BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0097.0003.p
         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769434.1| transcriptional regulatory protein [Bradyrhizob...    74   9e-13
ref|NP_435418.1| putative AraC-type regulator [Sinorhizobium mel...    73   2e-12
ref|NP_767752.1| transcriptional regulatory protein [Bradyrhizob...    72   3e-12
ref|NP_771760.1| transcriptional regulatory protein [Bradyrhizob...    71   8e-12
gb|EAF99599.1| unknown [environmental sequence]                        71   9e-12

>ref|NP_769434.1| transcriptional regulatory protein [Bradyrhizobium japonicum]
 dbj|BAC48059.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 341

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 51/73 (69%)

Query: 2   GLSKFHLLRTFSKYVGLTPNEYLNRTRIERAIELLTATDLSIEAIASQVGYSSGSYFIKV 61
           GLS+FH  R F +  GL+P+ +L + R+E+A+ +L  +D S+ ++A+ +GYSS + F   
Sbjct: 265 GLSRFHFCRAFKESTGLSPHAWLRQHRLEQAMNMLRESDESVVSVAAALGYSSQTAFAAA 324

Query: 62  FQKLTGQTPGSFR 74
           F+KLTG+TP  +R
Sbjct: 325 FKKLTGETPSDWR 337


>ref|NP_435418.1| putative AraC-type regulator [Sinorhizobium meliloti 1021]
 pir||D95283 probable AraC-type regulator [imported] - Sinorhizobium meliloti
           (strain 1021) magaplasmid pSymA
 gb|AAK64830.1| putative AraC-type regulator [Sinorhizobium meliloti]
          Length = 333

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 47/76 (61%)

Query: 1   MGLSKFHLLRTFSKYVGLTPNEYLNRTRIERAIELLTATDLSIEAIASQVGYSSGSYFIK 60
           +G+S+FH  R F K  GL+P+ Y  R R+ RA  LL  TD SI  I   VGYSS S+F +
Sbjct: 258 VGMSEFHFSRLFKKATGLSPSRYFIRQRVARAQLLLQETDTSIIEIGMSVGYSSPSHFAQ 317

Query: 61  VFQKLTGQTPGSFRSG 76
           VF++ TG  P  +R G
Sbjct: 318 VFRRETGLPPSHYRRG 333


>ref|NP_767752.1| transcriptional regulatory protein [Bradyrhizobium japonicum]
 dbj|BAC46377.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 279

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 47/76 (61%)

Query: 2   GLSKFHLLRTFSKYVGLTPNEYLNRTRIERAIELLTATDLSIEAIASQVGYSSGSYFIKV 61
           GLS FH LR FS  +G+TP++YL R+R+  A  LLT  D+++  +A  VG+   S F++ 
Sbjct: 190 GLSPFHFLRLFSAVLGVTPHQYLVRSRLRHAARLLTEDDIAVTDVAYDVGFGDLSNFVRT 249

Query: 62  FQKLTGQTPGSFRSGS 77
           F +  G +P  FR  S
Sbjct: 250 FHRAAGVSPTKFRQAS 265


>ref|NP_771760.1| transcriptional regulatory protein [Bradyrhizobium japonicum]
 dbj|BAC50385.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 362

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 49/73 (67%)

Query: 2   GLSKFHLLRTFSKYVGLTPNEYLNRTRIERAIELLTATDLSIEAIASQVGYSSGSYFIKV 61
           GLS+FH  R F +  GL+P+ +L + R+E+A+ +L  TD S+ +IA+ +GY+S + F   
Sbjct: 286 GLSRFHFCRAFKESTGLSPHAWLRQYRLEQAMNMLRDTDDSVVSIAAALGYASQTAFAAA 345

Query: 62  FQKLTGQTPGSFR 74
           F+KL G TP  +R
Sbjct: 346 FRKLAGVTPSDWR 358


>gb|EAF99599.1| unknown [environmental sequence]
          Length = 130

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 46/67 (68%)

Query: 8   LLRTFSKYVGLTPNEYLNRTRIERAIELLTATDLSIEAIASQVGYSSGSYFIKVFQKLTG 67
           LLR F +  GLTP +YL R RI  A + LT +  S+E +ASQVG++  + F K F++L G
Sbjct: 58  LLRRFKQATGLTPGDYLQRLRISLAQQALTDSAQSLEQVASQVGFADRATFAKRFKQLCG 117

Query: 68  QTPGSFR 74
           +TPG+FR
Sbjct: 118 ETPGAFR 124


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 120,498,783
Number of extensions: 3767468
Number of successful extensions: 12353
Number of sequences better than 1.0e-05: 355
Number of HSP's gapped: 12539
Number of HSP's successfully gapped: 355
Length of query: 87
Length of database: 757,237,578
Length adjustment: 56
Effective length of query: 31
Effective length of database: 605,192,034
Effective search space: 18760953054
Effective search space used: 18760953054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)