BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0091.0003.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_693910.1| protein-tyrosine-phosphatase [Oceanobacillus ih... 120 1e-26 ref|NP_244636.1| protein-tyrosine-phosphatase [Bacillus halodura... 107 2e-22 ref|NP_981736.1| low molecular weight phosphotyrosine protein ph... 96 6e-19 ref|NP_621846.1| Ribose 5-phosphate isomerase RpiB [Thermoanaero... 94 2e-18 ref|NP_834981.1| Protein tyrosine phosphatase [Bacillus cereus A... 93 4e-18 >ref|NP_693910.1| protein-tyrosine-phosphatase [Oceanobacillus iheyensis HTE831] dbj|BAC14944.1| protein-tyrosine-phosphatase [Oceanobacillus iheyensis HTE831] Length = 200 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 105/204 (51%), Gaps = 23/204 (11%) Query: 7 LHILFVCTGNTCRSPMAEGLLRKLAKERGIDVEVRSAGVSAISGTSMSRHAAAILRDEGI 66 +++LF+CTGNTCRSPMAEGLL K + V+SAG +A+ + S H L ++GI Sbjct: 1 MNVLFICTGNTCRSPMAEGLL----KSKMPAFNVKSAGTAAMDRSPASNHTMQALSEKGI 56 Query: 67 HDQILSTQLNAETVAWADLVLTLTGGHKRHLLQYFPDAVAKTYTLKEYVYDEEAVNADIR 126 S +N E + WAD+VLT+T HK+ L+ FP+ +K +TLKEYV EA Sbjct: 57 DMHHYSQSVNEELLEWADIVLTMTTSHKQSLIIQFPEQQSKYFTLKEYV--SEADKEIWG 114 Query: 127 ELDSLYADAELSLALG-------------GEPKSADLQRIIEIRQRIPS----FDISDPF 169 ++ YAD E AL + S + Q I QR+ S +DISDPF Sbjct: 115 QIQKAYADLEEKRALFIQKHQHMMNNFQLHQSVSKEFQTEINEIQRLESKLINYDISDPF 174 Query: 170 GGPREDYELAAAEIRTALHSLLDK 193 GG + Y EI + + K Sbjct: 175 GGGLDQYRNTMKEIEDCIDLFVQK 198 >ref|NP_244636.1| protein-tyrosine-phosphatase [Bacillus halodurans] pir||A84121 protein-tyrosine-phosphatase BH3769 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07488.1| protein-tyrosine-phosphatase [Bacillus halodurans] Length = 161 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 94/192 (48%), Gaps = 45/192 (23%) Query: 9 ILFVCTGNTCRSPMAEGLLRKLAKERGIDVEVRSAGVSAISGTSMSRHAAAILRDEGIHD 68 +LFVCTGNTCRSPMAE L R+ K +G VEV+SAG+ A G S A+L++ GI Sbjct: 6 VLFVCTGNTCRSPMAEALFRQ--KSKG-SVEVKSAGLFAFFGGKASEGTTAVLKERGISF 62 Query: 69 QILSTQLNAETVAWADLVLTLTGGHKRHLLQYFPDAVA-KTYTLKEYVYDEEAVNADIRE 127 + ST L E V WADLVLT+T HK+ ++ +A K +TLKE+ Sbjct: 63 EHTSTPLTKELVQWADLVLTMTENHKQQVIALDDEANGEKVFTLKEF------------- 109 Query: 128 LDSLYADAELSLALGGEPKSADLQRIIEIRQRIPSFDISDPFGGPREDYELAAAEIRTAL 187 ALG S DI DPFGG E+Y A E+ + Sbjct: 110 ------------ALGDS----------------GSLDIIDPFGGSLEEYRQMAHEVEMCV 141 Query: 188 HSLLDKLESLRR 199 +LL+K +R Sbjct: 142 EALLEKTREEQR 153 >ref|NP_981736.1| low molecular weight phosphotyrosine protein phosphatase family protein [Bacillus cereus ATCC 10987] gb|AAS44344.1| low molecular weight phosphotyrosine protein phosphatase family protein [Bacillus cereus ATCC 10987] Length = 146 Score = 95.5 bits (236), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 