BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0091.0002.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391572.1| alternate gene name: ipc-33d [Bacillus subtilis... 177 2e-43 ref|NP_244633.1| BH3766~unknown conserved protein in B. subtilis... 169 3e-41 ref|NP_847717.1| conserved hypothetical protein TIGR01440 [Bacil... 169 4e-41 ref|NP_981734.1| conserved hypothetical protein TIGR01440 [Bacil... 168 7e-41 ref|ZP_00180290.1| hypothetical protein Mther179501 [Moorella th... 166 3e-40 >ref|NP_391572.1| alternate gene name: ipc-33d [Bacillus subtilis] sp|P39157|YWLG_BACSU Hypothetical protein ywlG pir||I40482 hypothetical protein ywlG - Bacillus subtilis emb|CAA86109.1| Unknown [Bacillus subtilis] emb|CAB15708.1| ywlG [Bacillus subtilis subsp. subtilis str. 168] prf||2108403H ipc-33d gene Length = 180 Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 120/177 (67%), Gaps = 2/177 (1%) Query: 30 ELSLTAATAAVVRELSDAGKLGPGKILVVGASTSEVAGVRIGTGGALEVAQQLLEGIVQV 89 EL T T ++ E D +L ++ V+G STSEVAG RIGT G++++A+ + G+ ++ Sbjct: 3 ELKQTWKT--MLSEFQDQAELKQDQLFVLGCSTSEVAGSRIGTSGSVDIAESIYSGLAEL 60 Query: 90 AAEKGFHPVYQCCEHLNRSLVMERSLLEKLGLREVSAVPIPGAGGSMAAAAYRSMADPVL 149 + G H +QCCEHLNR+LV+E + L VSAVP+P AGG+MA+ A++ M PVL Sbjct: 61 REKTGIHLAFQCCEHLNRALVVEAETAKLFRLPTVSAVPVPKAGGAMASYAFKQMKSPVL 120 Query: 150 AETVEAHAGIDIGETLIGMHLRRVAVPFRPSLRYIGSARVNAAWSRPPLIGGERAVY 206 ET++A AGIDIG+T IGMHL+ VAVP R S +GSA V A +RP LIGG RAVY Sbjct: 121 VETIQADAGIDIGDTFIGMHLKPVAVPVRVSQNSLGSAHVTLARTRPKLIGGVRAVY 177 >ref|NP_244633.1| BH3766~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||F84120 hypothetical protein BH3766 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07485.1| BH3766~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 188 Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/187 (46%), Positives = 112/187 (59%) Query: 31 LSLTAATAAVVRELSDAGKLGPGKILVVGASTSEVAGVRIGTGGALEVAQQLLEGIVQVA 90 +++ V+ +L A L +LV+G STSEVAG +IGT + +VA L + Sbjct: 2 MTIQQQLETVLGDLQKAKPLSSKHLLVIGVSTSEVAGKQIGTNSSKDVAAALYAALFSYQ 61 Query: 91 AEKGFHPVYQCCEHLNRSLVMERSLLEKLGLREVSAVPIPGAGGSMAAAAYRSMADPVLA 150 + G +QCCEHLNR+LVMER E G EV+ +P+ AGG+MA A+ DPV+ Sbjct: 62 QKTGVALAFQCCEHLNRALVMERDEAEARGYEEVAVIPVRKAGGAMATYAFTQFRDPVIV 121 Query: 151 ETVEAHAGIDIGETLIGMHLRRVAVPFRPSLRYIGSARVNAAWSRPPLIGGERAVYRNPE 210 E + A AGIDIG+T IGMHL+RVAVP R S+ IG A V A+SRP LIGG RA Y E Sbjct: 122 EQIRADAGIDIGDTFIGMHLKRVAVPVRSSISAIGDAHVTMAYSRPKLIGGVRANYERTE 181 Query: 211 TSGSRSC 217 S C Sbjct: 182 EHESFRC 188 >ref|NP_847717.1| conserved hypothetical protein TIGR01440 [Bacillus anthracis str. Ames] gb|AAP29203.1| conserved hypothetical protein TIGR01440 [Bacillus anthracis str. Ames] Length = 190 Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 82/170 (48%), Positives = 109/170 (64%) Query: 43 ELSDAGKLGPGKILVVGASTSEVAGVRIGTGGALEVAQQLLEGIVQVAAEKGFHPVYQCC 102 + + L G+I VVG STSEV G RIGT G +EVA+ + + Q + G +QCC Sbjct: 17 DFQEQASLQSGQIFVVGCSTSEVLGERIGTSGTMEVAEAIFSELKQFQEQTGIELAFQCC 76 Query: 103 EHLNRSLVMERSLLEKLGLREVSAVPIPGAGGSMAAAAYRSMADPVLAETVEAHAGIDIG 162 EHLNR+LV+ER L K V+ P+ AGG++A AY ++ DPV+ E ++A AG+DIG Sbjct: 77 EHLNRALVVERELAMKYQFEIVTVTPVRSAGGALATYAYHNLKDPVVIEFIKADAGMDIG 136 Query: 163 ETLIGMHLRRVAVPFRPSLRYIGSARVNAAWSRPPLIGGERAVYRNPETS 212 +T IGMHL+ VAVP R S++ IGSA V A +R LIGG RAVY E + Sbjct: 137 DTFIGMHLKHVAVPVRTSVKEIGSAHVTMATTRGKLIGGARAVYAAKEET 186 >ref|NP_981734.1| conserved hypothetical protein TIGR01440 [Bacillus cereus ATCC 10987] gb|AAS44342.1| conserved hypothetical protein TIGR01440 [Bacillus cereus ATCC 10987] Length = 190 Score = 168 bits (426), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 81/170 (47%), Positives = 109/170 (64%) Query: 43 ELSDAGKLGPGKILVVGASTSEVAGVRIGTGGALEVAQQLLEGIVQVAAEKGFHPVYQCC 102 + + L G+I VVG STSEV G RIGT G +EVA+ + + Q + G +QCC Sbjct: 17 DFQEQASLQSGQIFVVGCSTSEVLGERIGTSGTMEVAEAIFSELKQFQEQTGIELAFQCC 76 Query: 103 EHLNRSLVMERSLLEKLGLREVSAVPIPGAGGSMAAAAYRSMADPVLAETVEAHAGIDIG 162 EHLNR+LV+E+ L K V+ P+ AGG++A AY ++ DPV+ E ++A AG+DIG Sbjct: 77 EHLNRALVVEKELAMKYQFEIVTVTPVRSAGGALATYAYHNLKDPVVIEFIKADAGMDIG 136 Query: 163 ETLIGMHLRRVAVPFRPSLRYIGSARVNAAWSRPPLIGGERAVYRNPETS 212 +T IGMHL+ VAVP R S++ IGSA V A +R LIGG RAVY E + Sbjct: 137 DTFIGMHLKHVAVPVRTSVKEIGSAHVTMATTRGKLIGGARAVYAAKEET 186 >ref|ZP_00180290.1| hypothetical protein Mther179501 [Moorella thermoacetica ATCC 39073] Length = 183 Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 117/177 (66%), Gaps = 2/177 (1%) Query: 33 LTAATAAVVRELSDAGKLGPGKILVVGASTSEVAGVRIGTGGALEVAQQLLEGIVQVAAE 92 +TA A EL + L PG+ILVVG STSE+ G IGT +LE+ Q ++ G++ Sbjct: 7 VTATVQAAAEELLNVAGLQPGQILVVGCSTSEITGRSIGTASSLEIGQAVVAGLLAATNR 66 Query: 93 KGFHPVYQCCEHLNRSLVMERSLLEKLGLREVSAVPIPGAGGSMAAAAYRSMADPVLAET 152 + QCCEHLNR+LV+E L V+ VP P AGGS+A AAY S+ PV+ + Sbjct: 67 AQVYLAAQCCEHLNRALVIEAGAASLYNLPVVTVVPAPKAGGSLATAAYASLHRPVVVAS 126 Query: 153 V--EAHAGIDIGETLIGMHLRRVAVPFRPSLRYIGSARVNAAWSRPPLIGGERAVYR 207 + +AHAG+DIG TLIGMHLR VAVP R +++ IG+A V AA +RPPLIGG+RAVY+ Sbjct: 127 LLAQAHAGLDIGSTLIGMHLRPVAVPVRLAIKTIGAAPVTAARTRPPLIGGQRAVYK 183 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 306,541,814 Number of extensions: 11611067 Number of successful extensions: 38330 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 38327 Number of HSP's successfully gapped: 24 Length of query: 218 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 97 Effective length of database: 428,710,599 Effective search space: 41584928103 Effective search space used: 41584928103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)