BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0009.p (97 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832916.1| Leucine-responsive regulatory protein [Bacillus... 60 2e-08 ref|NP_657077.1| HTH_ASNC, helix_turn_helix ASNC type [Bacillus ... 58 6e-08 ref|NP_520439.1| PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralst... 58 8e-08 ref|NP_388386.1| transcriptional regulator (Lrp/AsnC family) [Ba... 54 2e-06 ref|NP_241078.1| transcriptional regulator (Lrp/AsnC family) [Ba... 53 2e-06 >ref|NP_832916.1| Leucine-responsive regulatory protein [Bacillus cereus ATCC 14579] gb|AAP10117.1| Leucine-responsive regulatory protein [Bacillus cereus ATCC 14579] Length = 146 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 6 IIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVSGEGCYWMR 65 +I Y ++ P K+ +NI A I +F +S + F +F V +L+R+SGE Y M+ Sbjct: 52 VIAAYRTKFEPSKINKNIQAFI-MFKTSQCSD--FIQFCNAAPEVTDLYRISGEFNYMMK 108 Query: 66 VYAKDHDELATFLDQLLEFG 85 V + D LA FLD L++FG Sbjct: 109 VMSDSMDSLAAFLDSLMQFG 128 >ref|NP_657077.1| HTH_ASNC, helix_turn_helix ASNC type [Bacillus anthracis A2012] ref|NP_845515.1| transcriptional regulator, AsnC family [Bacillus anthracis str. Ames] gb|AAP27001.1| transcriptional regulator, AsnC family [Bacillus anthracis str. Ames] Length = 146 Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 6 IIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVSGEGCYWMR 65 +I Y ++ P K+ +NI A I +F +S + F ++ V +L+R+SGE Y M+ Sbjct: 52 VIAAYRTKFEPSKINKNIQAFI-MFKTSQCSD--FIQYCNAAPEVTDLYRISGEFNYMMK 108 Query: 66 VYAKDHDELATFLDQLLEFG 85 V + D LA FLD L++FG Sbjct: 109 VMSDSMDSLAAFLDSLMQFG 128 >ref|NP_520439.1| PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] emb|CAD16025.1| PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] Length = 151 Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 4/97 (4%) Query: 1 MRELE---IIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVS 57 +R LE +IEGY+ R NP+ G++I ALI + + + + FA + E HR++ Sbjct: 45 IRRLEEQGVIEGYSARINPELAGRDISALIRIQTTHAQITKCLKAFA-TMPEIIEAHRIT 103 Query: 58 GEGCYWMRVYAKDHDELATFLDQLLEFGNYRVNLGMG 94 G+ C+ +R + +L T +D L FG ++ + Sbjct: 104 GDDCFIVRAVVQRMKQLETVVDALARFGPVTTSIVLA 140 >ref|NP_388386.1| transcriptional regulator (Lrp/AsnC family) [Bacillus subtilis] sp|P96652|LRPA_BACSU HTH-type transcriptional regulator lrpA pir||D69653 transcription regulator of glyA trans lrpA - Bacillus subtilis dbj|BAA19341.1| PROBABLE TRANSCRIPTIONAL REGULATOR, SIMILAR TO REGULATORY PROTEIN ASNC. [Bacillus subtilis] emb|CAB12312.1| transcriptional regulator (Lrp/AsnC family) [Bacillus subtilis subsp. subtilis str. 168] gb|AAR24605.1| LrpA [Bacillus subtilis] Length = 136 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 48/90 (53%) Query: 6 IIEGYTVRWNPQKLGQNIHALITVFLSSNKAHPLFQKFALEHGSVAELHRVSGEGCYWMR 65 II+G ++ N KLG +IHA + +++ P + V ++VSG+GCY + Sbjct: 47 IIKGCSIEVNQVKLGFSIHAFLNIYIEKIHHQPYLAFIETQDNYVINNYKVSGDGCYLLE 106 Query: 66 VYAKDHDELATFLDQLLEFGNYRVNLGMGQ 95 ++ L FL+ L + NY+V++ +G+ Sbjct: 107 CKFPSNEVLDQFLNDLNKHANYKVSIVIGK 136 >ref|NP_241078.1| transcriptional regulator (Lrp/AsnC family) [Bacillus halodurans] pir||D83676 transcription regulator (Lrp/AsnC family) BH0212 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03931.1| transcriptional regulator (Lrp/AsnC family) [Bacillus halodurans] Length = 146 Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 7/94 (7%) Query: 1 MRELEIIEGYTVRWNPQKLGQNIHALITVFLSSNK---AHPLFQKFALEHGSVAELHRVS 57 ++E +IEG + R + K+G+++ TVF+ ++ + F+KF E+ + E HR++ Sbjct: 41 LKERGVIEGISARLSYPKIGKSV----TVFIQVSEVTVPYATFEKFVEENPHIIECHRIT 96 Query: 58 GEGCYWMRVYAKDHDELATFLDQLLEFGNYRVNL 91 G Y M+ +D L + +D+L+ +G +L Sbjct: 97 GSISYMMKAVVRDMQHLQSLIDELVPYGTLNTSL 130 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 145,822,330 Number of extensions: 5040090 Number of successful extensions: 12453 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 12483 Number of HSP's successfully gapped: 6 Length of query: 97 Length of database: 757,237,578 Length adjustment: 65 Effective length of query: 32 Effective length of database: 580,756,143 Effective search space: 18584196576 Effective search space used: 18584196576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)