BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0091.0004.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693915.1| hypothetical protein OB2993 [Oceanobacillus ihe... 71 2e-11 ref|NP_391575.1| alternate gene name: ipc-30d~similar to hypothe... 69 4e-11 ref|NP_653782.1| DUF204, Domain of unknown function DUF [Bacillu... 64 2e-09 ref|NP_834986.1| Integral membrane protein [Bacillus cereus ATCC... 64 3e-09 ref|NP_981743.1| membrane protein, putative [Bacillus cereus ATC... 63 3e-09 >ref|NP_693915.1| hypothetical protein OB2993 [Oceanobacillus iheyensis HTE831] dbj|BAC14949.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 182 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Query: 14 QIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVGH 73 +I++I ++AI L MD FS+ +G+GM+ +RL + + L I F H+LMPL G+ G + Sbjct: 6 EIISIILLAIGLSMDGFSVSLGLGMQQLRLKRIAYIGLTIGFLHMLMPLAGMLLGQVISE 65 Query: 74 LLGQVTTYAAXXXXXXXXXHMVFNSFR-ADHSRREPVN 110 +GQ T++A HM F++FR + R +PV Sbjct: 66 QIGQWTSFAGGVLLFLIGAHMFFSAFRLTEGFRWQPVG 103 >ref|NP_391575.1| alternate gene name: ipc-30d~similar to hypothetical proteins [Bacillus subtilis] sp|P39154|YWLD_BACSU Hypothetical protein ywlD pir||I40478 conserved hypothetical protein ywlD - Bacillus subtilis emb|CAA86106.1| Unknown [Bacillus subtilis] emb|CAB15711.1| ywlD [Bacillus subtilis subsp. subtilis str. 168] prf||2108403E ipc-30d gene Length = 185 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 54/93 (58%) Query: 13 GQIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVG 72 G+++T++IMA ALGMDAFS+G+G+GM +R + + +I FHV+MPL G+ G+ + Sbjct: 7 GELITLSIMAFALGMDAFSVGLGMGMVKLRKKQIFYIGFIIGLFHVIMPLAGMAAGNMLS 66 Query: 73 HLLGQVTTYAAXXXXXXXXXHMVFNSFRADHSR 105 LLG + Y M+ SF+ R Sbjct: 67 GLLGVLAVYIGGALLFVLGVQMLMASFKQSEER 99 >ref|NP_653782.1| DUF204, Domain of unknown function DUF [Bacillus anthracis A2012] ref|NP_847724.1| membrane protein, putative [Bacillus anthracis str. Ames] gb|AAP29210.1| membrane protein, putative [Bacillus anthracis str. Ames] Length = 182 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 14 QIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVGH 73 Q++ + IMA ALGMDAFS+ +G+GM +++ +L + + I FH++MP +G+ G ++ Sbjct: 5 QLIPLIIMAFALGMDAFSVSLGMGMMALKIRQILYIGVTIGIFHIIMPFIGMVLGRFLSE 64 Query: 74 LLGQVTTYAAXXXXXXXXXHMVFNS-FRADHSRREPVNHRTF 114 G + +A ++V++S + +R P+ F Sbjct: 65 QYGDIAHFAGAILLIGLGFYIVYSSILENEETRTAPIGISLF 106 >ref|NP_834986.1| Integral membrane protein [Bacillus cereus ATCC 14579] gb|AAP12187.1| Integral membrane protein [Bacillus cereus ATCC 14579] Length = 182 Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 14 QIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVGH 73 Q++ + IMA ALGMDAFS+ +G+GM ++L +L + + I FH++MP +G+ G ++ Sbjct: 5 QLIPLIIMAFALGMDAFSVSLGMGMMPLKLRQILYIGMTIGIFHIIMPFIGMVLGRFLSE 64 Query: 74 LLGQVTTYAAXXXXXXXXXHMVFNS-FRADHSRREPVNHRTF 114 G + +A ++V+++ + + +R P+ F Sbjct: 65 KYGDIAHFAGAILLIGLGFYIVYSTILQNEETRTAPIGISLF 106 >ref|NP_981743.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS44351.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 182 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 1/102 (0%) Query: 14 QIVTIAIMAIALGMDAFSLGVGIGMKGIRLLHVLQLSLLIAFFHVLMPLLGLFTGSYVGH 73 Q++ + IMA ALGMDAFS+ +G+GM +++ +L + + I FH++MP +G+ G ++ Sbjct: 5 QLIPLIIMAFALGMDAFSVSLGMGMMTLKIRQILYIGVTIGIFHIIMPFIGMVLGRFLSE 64 Query: 74 LLGQVTTYAAXXXXXXXXXHMVFNS-FRADHSRREPVNHRTF 114 G + +A ++V++S + +R P+ F Sbjct: 65 QYGDIAHFAGAILLIGLGFYIVYSSILENEETRTAPIGISLF 106 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.144 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 166,760,870 Number of extensions: 5444095 Number of successful extensions: 15574 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 15586 Number of HSP's successfully gapped: 7 Length of query: 192 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 73 Effective length of database: 434,140,797 Effective search space: 31692278181 Effective search space used: 31692278181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 122 (51.6 bits)