BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0100.0012.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691810.1| ABC transporter ATP-binding protein [Oceanobaci... 284 2e-75 ref|NP_391745.1| similar to ABC transporter (ATP-binding protein... 269 6e-71 ref|NP_241156.1| ABC transporter (ATP-binding protein) [Bacillus... 263 4e-69 ref|NP_657208.1| ABC_tran, ABC transporter [Bacillus anthracis A... 256 5e-67 ref|NP_465751.1| similar to ABC transporter (ATP-binding protein... 233 5e-60 >ref|NP_691810.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC12845.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 302 Score = 284 bits (726), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/303 (45%), Positives = 201/303 (66%), Gaps = 3/303 (0%) Query: 1 MPLLTVANLRKVYGGHTPVDGISFDIEAGKCVALLGPNGAGKTTTLRMLAGLLKPTSGQI 60 M LLTV L K Y T ++ I F + CVAL+GPNGAGKTTTL+MLAGLL+ +SG+I Sbjct: 1 MNLLTVNKLTKTYKEKTIINQIDFKVPDNACVALIGPNGAGKTTTLKMLAGLLQSSSGEI 60 Query: 61 SFEGGPV-GDYRKRIGYLPQSPAFYNWMSGQEYVVFAAKLYGVSSKEAAGLAADVLEHVG 119 F P GD+R IGYLPQ P FY+WM+G E++V+ AKL +S A A ++L+ G Sbjct: 61 IFHNRPKKGDFRNYIGYLPQYPTFYSWMTGYEFLVYCAKLCLLSPTAAKSRANELLQKTG 120 Query: 120 LRDAARRKIGGYSGGMKQRLGLAQALIHRPRLLLLDEPVSALDPIGRREVMELLRGIRED 179 + DA ++I YSGGMKQRLG+AQA+IH+P+LLLLDEPVS+LDPIGR+E++ L+ ++++ Sbjct: 121 IFDAKDKRIASYSGGMKQRLGIAQAIIHQPKLLLLDEPVSSLDPIGRKEILLLMEELKKE 180 Query: 180 TTVIFSTHVLHDAEEICDDIILMNHGLIAEHGALSRLRSQYSIPVIRLTTEREEKAQRWL 239 T+ FSTH+L DAEE+ D++IL++ G + E G++S L+ Y +I+L E ++ + + Sbjct: 181 MTIFFSTHILRDAEEVSDELILLHQGKVIESGSISNLQDTYQTSMIKL--EFQDSLEMYQ 238 Query: 240 EDLAHRSFVEQSAVSSGSATLNVKNVELARQIILQEAGNLDIPLLQFEAGSSTLEDLFMK 299 E ++ S V + + + ++ AR+ IL EA + L F ++LED+FMK Sbjct: 239 EKVSQLSNVSDTYIDKNKLWVTAIDIPSAREEILFEAATHNWELTDFSIARASLEDMFMK 298 Query: 300 VVG 302 V Sbjct: 299 AVN 301 >ref|NP_391745.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||A70082 ABC transporter (ATP-binding protein) homolog yxlF - Bacillus subtilis dbj|BAA11737.1| homologous to many ATP-binding transport proteins~hypothetical [Bacillus subtilis] emb|CAB15892.1| yxlF [Bacillus subtilis subsp. subtilis str. 168] Length = 295 Score = 269 bits (688), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 140/301 (46%), Positives = 201/301 (66%), Gaps = 6/301 (1%) Query: 3 LLTVANLRKVYGGHTPVDGISFDIEAGKCVALLGPNGAGKTTTLRMLAGLLKPTSGQISF 62 +L++ +L K Y H V +SF + +CVALLGPNGAGKTTTL+MLAGLL PTSG I Sbjct: 1 MLSIESLCKSYRHHEAVKNVSFHVNENECVALLGPNGAGKTTTLQMLAGLLSPTSGTIKL 60 Query: 63 EGGPVGDYRKRIGYLPQSPAFYNWMSGQEYVVFAAKLYGVSSKEAAGLAADVLEHVGLRD 122 G D R+ IGYLPQ PAFY+WM+ E++ FA +L G+S ++ ++LE VGL + Sbjct: 61 