BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0100.0002.p
         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_654470.1| hypothetical protein predicted by GeneMark [Bac...    77   2e-13
ref|NP_976920.1| conserved hypothetical protein [Bacillus cereus...    77   2e-13
ref|NP_241818.1| BH0952~unknown [Bacillus halodurans] >gi|416887...    75   6e-13
ref|NP_830357.1| hypothetical protein [Bacillus cereus ATCC 1457...    75   6e-13
sp|Q81I77|Y520_BACCR Hypothetical UPF0295 protein BC0520               75   7e-13

>ref|NP_654470.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_843073.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 sp|Q81YU3|Y538_BACAA Hypothetical UPF0295 protein BA0538
 gb|AAP24559.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 118

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 8/80 (10%)

Query: 42  IVAAIGLVIGLVSMIASLAIYFWAGMLSTSAVQVECPECHKLTKMLGKTDRCMFCHTILT 101
           I+    +++G +++IAS  +YFW GMLST  VQ+ CP C K TKMLG+ D CM C+  LT
Sbjct: 38  IIMTTFMMVGFLAVIASTVVYFWIGMLSTKTVQIICPSCDKPTKMLGRVDACMHCNQPLT 97

Query: 102 MDPAQATVTAEQLEGQQLKH 121
           MD          LEG++   
Sbjct: 98  MD--------RDLEGKEFDE 109


>ref|NP_976920.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS39528.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 118

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 8/80 (10%)

Query: 42  IVAAIGLVIGLVSMIASLAIYFWAGMLSTSAVQVECPECHKLTKMLGKTDRCMFCHTILT 101
           I+    +++G +++IAS  +YFW GMLST  VQ+ CP C K TKMLG+ D CM C+  LT
Sbjct: 38  IIMTTFMMVGFLAVIASTVVYFWIGMLSTKTVQIICPSCDKPTKMLGRVDACMHCNQPLT 97

Query: 102 MDPAQATVTAEQLEGQQLKH 121
           MD          LEG++   
Sbjct: 98  MD--------RNLEGKEFDE 109


>ref|NP_241818.1| BH0952~unknown [Bacillus halodurans]
 sp|Q9KEA2|Y952_BACHD Hypothetical UPF0295 protein BH0952
 pir||H83768 hypothetical protein BH0952 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB04671.1| BH0952~unknown [Bacillus halodurans]
          Length = 121

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 8/81 (9%)

Query: 41  KIVAAIGLVIGLVSMIASLAIYFWAGMLSTSAVQVECPECHKLTKMLGKTDRCMFCHTIL 100
           +++  + +++G + +IAS A+YFW GM+ST A+ V CPEC K TK+LG+ D CM C   L
Sbjct: 37  EVIMVLAMILGFLCIIASTAVYFWIGMISTRAIPVVCPECGKPTKVLGRVDACMHCDQPL 96

Query: 101 TMDPAQATVTAEQLEGQQLKH 121
           T+D          LEG++   
Sbjct: 97  TLD--------RSLEGKEFDE 109


>ref|NP_830357.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP07558.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 120

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 8/80 (10%)

Query: 42  IVAAIGLVIGLVSMIASLAIYFWAGMLSTSAVQVECPECHKLTKMLGKTDRCMFCHTILT 101
           I+    +++G +++IAS  +YFW GMLST  +Q+ CP C K TKMLG+ D CM C+  LT
Sbjct: 40  IIMTTFMMVGFLAVIASTVVYFWIGMLSTKTIQIICPSCDKPTKMLGRVDACMHCNQPLT 99

Query: 102 MDPAQATVTAEQLEGQQLKH 121
           +D          LEG++   
Sbjct: 100 LD--------RDLEGKEFDE 111


>sp|Q81I77|Y520_BACCR Hypothetical UPF0295 protein BC0520
          Length = 118

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 8/80 (10%)

Query: 42  IVAAIGLVIGLVSMIASLAIYFWAGMLSTSAVQVECPECHKLTKMLGKTDRCMFCHTILT 101
           I+    +++G +++IAS  +YFW GMLST  +Q+ CP C K TKMLG+ D CM C+  LT
Sbjct: 38  IIMTTFMMVGFLAVIASTVVYFWIGMLSTKTIQIICPSCDKPTKMLGRVDACMHCNQPLT 97

Query: 102 MDPAQATVTAEQLEGQQLKH 121
           +D          LEG++   
Sbjct: 98  LD--------RDLEGKEFDE 109


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.326    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 117,322,891
Number of extensions: 3231083
Number of successful extensions: 16409
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 16409
Number of HSP's successfully gapped: 9
Length of query: 121
Length of database: 757,237,578
Length adjustment: 85
Effective length of query: 36
Effective length of database: 526,454,163
Effective search space: 18952349868
Effective search space used: 18952349868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 120 (50.8 bits)