BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0008.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00183677.1| hypothetical protein Exigu089001 [Exiguobacte... 234 1e-60 ref|NP_881230.1| putative exported protein [Bordetella pertussis... 231 9e-60 ref|ZP_00087923.1| COG2220: Predicted Zn-dependent hydrolases of... 211 1e-53 ref|NP_791682.1| conserved hypothetical protein [Pseudomonas syr... 209 5e-53 gb|AAN62260.1| conserved hypothetical protein [Pseudomonas aerug... 206 5e-52 >ref|ZP_00183677.1| hypothetical protein Exigu089001 [Exiguobacterium sp. 255-15] Length = 251 Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 117/249 (46%), Positives = 160/249 (64%), Gaps = 3/249 (1%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNARRNPLVPLPGPVQQWLAPD 66 + IQ IRNA L + Y FL+DP L E+ + PP +PNA NPLV LP V L PD Sbjct: 1 MDIQQIRNATLVVNYANQVFLIDPFLGEKGSLPPFGETPNAVPNPLVDLPVDVSTLLDPD 60 Query: 67 AVLVTHLHQDHWDEAAVSLLPHELPVLCQD-GDEGTLSAQGFGHVSVVEDHAAKNFRGVT 125 A+ VTHLH DH+DE A +LP ++P+ Q+ D T+ GF +VS E+ A + Sbjct: 61 AIFVTHLHADHFDETAKEILPKQIPLYAQNQADAATIREAGFTNVSSFENGLA--LGDIR 118 Query: 126 LKRTGGRHGTGEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPEVIIVN 185 + T GRHG GEIG+ MG VSG V EP LY+AGDTIWC+EV+ A+++H P++IIVN Sbjct: 119 VYHTSGRHGVGEIGQRMGTVSGLVLTHPDEPTLYIAGDTIWCEEVETAIEQHAPDIIIVN 178 Query: 186 AGGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQEGLLG 245 +G AQFLTG ITM+++D++ + + A EA++I H+E++NHCL+ R+ +A L L Sbjct: 179 SGAAQFLTGEPITMSQRDLLAVHQAAAEATIIVSHLESVNHCLLRRDMIADFLAAHHLSA 238 Query: 246 RVKIPADGE 254 IP DGE Sbjct: 239 HFLIPDDGE 247 >ref|NP_881230.1| putative exported protein [Bordetella pertussis Tohama I] emb|CAE42882.1| putative exported protein [Bordetella pertussis] Length = 292 Score = 231 bits (590), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 121/257 (47%), Positives = 167/257 (64%), Gaps = 12/257 (4%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNAR-RNPLVPLPGPVQQWLAP 65 +++Q IRNA + + Y G TFL+DPML+ + A P N+ + RNPLV LP PVQ LA Sbjct: 33 VQLQQIRNATVKITYAGTTFLIDPMLARKGAYPGFENTYRSTLRNPLVDLPLPVQDILAD 92 Query: 66 -DAVLVTHLHQDHWDEAAVSLLPHELPVLCQD-GDEGTLSAQGFGHVSVVEDHAAKNFRG 123 DAV+VTH H DHWD+AA LLP ++P+ Q+ D T+ +QGF +V V+ D A +F G Sbjct: 93 VDAVIVTHTHLDHWDDAAQQLLPKDIPLFVQNQADAVTIRSQGFTNVRVLADQA--DFGG 150 Query: 124 VTLKRTGGRHGTG------EIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEH 177 VTL RTGG+HGT E+ +G + G VF+A LY+ GDTIW DEV AL H Sbjct: 151 VTLSRTGGQHGTDDMYARPEVATFLGDIMGVVFQAPDHKTLYLVGDTIWRDEVDQALSRH 210 Query: 178 KPEVIIVNAGGAQFLT-GGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAA 236 +P V+++NAG A G I M ++D++ R P A+++AVHM+AINH +TR++L A Sbjct: 211 RPGVVVINAGYAMLSDYDGSIIMGKEDVLRASRSVPGATIVAVHMDAINHMALTRDELKA 270 Query: 237 RLEQEGLLGRVKIPADG 253 ++Q G+ RV+IPADG Sbjct: 271 YVDQHGIEDRVRIPADG 287 >ref|ZP_00087923.1| COG2220: Predicted Zn-dependent hydrolases of the beta-lactamase fold [Pseudomonas fluorescens PfO-1] Length = 255 Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/256 (43%), Positives = 164/256 (64%), Gaps = 9/256 (3%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNARR-NPLVPLPGPVQQWLAP 65 + + IRNA L +EY G FL+DP+L+++ A P + N NP V LP ++ L Sbjct: 1 MNVTQIRNATLIIEYAGTRFLIDPLLAKKGAYPGFEGTANCHLFNPTVALPVSMEDILNV 60 Query: 66 DAVLVTHLHQDHWDEAAVSLLPHELPVLCQDG-DEGTLSAQGFGHVSVVEDHAAKNFRGV 124 DAV+VTH H DHWDEAA +L+P +LP+ Q+ D + +QGFG V +++ F GV Sbjct: 61 DAVIVTHTHPDHWDEAAKALVPKQLPIFVQNEEDRELILSQGFGDVRLIK---GALFNGV 117 Query: 125 TLKRTGGRHGT----GEIGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPE 180 +L +T G+HGT +GE++G+V G +F E LY+AGDTIW V+ AL + +PE Sbjct: 118 SLAQTLGQHGTDGAMAAMGEILGEVCGVMFSHPDEKTLYLAGDTIWNQYVQDALQQFQPE 177 Query: 181 VIIVNAGGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQ 240 V+I+NAG AQ + G I M +QD+ E+ + AP+A++IA HME++NH ++TRE+L + Sbjct: 178 VVILNAGDAQVIGLGSIIMGKQDVYEVFQAAPQATLIATHMESVNHAVLTREELREFSVE 237 Query: 241 EGLLGRVKIPADGEWC 256 +G+ R+ IP DGE C Sbjct: 238 KGMTDRLLIPEDGETC 253 >ref|NP_791682.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO55377.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 293 Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 113/258 (43%), Positives = 164/258 (63%), Gaps = 14/258 (5%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNAR-RNPLVPLP-GPVQQWLA 64 + +Q +RNA + + YGG TFL+DPML+++ P N+ + RNPLV L P + Sbjct: 34 VNVQQVRNATVKISYGGTTFLIDPMLAKKGTYPGFENTYRSNLRNPLVDLTESPTEVIAG 93 Query: 65 PDAVLVTHLHQDHWDEAAVSLLPHELPVLCQ-DGDEGTLSAQGFGHVSVVEDHAAKNFRG 123 DAV+VTH H DHWD+AA +LP ++P+ Q + D + +QGF +V V+ D A F G Sbjct: 94 IDAVIVTHTHLDHWDDAAQKVLPKDIPLFTQHEKDAQLIRSQGFKNVRVLTDEA--EFGG 151 Query: 124 VTLKRTGGRHGTGE------IGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEH 177 V + +TGG+HGT E + + +G+ G VF+A G LY+AGDT+W EV A++ + Sbjct: 152 VKITKTGGQHGTDEMYAVPALAKPLGEAMGVVFQAPGYKTLYLAGDTVWRKEVDQAIENY 211 Query: 178 KPEVIIVNAGGAQFLTG--GHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLA 235 PEVI++NAG A+ +TG G I M E+D++ + A A ++AVHM AINH +TREQL Sbjct: 212 CPEVIVLNAGKAK-MTGYEGAIIMGEEDVLRASQVAKNAKIVAVHMNAINHMSLTREQLR 270 Query: 236 ARLEQEGLLGRVKIPADG 253 A ++Q+G+ RV IP DG Sbjct: 271 AYVKQQGIESRVDIPEDG 288 >gb|AAN62260.1| conserved hypothetical protein [Pseudomonas aeruginosa] Length = 256 Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/254 (43%), Positives = 159/254 (62%), Gaps = 8/254 (3%) Query: 7 LKIQLIRNAALWLEYGGITFLVDPMLSEQEANPPIPNSPNAR-RNPLVPLPGPVQQWLAP 65 +KI+ IRNA L +EYGG FL+DP L+E+ A P + N+ RNP L P+++ + Sbjct: 1 MKIRQIRNATLVIEYGGKKFLIDPWLAEKGAYPGFGGTLNSHLRNPTADLVVPMEEIVNV 60 Query: 66 DAVLVTHLHQDHWDEAAVSLLPHELPVLCQD-GDEGTLSAQGFGHVSVVEDHAAKNFRGV 124 DAV++TH H DHWDE A + +P + P Q D ++ GF V V+ + F GV Sbjct: 61 DAVILTHDHPDHWDEVAANAIPKDKPFFVQHFADRESIRRAGFTDVRVLTGNP--EFEGV 118 Query: 125 TLKRTGGRHGTGE----IGELMGKVSGFVFRAEGEPVLYVAGDTIWCDEVKVALDEHKPE 180 L +T G+HG+ E +L+ ++SG VF+ E LY+AGDTIW V+ L E+KP+ Sbjct: 119 KLIKTPGQHGSDEGVQAAYDLLLEISGVVFKHSDEKTLYIAGDTIWNQYVEANLKEYKPD 178 Query: 181 VIIVNAGGAQFLTGGHITMNEQDIIELCRYAPEASVIAVHMEAINHCLVTREQLAARLEQ 240 VII+NAG AQ G+I MN++D++ +C APEA VIA HME++NH ++TR +L L++ Sbjct: 179 VIILNAGDAQVPQYGNIIMNKEDVLSVCTAAPEAVVIASHMESVNHAMLTRTELRGFLKE 238 Query: 241 EGLLGRVKIPADGE 254 G+ RV IP DGE Sbjct: 239 NGMSSRVLIPEDGE 252 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 421,250,546 Number of extensions: 18200187 Number of successful extensions: 44905 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 44891 Number of HSP's successfully gapped: 13 Length of query: 256 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 133 Effective length of database: 423,280,401 Effective search space: 56296293333 Effective search space used: 56296293333 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)