hafniense]
          Length = 114

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 72/88 (81%)

Query: 7  MNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQG 66
          +NE+FKAL+D TRRQIL+LLR  D TAGEIAD+F+M+KPSISHHLN LK A L+ D RQG
Sbjct: 4  LNETFKALSDKTRRQILKLLRAGDLTAGEIADHFDMTKPSISHHLNMLKQADLISDRRQG 63

Query: 67 QFILYSLDTTVLEEVLGWFLEFTGTGKE 94
          Q I Y+L+T+V E ++GWFLEFTG   E
Sbjct: 64 QNIYYTLNTSVFEGIMGWFLEFTGKQPE 91


>ref|NP_391259.1| similar to transcriptional regulator (ArsR family) [Bacillus
          subtilis]
 pir||D70029 transcription regulator ArsR family homolog yvbA - Bacillus
          subtilis
 emb|CAB15384.1| yvbA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 90

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 7  MNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDERQG 66
          MN  FKA++DPTRR+IL LL+  D TAG+IA++FN+SKPSISHHLN LK A ++ D R+G
Sbjct: 1  MNNVFKAISDPTRRKILDLLKGGDMTAGDIAEHFNISKPSISHHLNILKQAEVISDHRKG 60

Query: 67 QFILYSLDTTVLEEVLGWFLEFTGTG 92
          QFI YSL+TTVL++ + W L F   G
Sbjct: 61 QFIYYSLNTTVLQDSINWMLNFINKG 86


>ref|ZP_00180778.1| hypothetical protein Mther125901 [Moorella thermoacetica ATCC
          39073]
          Length = 103

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 67/92 (72%)

Query: 5  MNMNESFKALADPTRRQILRLLREKDRTAGEIADYFNMSKPSISHHLNALKHAGLVQDER 64
          M +N  FKAL D TRR+ILR L   D  AGEIA  F++S P+ISHHLN LK AGLVQDE+
Sbjct: 1  MGLNTLFKALGDDTRREILRRLARGDMAAGEIAAAFDLSWPTISHHLNVLKEAGLVQDEK 60

Query: 65 QGQFILYSLDTTVLEEVLGWFLEFTGTGKERE 96
          +GQ+++YSL+TTV +++ GW  +  G   ER+
Sbjct: 61 KGQYVIYSLNTTVFQDIAGWLFDMLGIITERQ 92


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 172,775,014
Number of extensions: 6574406
Number of successful extensions: 16925
Number of sequences better than 1.0e-05: 168
Number of HSP's gapped: 17025
Number of HSP's successfully gapped: 168
Length of query: 116
Length of database: 757,237,578
Length adjustment: 81
Effective length of query: 35
Effective length of database: 537,314,559
Effective search space: 18806009565
Effective search space used: 18806009565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)