LGEKKLD-RRLIGYLPQYPAFYSWMTANEFLTFAGRLSGLSKRKCQEKIGEMLEFVGLHE 119 Query: 123 AARRKIGGYSGGMKQRLGLAQALIHRPRLLLLDEPVSALDPIGRREVMELLRGIREDTTV 182 AA ++IGGYSGGMKQRLGLAQAL+H+P+ L+LDEPVSALDP GR EV++++R +++ V Sbjct: 120 AAHKRIGGYSGGMKQRLGLAQALLHKPKFLILDEPVSALDPTGRFEVLDMMRELKKHMAV 179 Query: 183 IFSTHVLHDAEEICDDIILMNHGLIAEHGALSRLRSQYSIPVIRLTTEREEKAQRWLEDL 242 +FSTHVLHDAE++CD +++M +G I+ G L L+ Q V L+ +EK + WLE+ Sbjct: 180 LFSTHVLHDAEQVCDQVVIMKNGEISWKGELQELKQQQQTNVFTLSV--KEKLEGWLEEK 237 Query: 243 AHRSFVEQSAVSSGSATLNVKNVELARQIILQEAGNLDIPLLQFEAGSSTLEDLFMKVVG 302 + S + S A + ++ R +L + + + +FE + +LED+++KVV Sbjct: 238 PYVSAIVYKNPS--QAVFELPDIHAGRS-LLSDCIRKGLTVTRFEQKTESLEDVYLKVVH 294 Query: 303 A 303 A Sbjct: 295 A 295 >ref|NP_241156.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||B83686 ABC transporter (ATP-binding protein) BH0290 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04009.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 301 Score = 263 bits (672), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 121/298 (40%), Positives = 193/298 (64%), Gaps = 2/298 (0%) Query: 4 LTVANLRKVYGGHTPVDGISFDIEAGKCVALLGPNGAGKTTTLRMLAGLLKPTSGQISFE 63 L + ++ K Y T V S D+ +G+CV L+GPNGAGKTT ++M+ +L PT G I Sbjct: 3 LEIKSVTKKYKEKTAVHDFSMDLLSGECVGLIGPNGAGKTTLIKMITNILDPTRGDILLN 62 Query: 64 GGPVGDYRKRIGYLPQSPAFYNWMSGQEYVVFAAKLYGVSSKEAAGLAADVLEHVGLRDA 123 G + + ++ IGYLPQ P FY WM+ E ++F +L G+S K+ ++L VGLR Sbjct: 63 GKRISEMKREIGYLPQYPDFYQWMTASETLLFMGQLSGISKKKLTKSIPEILSKVGLRGE 122 Query: 124 ARRKIGGYSGGMKQRLGLAQALIHRPRLLLLDEPVSALDPIGRREVMELLRGIREDTTVI 183 K+ +SGGMKQRLG+AQAL+H+P +++DEPVSALDPIGRREV+ ++ I++D+T++ Sbjct: 123 ENSKVSTFSGGMKQRLGIAQALLHKPSFIVMDEPVSALDPIGRREVLNIIEEIKKDSTIL 182 Query: 184 FSTHVLHDAEEICDDIILMNHGLIAEHGALSRLRSQYSIPVIRLTTEREEKAQRWLEDLA 243 STH+L DAEEIC+ ++++ +G E + L ++ S IR+ E ++++ W+E + Sbjct: 183 LSTHILADAEEICERLVMIKNGEKIEDTTMMELLNRNSKNKIRV--EITDESKDWIEVVK 240 Query: 244 HRSFVEQSAVSSGSATLNVKNVELARQIILQEAGNLDIPLLQFEAGSSTLEDLFMKVV 301 ++V+ V+ + VKN+EL + ++L A D+ +++FE TLE+LF+K+V Sbjct: 241 KLNYVQDVEVTGNKVNVEVKNIELHKNMLLANALKHDVNIVKFELDHDTLEELFLKLV 298 >ref|NP_657208.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_845635.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP27121.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 302 Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 194/300 (64%), Gaps = 6/300 (2%) Query: 4 LTVANLRKVYGGHTPVDGISFDIEAGKCVALLGPNGAGKTTTLRMLAGLLKPTSGQISFE 63 L + N+ K + G V+ S +++AG+CV L+GPNGAGK+T +++++ + PT G++ Sbjct: 3 LEIKNVTKSFKGKIAVNNFSMELQAGECVGLIGPNGAGKSTLIKVISDITNPTDGEVLLN 62 Query: 64 GGPVGDYRKRIGYLPQSPAFYNWMSGQEYVVFAAKLYGVSSKEAAGLAADVLEHVGLRDA 123 G + + IGYLPQ P F++WM+ +E + F +L GV +E +LE VGL+ Sbjct: 63 GIKISKMKSEIGYLPQYPNFFHWMTARETLTFMGQLSGVKKEELLKSIPKMLEKVGLKGE 122 Query: 124 ARRKIGGYSGGMKQRLGLAQALIHRPRLLLLDEPVSALDPIGRREVMELLRGIREDTTVI 183 K+ +SGGMKQRLG+AQAL+H+P L+++DEPVSALDPIGRREV+ L+ I++DTT++ Sbjct: 123 ENTKVSTFSGGMKQRLGIAQALLHKPSLIVMDEPVSALDPIGRREVLNLIEEIKKDTTIL 182 Query: 184 FSTHVLHDAEEICDDIILMNHGLIAEHGALSRL--RSQYSIPVIRLTTEREEKAQRWLED 241 STH+L DAEEIC+ +++ G E ++ L R++ + VI +T K Q+W+E Sbjct: 183 LSTHILSDAEEICERFVIIKDGTKIEDTTITELLHRNRENKLVIEITA----KDQKWIEI 238 Query: 242 LAHRSFVEQSAVSSGSATLNVKNVELARQIILQEAGNLDIPLLQFEAGSSTLEDLFMKVV 301 + +V+ V + V+++E+++ ++LQ A + +++FE + TLE++F+K+V Sbjct: 239 VKKLPYVKNVEVVGLKIKVKVESIEISKNMLLQNALEHKVDIVKFEMSNDTLEEIFLKLV 298 >ref|NP_465751.1| similar to ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AC1353 ABC transporter (ATP-binding protein) homolog lmo2227 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00305.1| lmo2227 [Listeria monocytogenes] Length = 301 Score = 233 bits (593), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 120/302 (39%), Positives = 176/302 (58%), Gaps = 2/302 (0%) Query: 1 MPLLTVANLRKVYGGHTPVDGISFDIEAGKCVALLGPNGAGKTTTLRMLAGLLKPTSGQI 60 M L + L+K Y G + GI I +CVAL+GPNGAGK+T + M+ +L GQI Sbjct: 1 MKKLEIQGLKKKYNGKWVIKGIDLTINEKECVALIGPNGAGKSTMINMIVQILTQDEGQI 60 Query: 61 SFEGGPVGDYRKRIGYLPQSPAFYNWMSGQEYVVFAAKLYGVSSKEAAGLAADVLEHVGL 120 + +G R++IG+LPQ P FY WMS E + F KL + + +VL VGL Sbjct: 61 TLDGESAKLVREKIGFLPQYPEFYGWMSATECLHFMGKLSNMEKTDLKARINEVLLLVGL 120 Query: 121 RDAARRKIGGYSGGMKQRLGLAQALIHRPRLLLLDEPVSALDPIGRREVMELLRGIREDT 180 ++A +KI YSGGM+QRLG+AQA++HRP LL+LDEPVSALDPIGRRE+M LL ++++ Sbjct: 121 EESANKKISTYSGGMRQRLGIAQAILHRPELLVLDEPVSALDPIGRREMMLLLDKLKKEI 180 Query: 181 TVIFSTHVLHDAEEICDDIILMNHGLIAEHGALSRLRSQYSIPVIRLTTEREEKAQRWLE 240 T++FSTH+L DAEEICD I ++ +G + + +L + S PV E ++ W Sbjct: 181 TILFSTHILKDAEEICDRIAIIKNGELVADKTVVQLMEEESSPV--FDVEFNGNSEAWQT 238 Query: 241 DLAHRSFVEQSAVSSGSATLNVKNVELARQIILQEAGNLDIPLLQFEAGSSTLEDLFMKV 300 L +VE+ + N + + +L +D ++ E +LE++FM+ Sbjct: 239 LLLQNKYVEKIEKVGMVYQVYTTNQKAGSEAVLSSLLQIDGEFIRVENRHQSLEEIFMEK 298 Query: 301 VG 302 VG Sbjct: 299 VG 300 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 432,485,746 Number of extensions: 17635849 Number of successful extensions: 123579 Number of sequences better than 1.0e-05: 21156 Number of HSP's gapped: 99125 Number of HSP's successfully gapped: 22621 Length of query: 303 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 178 Effective length of database: 417,850,203 Effective search space: 74377336134 Effective search space used: 74377336134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)