BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0011.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241398.1| BH0532~unknown conserved protein in B. subtilis... 178 4e-44 ref|NP_784344.1| unknown [Lactobacillus plantarum WCFS1] >gi|410... 169 2e-41 ref|NP_654186.1| hypothetical protein predicted by GeneMark [Bac... 167 7e-41 ref|NP_976605.1| conserved hypothetical protein [Bacillus cereus... 166 2e-40 ref|NP_372586.1| conserved hypothetical protein [Staphylococcus ... 164 8e-40 >ref|NP_241398.1| BH0532~unknown conserved protein in B. subtilis [Bacillus halodurans] sp|Q9JWQ2|SPRL_BACHD Protein sprT-like pir||D83716 hypothetical protein BH0532 [imported] - Bacillus halodurans (strain C-125) dbj|BAA90855.1| YdcK [Bacillus halodurans] dbj|BAB04251.1| BH0532~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 151 Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 104/151 (68%), Gaps = 2/151 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M+ +ELQQ +E +S SFG+ FRHKA FN RL TTGGRY + SH+IE+NP LE+FG +E Sbjct: 1 MTEQELQQLVEDISLKSFGMKFRHKARFNPRLRTTGGRYLLHSHDIELNPKHLELFGLDE 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 IIKHELCHYHLHL K+GY HRDADFK LL V R+C +P A+ + R+ V Sbjct: 61 LIGIIKHELCHYHLHLQKKGYHHRDADFKLLLKEVDAPRYCAKIP--HAQNSVKTRHLYV 118 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLV 151 CT C T + RKR+ D RY CG C G+LK + Sbjct: 119 CTGCGTRFERKREVDTSRYVCGKCNGRLKKI 149 >ref|NP_784344.1| unknown [Lactobacillus plantarum WCFS1] sp|Q88Z10|SPRL_LACPL Protein sprT-like emb|CAD63185.1| unknown [Lactobacillus plantarum WCFS1] Length = 148 Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 82/151 (54%), Positives = 99/151 (65%), Gaps = 3/151 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M++ ELQQ + +S F PF+H+A FN+RL TTGGRY + SH+I+INP L F Sbjct: 1 MTDLELQQLVATISMHDFHRPFQHRAYFNARLRTTGGRYQLASHDIDINPKMLTDFDEAT 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 +IKHELCHYHLHL+KRGY HRDADFK+LLA VGGSR+ P K PYRY Sbjct: 61 LIGVIKHELCHYHLHLTKRGYRHRDADFKRLLAQVGGSRYA---PAPKQATARPYRYIYE 117 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLV 151 C C Y RKR+ D +RY CG C G +KLV Sbjct: 118 CQRCGRRYYRKRRMDTRRYTCGRCQGPIKLV 148 >ref|NP_654186.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_842810.1| conserved hypothetical protein [Bacillus anthracis str. Ames] sp|Q81VF1|SPRL_BACAA Protein sprT-like gb|AAP24296.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 152 Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 77/151 (50%), Positives = 102/151 (67%), Gaps = 3/151 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M +E+Q+ +E+VS FG+PF HKA FNSRL TTGGRY + +HNIE+N EM+G+EE Sbjct: 1 MDEQEIQRLVEEVSLQYFGMPFLHKAMFNSRLRTTGGRYLLNTHNIELNYRYYEMYGKEE 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 I+KHELCHYHLH++ RGY HRD DF++LL V RFC+ + A+ K + Y Sbjct: 61 LVGIVKHELCHYHLHITGRGYKHRDKDFRELLKAVDAPRFCKRMVNAEKEKRV---YVYE 117 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLV 151 C C +Y R+R+ + KRY CG C GKL L+ Sbjct: 118 CMECLLQYVRRRQINTKRYVCGKCKGKLNLI 148 >ref|NP_976605.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39213.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 152 Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 76/151 (50%), Positives = 102/151 (67%), Gaps = 3/151 (1%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M +E+Q+ +E+VS FG+PF HKA FNSRL TTGGRY + +HNIE+N EM+G+EE Sbjct: 1 MDEQEIQRLVEEVSLQYFGMPFLHKALFNSRLRTTGGRYLLNTHNIELNYRYYEMYGKEE 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 I+KHELCHYHLH++ RGY HRD DF++LL V RFC+ + + K + Y Sbjct: 61 LVGIVKHELCHYHLHITGRGYKHRDKDFRELLKAVDAPRFCKRMMNEEKEKKV---YMYE 117 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKLV 151 C C+ +Y R+R+ + KRY CG C GKL L+ Sbjct: 118 CMGCSLQYVRRRQINTKRYVCGKCKGKLILI 148 >ref|NP_372586.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_375170.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] ref|NP_646803.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] sp|Q99SJ0|SPRL_STAAM Protein sprT-like pir||D89998 conserved hypothetical protein SA1867 [imported] - Staphylococcus aureus (strain N315) dbj|BAB43149.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB58224.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB95851.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 151 Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 101/150 (67%), Gaps = 4/150 (2%) Query: 1 MSNEELQQWIEQVSQDSFGVPFRHKASFNSRLSTTGGRYFIKSHNIEINPMQLEMFGREE 60 M+N++LQ+ +E +S++ FG FRH A FN RL TTGGRY +KSH+IEINP Q E +G + Sbjct: 1 MNNDKLQRMVENLSEEKFGRTFRHCAYFNKRLRTTGGRYLLKSHDIEINPKQYEHYGEDA 60 Query: 61 TERIIKHELCHYHLHLSKRGYMHRDADFKKLLAMVGGSRFCQTLPGAKARKPLPYRYKLV 120 +II HELCHYHLH++ +GY H+D DFK+L VG RFC ++ + R Y+ Sbjct: 61 VVKIILHELCHYHLHIAGKGYQHKDQDFKRLSQQVGAPRFCNSIESYQQRAN----YEYY 116 Query: 121 CTACATEYPRKRKADPKRYRCGNCAGKLKL 150 CT C +Y R RK D R RCG+C GKL++ Sbjct: 117 CTKCHAKYIRIRKVDTNRMRCGHCNGKLRM 146 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 241,335,061 Number of extensions: 8929232 Number of successful extensions: 17232 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 17208 Number of HSP's successfully gapped: 24 Length of query: 161 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 45 Effective length of database: 442,286,094 Effective search space: 19902874230 Effective search space used: 19902874230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)