87/188 (46%), Gaps = 46/188 (24%) Query: 6 MLHILFVCTGNTCRSPMAEGLLRKLAKERGIDVEVRSAGVSAISGTSMSRHAAAILRDEG 65 M +LFVCTGNTCRSPMAE LLR + + EV+SAGV A G+ S HA L ++G Sbjct: 1 MKRVLFVCTGNTCRSPMAEALLRHYGEGK---FEVQSAGVFAYPGSDASVHAKEALAEKG 57 Query: 66 IHDQILSTQLNAETVAWADLVLTLTGGHKRHLLQYFPDAVAKTYTLKEYVYDEEAVNADI 125 I S Q+N + WAD+++T+T HK +L ++P K Sbjct: 58 IAIDHASQQVNEALIDWADIIVTMTENHKEIILGHYPSVEGK------------------ 99 Query: 126 RELDSLYADAELSLALGGEPKSADLQRIIEIRQRIPSFDISDPFGGPREDYELAAAEIRT 185 +D+LY E G K DISDPFGG Y+ E+ Sbjct: 100 --VDTLYGLTE------GMSK-----------------DISDPFGGSLSIYKETLEEMEK 134 Query: 186 ALHSLLDK 193 + +LL K Sbjct: 135 LVQTLLKK 142 >ref|NP_621846.1| Ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis] gb|AAM23450.1| Ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis] Length = 302 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 89/197 (45%), Gaps = 48/197 (24%) Query: 7 LHILFVCTGNTCRSPMAEGLLRKLAKERGIDVEVRSAGVSAISGTSMSRHAAAILRDE-- 64 + +LFVCTGNTCRSPMAEG+ +K G D E +SAGV A G S A +L+ E Sbjct: 1 MRVLFVCTGNTCRSPMAEGIFNAKSKALGKDWEAKSAGVFAPEGFPASSEAVEVLKKEYG 60 Query: 65 -GIHDQILSTQLNAETVAWADLVLTLTGGHKRHLLQYFPDAVAKTYTLKEYVYDEEAVNA 123 I D + L E + ADLVL + HKR L+ +P+ K +T+KE+V Sbjct: 61 IDISDH-RAKSLREEDLKGADLVLAMAFSHKRSLVSQYPEYADKIFTIKEFV-------- 111 Query: 124 DIRELDSLYADAELSLALGGEPKSADLQRIIEIRQRIPSFDISDPFGGPREDYELAAAEI 183 L G D+ DP+G P E Y+ A E+ Sbjct: 112 ----------------GLEG--------------------DVEDPYGMPLEVYKKTAEEL 135 Query: 184 RTALHSLLDKLESLRRL 200 + L++KL R++ Sbjct: 136 SGLIDKLIEKLSEERKV 152 >ref|NP_834981.1| Protein tyrosine phosphatase [Bacillus cereus ATCC 14579] gb|AAP12182.1| Protein tyrosine phosphatase [Bacillus cereus ATCC 14579] Length = 146 Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 89/188 (47%), Gaps = 46/188 (24%) Query: 6 MLHILFVCTGNTCRSPMAEGLLRKLAKERGIDVEVRSAGVSAISGTSMSRHAAAILRDEG 65 M +LFVCTGNTCRSPMAE LLR ++ EV+SAGV A G+ S HA L ++G Sbjct: 1 MKRVLFVCTGNTCRSPMAEALLRHHGGDK---FEVQSAGVFAYPGSDASVHAKEALAEKG 57 Query: 66 IHDQILSTQLNAETVAWADLVLTLTGGHKRHLLQYFPDAVAKTYTLKEYVYDEEAVNADI 125 I + Q+N + WAD+V+T+T HK+ +L ++P K Sbjct: 58 ISIDHAAQQVNETLLDWADIVVTMTENHKQIVLGHYPSVEKK------------------ 99 Query: 126 RELDSLYADAELSLALGGEPKSADLQRIIEIRQRIPSFDISDPFGGPREDYELAAAEIRT 185 L++LY L+ +G DISDPFGG Y+ E+ Sbjct: 100 --LNTLYG---LTEGIGK--------------------DISDPFGGSLSIYKETLDEMEK 134 Query: 186 ALHSLLDK 193 + +LL K Sbjct: 135 LVQTLLKK 142 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 275,044,464 Number of extensions: 10336912 Number of successful extensions: 30127 Number of sequences better than 1.0e-05: 68 Number of HSP's gapped: 30130 Number of HSP's successfully gapped: 68 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)